Gcaud7591.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud7591.t1
Unique NameGcaud7591.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length430
Homology
BLAST of Gcaud7591.t1 vs. uniprot
Match: A0A2V3J4J0_9FLOR (Putative RNA-binding protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J4J0_9FLOR)

HSP 1 Score: 422 bits (1084), Expect = 7.600e-145
Identity = 211/255 (82.75%), Postives = 233/255 (91.37%), Query Frame = 0
Query:  175 EQLHRSHSQGVHPDETRPAENGNSADDARVESDKQAQHAEAAVQPNADGNAPNLINLFVRNVARHVVEDQLVNLFSKFGKVDSAIVVRDPLSGECRGFGFVKMYTEDAAKAAMENLRDFEFEGRKISVERAKRNAPHQRTPGAYMGIDRRIRDRYAGIKRAREYDSGYGYGEPYMRRGSYRGRYGEPSRHRYDDRGWDSRRDHRPLYGRSPYDERDRVRRRYDEGPRYPPRDLDRDQRFRERQPPVPRESADDYI 429
            +Q  RS++     D  RP+ENG  ADDAR  SDK AQ+ E A Q +ADG APNLINLFVRNVARHV+E+QLVNLFSK+GKV+SAIVVRDPLSGECRGFGFVKMYTE+AAKAA+E+LRD++FEGRKISVERAKRNAPHQRTPGAYMGIDRRIRDRYAGIKRAREYD+GYGYG+ Y+RRGSYRGRYGEPSRHRYD+RGWD+RRDHRP YGR PYDER+RVRRRYDEGPRYPPRDLDR+QRFRERQPPVPRESADDYI
Sbjct:    8 DQPDRSYAPDTDQDTDRPSENGAPADDARNMSDKDAQNVEGAAQQDADGTAPNLINLFVRNVARHVMEEQLVNLFSKYGKVESAIVVRDPLSGECRGFGFVKMYTEEAAKAAIESLRDYDFEGRKISVERAKRNAPHQRTPGAYMGIDRRIRDRYAGIKRAREYDTGYGYGDSYVRRGSYRGRYGEPSRHRYDERGWDARRDHRPPYGRPPYDERERVRRRYDEGPRYPPRDLDREQRFRERQPPVPRESADDYI 262          
BLAST of Gcaud7591.t1 vs. uniprot
Match: R7Q5L8_CHOCR (Transformer-SR ribonucleoprotein, putative n=2 Tax=Chondrus crispus TaxID=2769 RepID=R7Q5L8_CHOCR)

HSP 1 Score: 238 bits (606), Expect = 1.880e-71
Identity = 134/214 (62.62%), Postives = 160/214 (74.77%), Query Frame = 0
Query:  219 PNADGNAPNLINLFVRNVARHVVEDQLVNLFSKFGKVDSAIVVRDPLSGECRGFGFVKMYTEDAAKAAMENLRDFEFEGRKISVERAKRNAPHQRTPGAYMGIDRRIRDRYAGIKRAREYDSGYGYGEPYM--RRGSYRGRYGEPS-RHRYDDRGWDSRRDHRPLYGRSPYDERDRVRRRYDEGPRYPPRDLDRDQRFRERQPPVPRESADDYI 429
            P+ +     L+NLFVRNVA+HV+E+QLV LFSKFGKVDSA+VVRDP S ECRGFGFVKM  E+ A  A+E LRDFEFEGR+I+VE+AKR APH RTPG YMGIDRRIRDRY+G+KR+R+Y  GY +G+PY   RRG Y GR  E   R RYDDRGWD R  +RP   R  YD R++ R RY+ G  Y  R    +QRFRER+ PVPRE ADD++
Sbjct:  137 PSDEQGGSELVNLFVRNVAKHVIEEQLVVLFSKFGKVDSAVVVRDPHSRECRGFGFVKMLHEEEAAQAIEALRDFEFEGRRIAVEKAKRKAPHSRTPGEYMGIDRRIRDRYSGMKRSRDY-GGYEHGDPYGMDRRGGYGGRRHESDGRGRYDDRGWDPR-GYRPQPMRPSYDGREQKRGRYEGGGGYGSRADAGEQRFREREAPVPREPADDFV 348          
BLAST of Gcaud7591.t1 vs. uniprot
Match: G2Q7R8_MYCTT (RRM domain-containing protein n=2 Tax=Chaetomiaceae TaxID=35718 RepID=G2Q7R8_MYCTT)

