Gcaud7566.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud7566.t1
Unique NameGcaud7566.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length255
Homology
BLAST of Gcaud7566.t1 vs. uniprot
Match: A0A2V3J4J5_9FLOR (Transcription initiation factor TFIID subunit 2 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J4J5_9FLOR)

HSP 1 Score: 394 bits (1012), Expect = 3.620e-124
Identity = 189/229 (82.53%), Postives = 203/229 (88.65%), Query Frame = 0
Query:    2 IRGIIGTDVRNIVRQWASHPGILRLQVAYHYNARKHTIELAIKQDSAGHGSRKGKEGLRFTGTINIRVMETEGEYDHSVEVSDSVFITEIPCHSRRAKHKSGAQAEKEFNENPARASPILWMRFDPDQEWCMDCNFRQTKSAWISVLNSGRDAMGQFEACRGLAGSGHQVIVNKLLTVLKDEQIYWRVRAEAARILSSTDEGLKKLLSYYRSCYAEKSKEGSGVLLPHS 230
            IRGIIGTDVR++VR WAS PGI RLQVAYHYNARKH IEL IKQD   +G    K+GL FTGTINIRVMETEGEYDHSVEVSD VF+ EIPCHSRR+KHKSGAQAEKEFNENPARASPILW+RFDPDQEWC +CNF+QTKSAWISVLNSGRDAMGQFEACRGLAGSGH+VIVNKLLTVLKDEQIYWRVRAEAARILSST+EGLKKLL Y+R  Y E   E  G+LLP +
Sbjct:  577 IRGIIGTDVRSMVRLWASSPGIPRLQVAYHYNARKHCIELVIKQDCLANGHSPAKKGLLFTGTINIRVMETEGEYDHSVEVSDPVFVAEIPCHSRRSKHKSGAQAEKEFNENPARASPILWIRFDPDQEWCTECNFKQTKSAWISVLNSGRDAMGQFEACRGLAGSGHKVIVNKLLTVLKDEQIYWRVRAEAARILSSTEEGLKKLLLYFRESYTESPGEKDGLLLPQN 805          
BLAST of Gcaud7566.t1 vs. uniprot
Match: R7Q414_CHOCR (Transcription initiation factor TFIID subunit 2 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q414_CHOCR)

HSP 1 Score: 261 bits (666), Expect = 3.840e-76
Identity = 116/229 (50.66%), Postives = 164/229 (71.62%), Query Frame = 0
Query:    2 IRGIIGTDVRNIVRQWASHPGILRLQVAYHYNARKHTIELAIKQDSAGHGSR-KGKEGLRFTGTINIRVMETEGEYDHSVEVSDSVFITEIPCHSRRAKHKSGAQAEKEFNENPARASPILWMRFDPDQEWCMDCNFRQTKSAWISVLNSGRDAMGQFEACRGLAGSGHQVIVNKLLTVLKDEQIYWRVRAEAARILSSTDEGLKKLLSYYRSCYAEKSKEGSGVLLPH 229
            +R I GTD+R++VR WA+  G+ RL++ Y YN R+H +E A+KQ+    G    G+EGL FTG++++RVME EG  +H+VE+ D   + ++PCHS RAKHKS +QAEKEFNENPARASP+LW+R DPD EWC+D  F+Q++ +W +++   RDAMGQ EACRGL G   +     LL +++DE++YWRVRAEAAR+L++   GL  LL Y+R  Y + S    G++ P+
Sbjct:  583 LRAICGTDLRSLVRLWAASTGVPRLRIGYQYNPRRHCLEFAVKQEGIVKGETYDGREGLVFTGSLHVRVMEIEGASEHTVEIRDPFVVIDVPCHSHRAKHKSASQAEKEFNENPARASPVLWVRIDPDAEWCIDVVFKQSEDSWTALVKGERDAMGQVEACRGLRGFKSEASAKALLVIVEDERLYWRVRAEAARVLATYKGGLGMLLKYFREFYFDSSSGKLGLVRPN 811          
BLAST of Gcaud7566.t1 vs. uniprot
Match: A0A7S0BEV4_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BEV4_9RHOD)

