Gcaud7639.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud7639.t1
Unique NameGcaud7639.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length158
Homology
BLAST of Gcaud7639.t1 vs. uniprot
Match: A0A2V3IXI8_9FLOR (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial n=2 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IXI8_9FLOR)

HSP 1 Score: 276 bits (707), Expect = 1.360e-93
Identity = 129/155 (83.23%), Postives = 143/155 (92.26%), Query Frame = 0
Query:    2 MSSSKWIGTIGRLAPRTARMMSTNLDQTINVLSGIPEKHAARRVRIFRPAKVATQQGRGSLTQMWKMSFEKLEGDDRWTNPLMGWTSTGDPLSNMGMSFPSKEAAIQYAERNGYEFNVVEPAEEKQHVKPIAPFKRSMVHHWRHSGTPVYDGDTT 156
            MS  + IG + RLAPR  R+MSTN D TINVLSGIP+KHAARRVRIFRPAKVATQQGRGS+TQMWKM+FEK+EGDDRWTNPLMGWTSTGDPLSNMGM+FP+KEAAIQYAERNGY F VVEPA+EK H+KPIAPFKR+MVHHWRHSGTPVY+GDT+
Sbjct:    1 MSVMRGIGNLRRLAPRATRLMSTNSDHTINVLSGIPDKHAARRVRIFRPAKVATQQGRGSITQMWKMTFEKIEGDDRWTNPLMGWTSTGDPLSNMGMAFPTKEAAIQYAERNGYGFTVVEPAQEKPHLKPIAPFKRAMVHHWRHSGTPVYEGDTS 155          
BLAST of Gcaud7639.t1 vs. uniprot
Match: R7QMJ9_CHOCR (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QMJ9_CHOCR)

HSP 1 Score: 241 bits (616), Expect = 9.760e-80
Identity = 112/153 (73.20%), Postives = 132/153 (86.27%), Query Frame = 0
Query:    2 MSSSKWIGTIGRLAPRTARMMSTNLDQTINVLSGIPEKHAARRVRIFRPAKVATQQGRGSLTQMWKMSFEKLEGDDRWTNPLMGWTSTGDPLSNMGMSFPSKEAAIQYAERNGYEFNVVEPAEEKQHVKPIAPFKRSMVHHWRHSGTPVYDGD 154
            MS S W  ++ RLAP  +R +S++ D ++NVLSGIP+KHAARRVRI RPAKVATQQGRG LTQMW++ FEK+EGDDRWTNPLMGWTSTGDPLSNMGM FP+KEAA++YAERNGYE+ V+EP EEKQ V+ IAPFKR+MVHHWRH   PVY+GD
Sbjct:    1 MSLSGWRASMTRLAPMASRQLSSSRDASVNVLSGIPDKHAARRVRIHRPAKVATQQGRGGLTQMWRLQFEKIEGDDRWTNPLMGWTSTGDPLSNMGMPFPTKEAAMKYAERNGYEYKVIEPEEEKQQVRKIAPFKRAMVHHWRHEA-PVYEGD 152          
BLAST of Gcaud7639.t1 vs. uniprot
Match: M1VJG6_CYAM1 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial n=2 Tax=cellular organisms TaxID=131567 RepID=M1VJG6_CYAM1)