HSP 1 Score: 108 bits (271), Expect = 5.150e-23
Identity = 74/186 (39.78%), Postives = 101/186 (54.30%), Query Frame = 0
Query:  188 DETRPAENGNSADDARVESDKQAQHAEAAVQPNADGNAPNLINLFVRNVARHVVEDQLVNLFSKFGKVDSAIVVRDPLSGECRGFGFVKMYTEDAAKAAMENLRDFEFEGRKISVERAKRNAPHQRTPGAYMGIDRRI-RDRYAGIKRAREYDSGYG-YGEPYMRRGSYRGRYGEPSRHRYDDRGW 371
            D  R + + N  D A ++SD   +  + A  P +        NLFV  +   + E ++  LF K+G+V+   ++RDP SGE RGFGFVKM T + A AAME LR    EGR +++E+A+R+ P   TPG Y G  +R  R RY   +R      GYG YG  Y R  SYRG  G    +  DDRG+
Sbjct:   37 DSRRRSVSPNGNDRAPIKSDSGNKEDDGATNPGS--------NLFVTGIHPRLEESEITRLFEKYGEVEKCQIMRDPHSGESRGFGFVKMVTSEQADAAMEGLRGEVIEGRTLNIEKARRSRPRTPTPGKYFGPPKRDPRSRYDDRRRG-----GYGGYGGGYGRDDSYRGGRG----YXXDDRGY 205          
BLAST of Gcaud7591.t1 vs. uniprot
Match: G2QS49_THETT (RRM domain-containing protein n=2 Tax=Thermothielavioides terrestris TaxID=2587410 RepID=G2QS49_THETT)

HSP 1 Score: 106 bits (264), Expect = 4.790e-22
Identity = 69/184 (37.50%), Postives = 97/184 (52.72%), Query Frame = 0
Query:  188 DETRPAENGNSADDARVESDKQAQHAEAAVQPNADGNAPNLINLFVRNVARHVVEDQLVNLFSKFGKVDSAIVVRDPLSGECRGFGFVKMYTEDAAKAAMENLRDFEFEGRKISVERAKRNAPHQRTPGAYMGIDRRIRDRYAGIKRAREYDSGYGYGEPYMRRGSYRGRYGEPSRHRYDDRGW 371
            D  R + + N  D A +++D  A+  E+AV P +        NLFV  +   + E ++  LF K+G+V+   ++RDP SGE RGFGFVKM T + A AAME LR    EGR +++E+A+R+ P   TPG Y G  +R         R   YD          RRG+Y G YG    +R   RG+
Sbjct:   38 DSRRRSMSPNGNDRAPLKNDGGAKEDESAVNPGS--------NLFVTGIHPRIEESEITRLFEKYGEVEKCQIMRDPHSGESRGFGFVKMMTSEQADAAMEGLRGEIIEGRTLNIEKARRSRPRTPTPGKYFGPPKRD-------PRGGRYDD--------RRRGAYGGGYGREDSYRGGPRGY 198          
BLAST of Gcaud7591.t1 vs. uniprot
Match: UPI0015C3847D (transformer-SR ribonucleoprotein n=1 Tax=Geosmithia morbida TaxID=1094350 RepID=UPI0015C3847D)