HSP 1 Score: 146 bits (369), Expect = 2.640e-38
Identity = 66/151 (43.71%), Postives = 97/151 (64.24%), Query Frame = 0
Query:   75 EYDHSVEVSDSVFITEIPCHSRRAKHKSGAQAEKEFNENPARASPILWMRFDPDQEWCMDCNFRQTKSAWISVLNSGRDAMGQFEACRGLAGSGHQVIVNKLLTVLKDEQIYWRVRAEAARILSST------DEGLKKLLSYYRSCYAEKS 219
            ++DH V+V D + + E+PCHSRR+KHKS AQAEKEF E+P  + P+LW+R DPD EW    +FRQ   AW+  L   RD +GQ+EAC+GL  +   + +N L   L + ++Y+RVR  AA  L+++        GL K+LS++R  +  +S
Sbjct:    1 QHDHLVDVRDEMHVLELPCHSRRSKHKSAAQAEKEFKEDPLGSCPVLWVRIDPDVEWAKSMDFRQPHYAWMQALKMERDVVGQYEACQGLTNAAEDIFINALSDTLSNGKLYYRVRTMAAAALATSYVESDQTAGLNKVLSFFRRRFMYES 151          
BLAST of Gcaud7566.t1 vs. uniprot
Match: A0A0R3SQL3_HYMDI (Transcription initiation factor TFIID subunit 2 n=3 Tax=Hymenolepididae TaxID=6214 RepID=A0A0R3SQL3_HYMDI)

HSP 1 Score: 112 bits (281), Expect = 1.260e-24
Identity = 55/204 (26.96%), Postives = 106/204 (51.96%), Query Frame = 0
Query:    1 LIRGIIGTDVRNIVRQWASHPGILRLQVAYHYNARKHTIELAIKQDSAGHGSRKGKEGLRFTGTINIRVMETEGEYDHSVEVSDSVFITEIPCHSRRAKHK-------SGAQAEKEFNENPARASPILWMRFDPDQEWCMDCNFRQTKSAWISVLNSGRDAMGQFEACRGLAGSGHQVIVNKLLTVLKDEQIYWRVRAEAARIL 197
            +I  + G D+ N +  W  + G +RL V +++N +++ +E+ +K+D    G       + + G +   + E +G + H+ ++ +     ++ CHS+  KHK       +G + E + +   +  SP+LW+R DP+       N  Q  ++W  +L+  RD +GQ EA   L+        + LL+++ D+Q+Y+RVR EA  +L
Sbjct:  542 IISTVTGQDIGNYLDTWVYNSGHVRLNVKFNFNRKRNVVEIDLKEDRQSEGH------VSYLGPMTALLQELDGPFMHTFKLEEGRTTRDLQCHSKSRKHKKKKIPLSNGEEVEMDISRIDSD-SPLLWLRLDPELSVIRSINIEQADNSWYLMLSYDRDCLGQLEAVHALSKFPSPETRHALLSIIADDQMYYRVRTEACNVL 738          
BLAST of Gcaud7566.t1 vs. uniprot
Match: A0A813MC17_9BILA (Transcription initiation factor TFIID subunit 2 n=1 Tax=Brachionus calyciflorus TaxID=104777 RepID=A0A813MC17_9BILA)

HSP 1 Score: 97.1 bits (240), Expect = 3.450e-19
Identity = 60/210 (28.57%), Postives = 107/210 (50.95%), Query Frame = 0
Query:    9 DVRNIVRQWASHPGILRLQVAYHYNARKHTIELAIKQDSAGHGSRKGKEGLRFTGTINIRVMETEGEYDHSVEVSDSVFIT-EIPCHSRRAKHK-------SGAQAEKEFNENPARASPILWMRFDPDQEWCMDCNFRQTKSAWISVLNSGRDAMGQFEACRGLAGSGHQVIVNKLLTVLKDEQIYWRVRAEAARILSSTDEGLKKLLSY 210
            D++ IV  W   PG+ R   ++ +N +K+TIEL IKQD     ++KG    ++ G I I   E +G + H++ + D++    +I CHS+  K+K       +G + + + +      SPILW+R DPD +   +  F Q    W +     ++   Q ++   L     Q   N L++++++ +I++RVR +AA  L+      K + SY
Sbjct:  771 DIKPIVENWVYKPGVARFNSSFTFNRKKNTIELEIKQDMV---NQKGYR--KYVGPITIVFQEIDGPFTHNLTIEDNLTSKFDIACHSKGKKNKKKKIPLITGEEIDIDTSHIDTD-SPILWIRIDPDLKLLREIKFDQPDFHWQNEAKYEKEICAQLDSVEMLFKFPSQQTRNALISIIENNEIFYRVRIKAAYALAEVSN--KMIHSY 972          
BLAST of Gcaud7566.t1 vs. uniprot
Match: A0A834R130_SARSC (Transcription initiation factor TFIID subunit 2 n=2 Tax=Sarcoptes scabiei TaxID=52283 RepID=A0A834R130_SARSC)