HSP 1 Score: 162 bits (411), Expect = 3.200e-48
Identity = 79/150 (52.67%), Postives = 103/150 (68.67%), Query Frame = 0
Query:    3 SSSKWIGTIGRLAPRTA-RMMSTNLDQTINVLSGIPEKHAARRVRIFRPAKVATQQGRGSLTQMWKMSFEKLEGDDRWTNPLMGWTSTGDPLSNMGMSFPSKEAAIQYAERNGYEFNVVEPAEEKQHVKPIAPFKRSMVHHWRHSGTPVY 151
            +S  W   + R  P +  R +  +    +  +SG P++H +RR+RI+RPA+ ATQQGRGS TQ+WK  FE  +G  RWTNPLMGW S+GDPLS   ++F SKEAAIQYAE+ G+++ V +P EE  H + IAPF RSMVHHWRH G P Y
Sbjct:    8 ASGLWKHILQRQNPLSGQRRLFEDTRGALGRVSGTPDEHRSRRLRIYRPARSATQQGRGSRTQLWKAEFEVQDGFGRWTNPLMGWYSSGDPLSQTTLTFSSKEAAIQYAEKYGFQYVVYDPHEEPLHERKIAPFTRSMVHHWRHEGIPRY 157          
BLAST of Gcaud7639.t1 vs. uniprot
Match: M2Y480_GALSU (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y480_GALSU)

HSP 1 Score: 159 bits (403), Expect = 5.390e-47
Identity = 68/126 (53.97%), Postives = 93/126 (73.81%), Query Frame = 0
Query:   29 TINVLSGIPEKHAARRVRIFRPAKVATQQGRGSLTQMWKMSFEKLEGDDRWTNPLMGWTSTGDPLSNMGMSFPSKEAAIQYAERNGYEFNVVEPAEEKQHVKPIAPFKRSMVHHWRHSGTPVYDGD 154
            ++ V+SG+PEKH  RRV+I++P + ATQQGRGS   +WK+ FEKLE  DRWTNPLMGWTSTGDPLS   + FP +E+AI+YA R G  + + EP EE++H++    + +SMVH W H+G P Y+ +
Sbjct:   54 SLGVISGVPEKHLKRRVKIYKPPRTATQQGRGSKYAVWKLEFEKLEEGDRWTNPLMGWTSTGDPLSQTAVYFPDRESAIEYARRYGLSYIIYEPEEEEEHIRSFNAYGKSMVHQWNHNGIPKYEDE 179          
BLAST of Gcaud7639.t1 vs. uniprot
Match: A0A5J4YTN4_PORPP (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YTN4_PORPP)

HSP 1 Score: 155 bits (393), Expect = 7.040e-46
Identity = 71/140 (50.71%), Postives = 99/140 (70.71%), Query Frame = 0
Query:   13 RLAPRTARMMSTNLDQTINVLSGIPEKHAARRVRIFRPAKVATQQGRGSLTQMWKMSFEKLEGDDRWTNPLMGWTSTGDPLSNMGMSFPSKEAAIQYAERNGYEFNVVEPAEEKQHVKPIAPFKRSMVHHWRHSGTPVYD 152
            R+  R  R ++T+ +  +  +SG+PE+H  RR+RIF+PA   TQQG+G  T++W   +EKLEG DRWTNPLMGWTSTGDP+SN+ + FP KE+AIQYAE+ GY++ V E  +  ++V+    + +SMVH WRH   P YD
Sbjct:   11 RVLLRAQRGVTTDENAAMGAISGVPEEHLKRRLRIFQPASATTQQGKGVRTKLWVAIYEKLEGGDRWTNPLMGWTSTGDPVSNLRLEFPDKESAIQYAEKYGYKYVVSEREQRSENVRKFGAYGKSMVHQWRHK-PPKYD 149          
BLAST of Gcaud7639.t1 vs. uniprot
Match: A0A7S1TKT9_9RHOD (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1TKT9_9RHOD)