HSP 1 Score: 98.6 bits (244), Expect = 1.290e-20
Identity = 53/134 (39.55%), Postives = 77/134 (57.46%), Query Frame = 0
Query:  191 RPAENGNSADDARVESDKQAQHAEAAVQPNADGNAPNLINLFVRNVARHVVEDQLVNLFSKFGKVDSAIVVRDPLSGECRGFGFVKMYTEDAAKAAMENLRDFEFEGRKISVERAKRNAPHQRTPGAYMGIDRR 324
            R A      D A  ES  + +  + A+ P +        NLFV  +   +VE++++ +F K+G V+   ++RDP S E RGFGFVKM T D A+AA E L+  +FEGR +S+E+A+R  P   TPG Y G  +R
Sbjct:   45 RSASPNGRGDSAPKESGPKDEDDDGAINPGS--------NLFVTGIHPRLVEEEIIKMFEKYGDVEKCQIMRDPHSKESRGFGFVKMVTPDQAEAAKEGLQGEQFEGRTLSIEKARRARPRTPTPGKYFGPPKR 170          
BLAST of Gcaud7591.t1 vs. uniprot
Match: A0A2T2ZV95_9PEZI (RRM domain-containing protein n=2 Tax=Diaporthales TaxID=5114 RepID=A0A2T2ZV95_9PEZI)

HSP 1 Score: 98.2 bits (243), Expect = 1.490e-20
Identity = 56/130 (43.08%), Postives = 76/130 (58.46%), Query Frame = 0
Query:  191 RPAENGNSADDARVESDKQAQHAEAAVQPNADGNAPNLINLFVRNVARHVVEDQLVNLFSKFGKVDSAIVVRDPLSGECRGFGFVKMYTEDAAKAAMENLRDFEFEGRKISVERAKRNAPHQRTPGAYMG 320
            R A  GN  D A V++D + +  + AV P +        NLFV  +   + ED++  LF K+G V+   ++RDP + E RGFGFVKM T D A AA E L+  EFEGR +S+E+A+R  P   TPG Y G
Sbjct:   44 RSASPGN--DRAPVKNDDRDRDDDGAVNPGS--------NLFVTGIHPRLTEDEVTRLFQKYGTVEKCQIMRDPHTKESRGFGFVKMVTSDEADAAKEGLQGKEFEGRTLSIEKARRARPRTPTPGKYFG 163          
BLAST of Gcaud7591.t1 vs. uniprot
Match: B2B7H0_PODAN (Podospora anserina S mat+ genomic DNA chromosome 2, supercontig 2 n=2 Tax=Podospora anserina (strain S / ATCC MYA-4624 / DSM 980 / FGSC 10383) TaxID=515849 RepID=B2B7H0_PODAN)

HSP 1 Score: 100 bits (250), Expect = 4.980e-20
Identity = 72/186 (38.71%), Postives = 101/186 (54.30%), Query Frame = 0
Query:  195 NGNSADDARVESDKQAQHAE-AAVQPNADGNAPNLINLFVRNVARHVVEDQLVNLFSKFGKVDSAIVVRDPLSGECRGFGFVKMYTEDAAKAAMENLRDFEFEGRKISVERAKRNAPHQRTPGAYMGIDRRI--RDRYAGIKRAREYDS-----GYGYGEPYMRRGSYRGRYGEPSRHRYDDRGWD 372
            NGN  D A V+SD  +Q  E  AV P +        NLFV  +   + E ++  LF K+G+V+   +++DP +GE RGFGFVKM T + A+AA++ LR    EGR +S+E+A+R  P   TPG Y G  +R   R R+   +R   Y       GY  G+   R GS+RG       +R DDR +D
Sbjct:   47 NGN--DRAPVKSDNNSQKGEDGAVNPGS--------NLFVTGIHPRLEEAEVTRLFEKYGEVEKCQIMKDPQTGESRGFGFVKMVTSEMAEAAIDGLRGEVIEGRTLSIEKARRARPRTPTPGKYFGPPKREDGRGRFDDRRRGGGYXXXXXXXGYRGGDDSYRGGSHRG-------YRGDDRAYD 215          
BLAST of Gcaud7591.t1 vs. uniprot
Match: G0SE27_CHATD (RRM domain-containing protein n=1 Tax=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) TaxID=759272 RepID=G0SE27_CHATD)