HSP 1 Score: 93.6 bits (231), Expect = 5.280e-18
Identity = 55/205 (26.83%), Postives = 107/205 (52.20%), Query Frame = 0
Query:    2 IRGIIGTDVRNIVRQWASHPGILRLQVAYHYNARKHTIELAIKQDSAGHGSRKGKEGLRFTGTINIRVMETEGEYDHSVEVSDSVFITEIPCHSRRAKHK-------SGAQAEKEFNENPARASPILWMRFDPDQEWCMDCNFRQTKSAWISVLNSGRDAMGQFEACRGLAGS-GHQVIVNKLLTVLKDEQIYWRVRAEAARILS 198
            I  + G ++   ++QW    G +++  ++ +N +++T+EL I+Q    H ++ G    R+ G I I + E +G + H++++ D V   ++ CHS+  ++K       +G + + + +      SP+LW+R DP+     +    Q    W   L   +D + Q E+ R L     + VI N LL ++ ++Q+++RVR +AA  LS
Sbjct:  519 ISTVTGKNIDTFLKQWVFQGGHVKITGSFIFNRKRNTVELEIRQL---HLNQMGV--WRYLGPIMIWLQELDGTFKHTLQIEDYVSKHDLTCHSKSRRNKKKKIPLFTGEEIDMDLSAMDPD-SPVLWLRIDPEMNLIREVILEQPDFQWHYQLRYEKDVIAQLESLRILDNYFSNPVIRNVLLEIINNDQVFYRVRCQAAFCLS 717          
BLAST of Gcaud7566.t1 vs. uniprot
Match: A0A6P6Y2X7_DERPT (Transcription initiation factor TFIID subunit 2 n=1 Tax=Dermatophagoides pteronyssinus TaxID=6956 RepID=A0A6P6Y2X7_DERPT)

HSP 1 Score: 92.4 bits (228), Expect = 1.320e-17
Identity = 59/233 (25.32%), Postives = 115/233 (49.36%), Query Frame = 0
Query:    2 IRGIIGTDVRNIVRQWASHPGILRLQVAYHYNARKHTIELAIKQDSAGHGSRKGKEGLRFTGTINIRVMETEGEYDHSVEVSDSVFITEIPCHSRRAKHK-------SGAQAEKEFNENPARASPILWMRFDPDQEWCMDCNFRQTKSAWISVLNSGRDAMGQFEACRGLAG-SGHQVIVNKLLTVLKDEQIYWRVRAEAARIL-------SSTDEGLKKLLSYYRSCYAEKS 219
            I  + G ++   ++QW    G ++L  ++ ++ R++T++L I+Q    H  + G    ++ G + I + E +G + H++++ D+V   +I CHS+  ++K       +G + + + +    + SP+LW+R DP+     +    Q    W+  L   RD + Q E+   L   S +  I N L  +L ++QI++RVR EAA  L        S   G + ++  +R  +   S
Sbjct:  504 ISTVTGKNIDTFLKQWVFQGGHVKLTGSFVFHRRRNTVQLEIRQV---HVHKTGV--WQYLGPLMIWLQELDGTFKHNLQIEDNVSKHDIVCHSKSRRNKKKKIPLCTGEEIDMDLSAMD-QDSPVLWLRIDPEMNLLREVILEQPDYQWLYQLRYERDIIAQLESLAILDNYSTNSSIRNTLSEILSNDQIFYRVRCEAAFCLRKVANKVGSPYNGPQTMIKLFRKMFGSSS 730          
BLAST of Gcaud7566.t1 vs. uniprot
Match: A0A1Y3BPE8_EURMA (Transcription initiation factor TFIID subunit 2 (Fragment) n=1 Tax=Euroglyphus maynei TaxID=6958 RepID=A0A1Y3BPE8_EURMA)