HSP 1 Score: 156 bits (395), Expect = 1.150e-45
Identity = 69/131 (52.67%), Postives = 97/131 (74.05%), Query Frame = 0
Query:   27 DQTINVLSGIPEKHAARRVRIFRPAKVATQQGRGSLTQMWKMSFEKLEGDDRWTNPLMGWTSTGDPLSNMGMSFPSKEAAIQYAERNGYEFNVVEPAEEKQHVKPIAPFKRSMVHHWRHSGTPVYDGDTTE 157
            D  + V +G P +H  RR+RI+RPA+V+TQQG+G+ + +W+  FEK+EG DRWTNPLMGWTST DPLSN  +SF SKE AI+YA R GY++ V EP   K++++  + + +SMVH WRH   PV+D D+++
Sbjct:   60 DTDLGVATGHPTEHLQRRLRIYRPARVSTQQGKGATSVLWRAEFEKIEGADRWTNPLMGWTSTADPLSNTSLSFASKEEAIEYATRYGYKYTVFEPEHSKENLRKFSAYGKSMVHQWRHK-IPVFDSDSSK 189          
BLAST of Gcaud7639.t1 vs. uniprot
Match: A0A7S3EMI8_9RHOD (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EMI8_9RHOD)

HSP 1 Score: 156 bits (395), Expect = 1.190e-45
Identity = 77/155 (49.68%), Postives = 103/155 (66.45%), Query Frame = 0
Query:    3 SSSKWIGTIG--RLAPRTARMMSTNLDQTINVLSGIPEKHAARRVRIFRPAKVATQQGRGSLTQMWKMSFEKLEGD-DRWTNPLMGWTSTGDPLSNMGMSFPSKEAAIQYAERNGYEFNVVEPAEEKQHVKPIAPFKRSMVHHWRHSGTPVYDGD 154
            SSSK  G +   + A         N    I +LSG PE+H +R VRI+RPA+ A QQG+ S    W + FEK +GD DRWTNPLMGWTSTGDPL+N+ +SFP++EAA++YA RNG+ + + +   EK++V+    F RSMVH WRH+  PVY+ D
Sbjct:   35 SSSKGQGEVAVVKEAAGAVAEAEENPHDKIFMLSGAPEEHVSRHVRIYRPARSAMQQGKKSKNATWHLKFEKTDGDVDRWTNPLMGWTSTGDPLTNLNVSFPTQEAAVEYAVRNGFHYTIEDRLPEKENVRKFQAFGRSMVHQWRHNQIPVYEDD 189          
BLAST of Gcaud7639.t1 vs. uniprot
Match: A0A7J7IMA9_9RHOD (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IMA9_9RHOD)

HSP 1 Score: 153 bits (387), Expect = 1.480e-44
Identity = 70/119 (58.82%), Postives = 87/119 (73.11%), Query Frame = 0
Query:   33 LSGIPEKHAARRVRIFRPAKVATQQGRGSLTQMWKMSFEKLEGDDRWTNPLMGWTSTGDPLSNMGMSFPSKEAAIQYAERNGYEFNVVEPAEEKQHVKPIAPFKRSMVHHWRHSGTPVY 151
            +SG P++H  RR+RIFRPA+   QQGRGS TQ+WK  FE  +G  RWTNPLMGW S+GDPLS   ++F SKEAAIQYAE+ G+++ V +P EE  H + I PF R+MVHHWRH   P Y
Sbjct:   41 VSGTPDEHRTRRLRIFRPARSPVQQGRGSRTQLWKAEFEVQDGFGRWTNPLMGWYSSGDPLSQTTLTFSSKEAAIQYAEKYGFQYIVYDPHEEPIHERKIVPFGRAMVHHWRHEAIPQY 159          
BLAST of Gcaud7639.t1 vs. uniprot
Match: A0A7S1TN47_9RHOD (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1TN47_9RHOD)

HSP 1 Score: 131 bits (329), Expect = 3.160e-36
Identity = 57/106 (53.77%), Postives = 80/106 (75.47%), Query Frame = 0
Query:   52 KVATQQGRGSLTQMWKMSFEKLEGDDRWTNPLMGWTSTGDPLSNMGMSFPSKEAAIQYAERNGYEFNVVEPAEEKQHVKPIAPFKRSMVHHWRHSGTPVYDGDTTE 157
            +V+TQQG+G+ + +W+  FEK+EG DRWTNPLMGWTST DPLSN  +SF SKE AI+YA R GY++ V EP   K++++  + + +SMVH WRH   PV+D D+++
Sbjct:   42 RVSTQQGKGATSVLWRAEFEKIEGADRWTNPLMGWTSTADPLSNTSLSFASKEEAIEYATRYGYKYTVFEPEHSKENLRKFSAYGKSMVHQWRHK-IPVFDSDSSK 146          
BLAST of Gcaud7639.t1 vs. uniprot
Match: A0A7S0G1Y0_9RHOD (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial (Fragment) n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G1Y0_9RHOD)

HSP 1 Score: 118 bits (295), Expect = 7.340e-31
Identity = 55/109 (50.46%), Postives = 76/109 (69.72%), Query Frame = 0
Query:   19 ARMMSTNLDQTINVLSGIPEKHAARRVRIFRPAKVATQQGRGSLTQMWKMSFEKLEGD-DRWTNPLMGWTSTGDPLSNMGMSFPSKEAAIQYAERNGYEFNVVEPAEEK 126
            A +   N    I +LSG P++H +R VRI+RPA+ A QQG+ S    W + F K +GD DRWTNPLMGWTSTGDPL+N+ +SF ++EAA++YA RNG+ + + +   EK
Sbjct:   56 AEVAQENPHNRIFMLSGAPDEHVSRHVRIYRPARSAMQQGKKSKNATWHLEFAKTDGDVDRWTNPLMGWTSTGDPLTNLNVSFRTQEAAVKYAIRNGFHYTIEDRLPEK 164          
The following BLAST results are available for this feature:
BLAST of Gcaud7639.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IXI8_9FLOR1.360e-9383.23NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
R7QMJ9_CHOCR9.760e-8073.20NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
M1VJG6_CYAM13.200e-4852.67NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
M2Y480_GALSU5.390e-4753.97NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
A0A5J4YTN4_PORPP7.040e-4650.71NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
A0A7S1TKT9_9RHOD1.150e-4552.67NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
A0A7S3EMI8_9RHOD1.190e-4549.68NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
A0A7J7IMA9_9RHOD1.480e-4458.82NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
A0A7S1TN47_9RHOD3.160e-3653.77NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
A0A7S0G1Y0_9RHOD7.340e-3150.46NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006885NADH dehydrogenase ubiquinone Fe-S protein 4, mitochondrialPFAMPF04800ETC_C1_NDUFA4coord: 44..130
e-value: 8.2E-29
score: 99.7
IPR006885NADH dehydrogenase ubiquinone Fe-S protein 4, mitochondrialPANTHERPTHR12219NADH-UBIQUINONE OXIDOREDUCTASEcoord: 27..128
IPR038532NADH dehydrogenase ubiquinone Fe-S protein 4-like superfamilyGENE3D3.30.160.190atu1810 like domaincoord: 40..125
e-value: 9.9E-31
score: 107.3
NoneNo IPR availablePANTHERPTHR12219:SF8NADH DEHYDROGENASE [UBIQUINONE] IRON-SULFUR PROTEIN 4, MITOCHONDRIALcoord: 27..128

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_240_length_34680_cov_4.545549contigNODE_240_length_34680_cov_4.545549:8432..9063 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7639.t1Gcaud7639.t1Gracilaria caudata M_176_S67 malemRNANODE_240_length_34680_cov_4.545549 8432..9063 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud7639.t1 ID=Gcaud7639.t1|Name=Gcaud7639.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=158bp
MMSSSKWIGTIGRLAPRTARMMSTNLDQTINVLSGIPEKHAARRVRIFRP
AKVATQQGRGSLTQMWKMSFEKLEGDDRWTNPLMGWTSTGDPLSNMGMSF
PSKEAAIQYAERNGYEFNVVEPAEEKQHVKPIAPFKRSMVHHWRHSGTPV
YDGDTTE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006885NADH_UbQ_FeS_4_mit
IPR038532NDUFS4-like_sf