HSP 1 Score: 100 bits (249), Expect = 6.990e-20
Identity = 61/143 (42.66%), Postives = 84/143 (58.74%), Query Frame = 0
Query:  230 NLFVRNVARHVVEDQLVNLFSKFGKVDSAIVVRDPLSGECRGFGFVKMYTEDAAKAAMENLRDFEFEGRKISVERAKRNAPHQRTPGAYMGIDRRIRDRYAGIKRAREYDSGYGYGEPYMRRGSYRGRYGEPSRHRYDDRGWD 372
            NLFV  +   + E ++  LF K+G+V+   ++RDP +GE RGFGFVKM T + A+AAME L+    EGR +++E+A+R+ P   TPG Y G  +R   RY   +R      GYG    Y R  SYRG  G    +  DDRG+D
Sbjct:   73 NLFVTGIHPRLEESEITRLFEKYGEVEKCQIMRDPHTGESRGFGFVKMMTSEQAEAAMEGLKGEIIEGRTLNIEKARRSRPRTPTPGKYFGPPKRDPRRYDDRRRG-----GYG---GYGRDDSYRGGRG----YGRDDRGYD 203          
BLAST of Gcaud7591.t1 vs. uniprot
Match: A0A0C4EPK7_PUCT1 (RRM domain-containing protein n=2 Tax=Puccinia triticina (isolate 1-1 / race 1 (BBBD)) TaxID=630390 RepID=A0A0C4EPK7_PUCT1)

HSP 1 Score: 96.7 bits (239), Expect = 5.360e-19
Identity = 82/214 (38.32%), Postives = 101/214 (47.20%), Query Frame = 0
Query:  203 RVESDKQAQHAEAAVQPNADGNAPNLINLFVRNVARHVVEDQLVNLFSKFGKVDSAIVVRDPLSGECRGFGFVKMYTEDAAKAAMENLRDFEFEGRKISVERAKRNAPHQRTPGAYMGIDRRIRDRYAGIKRAREYDSGYGYGEPYMRRGSYRGRYGEPSRHRYDDRGWDSRRDHR-----PLYG--RSPYDERDRVRRRYDEGPRYPPRDLDR 409
            +++SDK         Q N D N  N  NL V  ++    +  L  LFSK+G+V  A ++RDP + E RGFGFV M T + A AAM  L   +  G+ + VE+A+R      TPG Y G  +R   RY           G GYG  Y     Y G Y E     YDDRG    RD R     P+ G  R  YDER    R YD  PR   RD DR
Sbjct:   77 KIDSDKPMGRGR---QSNGDHNPGN--NLHVSGISTRAEDADLYELFSKYGRVQKAQLMRDPNTKEVRGFGFVTMETAEEADAAMAALNGTDLFGKPLGVEKARRGRARTPTPGQYFGPAKRDERRYDPR------GGGGGYGGGYRADDRYGGGYPERRXXXYDDRGPPPARDDRYGYAAPMRGGERDRYDER----RDYDR-PRRDERDYDR 274          
BLAST of Gcaud7591.t1 vs. uniprot
Match: YDC1_SCHPO (Uncharacterized RNA-binding protein C25G10.01 n=1 Tax=Schizosaccharomyces pombe (strain 972 / ATCC 24843) TaxID=284812 RepID=YDC1_SCHPO)