HSP 1 Score: 89.0 bits (219), Expect = 1.680e-16
Identity = 58/233 (24.89%), Postives = 114/233 (48.93%), Query Frame = 0
Query:    2 IRGIIGTDVRNIVRQWASHPGILRLQVAYHYNARKHTIELAIKQDSAGHGSRKGKEGLRFTGTINIRVMETEGEYDHSVEVSDSVFITEIPCHSRRAKHK-------SGAQAEKEFNENPARASPILWMRFDPDQEWCMDCNFRQTKSAWISVLNSGRDAMGQFEACRGLAG-SGHQVIVNKLLTVLKDEQIYWRVRAEAARIL-------SSTDEGLKKLLSYYRSCYAEKS 219
            I  + G ++   ++QW    G ++L  ++ ++ R++T+ L I+Q    H ++ G    ++ G + I + E +G + H++++ D++   +I CHS+  ++K       +G + + + +    + SP+LW+R DP+     +    Q    W   L   RD + Q E+   L   S +  I N L  +L ++QI++RVR EAA  L        S   G + ++  +R  +   S
Sbjct:  325 ISTVTGKNIDTFLKQWVFQGGHVKLTGSFVFHRRRNTVLLEIRQV---HVNKTGV--WQYLGPLMIWLQELDGTFKHNLQIEDNISKHDITCHSKSRRNKKKKIPLCTGEEIDMDLSAMD-QDSPVLWLRIDPEMNLLREVILEQPDYQWQYQLRYERDIIAQLESLAILDNYSTNSTIRNTLSEILGNDQIFYRVRCEAAFCLRKVANKVGSQYNGPQTMIKLFRKLFGSPS 551          
The following BLAST results are available for this feature:
BLAST of Gcaud7566.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A2V3J4J5_9FLOR3.620e-12482.53Transcription initiation factor TFIID subunit 2 n=... [more]
R7Q414_CHOCR3.840e-7650.66Transcription initiation factor TFIID subunit 2 n=... [more]
A0A7S0BEV4_9RHOD2.640e-3843.71Hypothetical protein (Fragment) n=1 Tax=Rhodosorus... [more]
A0A0R3SQL3_HYMDI1.260e-2426.96Transcription initiation factor TFIID subunit 2 n=... [more]
A0A813MC17_9BILA3.450e-1928.57Transcription initiation factor TFIID subunit 2 n=... [more]
A0A834R130_SARSC5.280e-1826.83Transcription initiation factor TFIID subunit 2 n=... [more]
A0A6P6Y2X7_DERPT1.320e-1725.32Transcription initiation factor TFIID subunit 2 n=... [more]
A0A1Y3BPE8_EURMA1.680e-1624.89Transcription initiation factor TFIID subunit 2 (F... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR037813Transcription initiation factor TFIID subunit 2PANTHERPTHR15137TRANSCRIPTION INITIATION FACTOR TFIIDcoord: 4..220

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1858_length_8045_cov_4.168972contigNODE_1858_length_8045_cov_4.168972:7005..7769 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7566.t1Gcaud7566.t1Gracilaria caudata M_176_S67 malemRNANODE_1858_length_8045_cov_4.168972 7005..7769 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud7566.t1 ID=Gcaud7566.t1|Name=Gcaud7566.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=255bp
LIRGIIGTDVRNIVRQWASHPGILRLQVAYHYNARKHTIELAIKQDSAGH
GSRKGKEGLRFTGTINIRVMETEGEYDHSVEVSDSVFITEIPCHSRRAKH
KSGAQAEKEFNENPARASPILWMRFDPDQEWCMDCNFRQTKSAWISVLNS
GRDAMGQFEACRGLAGSGHQVIVNKLLTVLKDEQIYWRVRAEAARILSST
DEGLKKLLSYYRSCYAEKSKEGSGVLLPHSXXXXRLRGRPFFVRPISLLC
KSSD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR037813TAF2