HSP 1 Score: 97.1 bits (240), Expect = 5.630e-19
Identity = 70/199 (35.18%), Postives = 106/199 (53.27%), Query Frame = 0
Query:  198 SADDARVESDKQAQHAEAAVQPNADGNAPNLIN-LFVRNVARHVVEDQLVNLFSKFGKVDSAIVVRDPLSGECRGFGFVKMYTEDAAKAAMENLRDFEFEGRKISVERAKRNAPHQRTPGAYMGIDRRIRDRYAGIKRAREYDSGYGYGEPYMRRGSYRGRYGEPSRHRYDDRGWDSRRDHRP-LYGRSPYDERDRVRR 394
            S ++  V+ + ++   +     +A   + NL N LFV  +A  + ED+L  +FSKFG V    ++R+P++   RGFGF+   T + A +A++NL   EF GR ++V++AKR+ PH  TPG YMG DRR   R          D GY       RR +YR R  + +R+R   R    +R+H P  Y +  Y+   R RR
Sbjct:   69 SMNEDEVDPNNESTALDKKEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNLNSQEFYGRVLNVQKAKRSRPHSPTPGKYMGYDRRRNSRDFPSNNK---DGGY-------RRNNYRDR--DSNRYRNSYRPSRPQREHSPGNYRKERYNVDSRPRR 255          
The following BLAST results are available for this feature:
BLAST of Gcaud7591.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J4J0_9FLOR7.600e-14582.75Putative RNA-binding protein n=1 Tax=Gracilariopsi... [more]
R7Q5L8_CHOCR1.880e-7162.62Transformer-SR ribonucleoprotein, putative n=2 Tax... [more]
G2Q7R8_MYCTT5.150e-2339.78RRM domain-containing protein n=2 Tax=Chaetomiacea... [more]
G2QS49_THETT4.790e-2237.50RRM domain-containing protein n=2 Tax=Thermothiela... [more]
UPI0015C3847D1.290e-2039.55transformer-SR ribonucleoprotein n=1 Tax=Geosmithi... [more]
A0A2T2ZV95_9PEZI1.490e-2043.08RRM domain-containing protein n=2 Tax=Diaporthales... [more]
B2B7H0_PODAN4.980e-2038.71Podospora anserina S mat+ genomic DNA chromosome 2... [more]
G0SE27_CHATD6.990e-2042.66RRM domain-containing protein n=1 Tax=Chaetomium t... [more]
A0A0C4EPK7_PUCT15.360e-1938.32RRM domain-containing protein n=2 Tax=Puccinia tri... [more]
YDC1_SCHPO5.630e-1935.18Uncharacterized RNA-binding protein C25G10.01 n=1 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 230..303
e-value: 3.5E-24
score: 96.3
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 231..300
e-value: 3.9E-16
score: 58.7
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 229..307
score: 18.120396
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 169..320
e-value: 3.9E-26
score: 93.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 382..429
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 131..210
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 12..116
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..221
NoneNo IPR availablePANTHERPTHR48034TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATEDcoord: 192..397
NoneNo IPR availablePANTHERPTHR48034:SF6TRANSFORMER-2 SEX-DETERMINING PROTEINcoord: 192..397
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 221..327

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_226_length_35554_cov_4.545132contigNODE_226_length_35554_cov_4.545132:24338..25764 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7591.t1Gcaud7591.t1Gracilaria caudata M_176_S67 malemRNANODE_226_length_35554_cov_4.545132 24338..25764 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud7591.t1 ID=Gcaud7591.t1|Name=Gcaud7591.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=430bp
MTVPYDEGAASPRRDAPQEKEAYPRKAHDRDHHLHNHERSDHPRRDHQSR
HYARGSDHHRSPQHHHPPATDHFHSERDQRSPDPQVHRDRDPEPPHYADD
RHSPPGRPDDVQDRQPHPAHGQNGNRGPPAESDAESDRNERRFEPDYKPE
PHGREERADGHEQPPDVSESAHDAEQLHRSHSQGVHPDETRPAENGNSAD
DARVESDKQAQHAEAAVQPNADGNAPNLINLFVRNVARHVVEDQLVNLFS
KFGKVDSAIVVRDPLSGECRGFGFVKMYTEDAAKAAMENLRDFEFEGRKI
SVERAKRNAPHQRTPGAYMGIDRRIRDRYAGIKRAREYDSGYGYGEPYMR
RGSYRGRYGEPSRHRYDDRGWDSRRDHRPLYGRSPYDERDRVRRRYDEGP
RYPPRDLDRDQRFRERQPPVPRESADDYI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf