Gcaud7481.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud7481.t1
Unique NameGcaud7481.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length358
Homology
BLAST of Gcaud7481.t1 vs. uniprot
Match: A0A2V3IFE4_9FLOR (Cleavage stimulating factor 64 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IFE4_9FLOR)

HSP 1 Score: 453 bits (1165), Expect = 7.390e-157
Identity = 281/348 (80.75%), Postives = 302/348 (86.78%), Query Frame = 0
Query:    1 MGRPPGTTVFVGNISYDTTEEQLNEVFSQVGNVVNFRLMHDNETGRAKGYGFCEYEDKETAMSARRNLNGTMLNGRPLRVDFTDSDKQIAARNGPNLNQNISAPPNKPGAQNIAQKPPHQMPDHPNMQHAGLPPALASANPSMERMPLPEIHQIMVHLKKAIVQNPNEMRDLLLANPRLAQAIMQGQFMLGMVPPPMMPTPQSHXXXXXXXXXXXXXXXXXSVPPRNQPXXXXXXXXXXXXXXXXXXXXXXXXXNPAPPPQNGPHPQPNMPHGGMQMPGMPFAQGMGEQEAFLQQVMSMTQEEISQLPTEYLNYVLQIKQFLAMHGAGGLNPGMNQPIPPGMPPGGPH 348
            MGRPPGTTVFVGNISYDTTEEQL+EVFSQVGNVVNFRLMHD+ETGRAKGYGFCEYEDKETAMSARRNLNGTMLNGRPLRVDFTDSDKQIAARNGPN+ QNI+ P +K G QN+ QK  HQ+P HP++QHA LPPALASANPSMERM LPE+HQ M+HLKKAIVQNPNEMRDLLLANPRLAQAIMQGQ MLGMVPPPMMP PQ+HXXXXXXXXXXXXXXXXX        XXXXX  XXXXXXXXXXXXXXXXXX               MPH  MQMPG+PFAQGMGEQEA LQ VM+M+QEEI+QLP E+ NYVL++KQFLAMHGAGG+NPGMNQP+PPGMPPGG H
Sbjct:    1 MGRPPGTTVFVGNISYDTTEEQLHEVFSQVGNVVNFRLMHDSETGRAKGYGFCEYEDKETAMSARRNLNGTMLNGRPLRVDFTDSDKQIAARNGPNIAQNITPPASKQGGQNVGQKNVHQVP-HPHLQHAALPPALASANPSMERMSLPEVHQTMLHLKKAIVQNPNEMRDLLLANPRLAQAIMQGQLMLGMVPPPMMPAPQAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHVXXXXXXXXXXXXXXXXXXXXX------------MPHALMQMPGLPFAQGMGEQEALLQGVMNMSQEEINQLPAEHRNYVLELKQFLAMHGAGGINPGMNQPMPPGMPPGGNH 335          
BLAST of Gcaud7481.t1 vs. uniprot
Match: R7QCA3_CHOCR (RNA recognition motif-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QCA3_CHOCR)

HSP 1 Score: 250 bits (638), Expect = 2.860e-78
Identity = 136/199 (68.34%), Postives = 156/199 (78.39%), Query Frame = 0
Query:    1 MGRPPGTTVFVGNISYDTTEEQLNEVFSQVGNVVNFRLMHDNETGRAKGYGFCEYEDKETAMSARRNLNGTMLNGRPLRVDFTDSDKQIAARNGPNLNQNISAPPNKPGAQNIAQKPPHQMPDHPNMQHAGLPPALASANPSMERMPLPEIHQIMVHLKKAIVQNPNEMRDLLLANPRLAQAIMQGQFMLGMVPPPMMP 199
            MGRPPGTTVFVGNISYDTTE+QL EVFS+VGNVV+FRLM+D++TGRAKG+GFCEYEDKETAMSARRNLNGT LNGRPLRVD TDSDKQ AA NG      +S  P+ P A++ A  PP     +P      +P  LASANPSM  M   EIH  M+HLKKA++QN  ++RDLLLANPRLA AI+ GQ MLGMVPPPM+P
Sbjct:    1 MGRPPGTTVFVGNISYDTTEDQLKEVFSEVGNVVSFRLMYDHDTGRAKGFGFCEYEDKETAMSARRNLNGTQLNGRPLRVDLTDSDKQAAAANG------LSLAPD-PHAKSPA--PPXXXXXNP-----AIPAPLASANPSMAAMTPAEIHAAMLHLKKAVLQNRADLRDLLLANPRLAHAILHGQIMLGMVPPPMLP 185          
BLAST of Gcaud7481.t1 vs. uniprot
Match: UPI001E1E0131 (cleavage stimulating factor 64-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1E0131)

HSP 1 Score: 184 bits (468), Expect = 3.820e-50
Identity = 101/191 (52.88%), Postives = 126/191 (65.97%), Query Frame = 0
Query:    6 GTTVFVGNISYDTTEEQLNEVFSQVGNVVNFRLMHDNETGRAKGYGFCEYEDKETAMSARRNLNGTMLNGRPLRVDFTDSDKQIAARNGPNLNQNISAPPNKPGAQNIAQKPPHQMPDHPNMQHAGLPPALASANPSMERMPLPEIHQIMVHLKKAIVQNPNEMRDLLLANPRLAQAIMQGQFMLGMVPPP 196
            G TVFVGNI+YD TE+QL ++FSQVG VVNFR+++D ETGR KGYGFCEYED ETAMSARRNLNG  LNGR LRVDFT+SDK   A                                  N +H  LP AL+  NPS+  + LP+IH++M+ LK+A  + PN++RDLL  +P+LA A++QGQ MLGM+P P
Sbjct:   10 GATVFVGNINYDATEDQLKDIFSQVGVVVNFRVVYDQETGRPKGYGFCEYEDAETAMSARRNLNGYELNGRQLRVDFTESDKPGNAATAAGGAGXXXXXXXXXXXXXXXXXXXXXXGVTKNSEHL-LPDALSGPNPSLAMLALPQIHEVMLQLKRAATEFPNDLRDLLANSPQLAHAVLQGQIMLGMIPLP 199          
BLAST of Gcaud7481.t1 vs. uniprot
Match: M2XKX0_GALSU (mRNA splicing factor, putative isoform 2 n=2 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XKX0_GALSU)

HSP 1 Score: 159 bits (401), Expect = 2.160e-42
Identity = 95/201 (47.26%), Postives = 129/201 (64.18%), Query Frame = 0
Query:   11 VGNISYDTTEEQLNEVFSQVGNVVNFRLMHDNETGRAKGYGFCEYEDKETAMSARRNLNGTMLNGRPLRVDFTDSDKQIAARNGPNL---NQNISAPPN-KPGAQNIAQKPPHQMPDHPNMQHAGLPPALASANPSMERMPLPEIHQIMVHLKKAIVQNPNEMRDLLLANPRLAQAIMQGQFMLGMVPP---PMMPTPQSH 204
            VGNI+Y+T+EEQL E+ SQ+G +++FR+++D ETG+ KGY FCEY D E A+SA RNLNGT LNGR LRVD  DSDK+   ++  N+   N N S   N K GA N +           N+Q  GL  +   A  S+E++   +IH+IM+ +K    QNP ++R LLLANP+L  A++QGQ MLG+ PP   P   TP S+
Sbjct:   26 VGNIAYNTSEEQLQEILSQIGPILSFRVVYDRETGKPKGYAFCEYPDAEMALSAIRNLNGTELNGRTLRVDLADSDKRELGQSAANMETGNNNPSTASNMKAGALNTSG-------GTGNIQ--GL--SNLGAKGSLEQLSCQQIHEIMLQMKALAQQNPEQVRQLLLANPQLTYALLQGQIMLGLAPPTGWPSQSTPSSN 215          
BLAST of Gcaud7481.t1 vs. uniprot
Match: UPI0006B0A5D9 (cleavage stimulation factor subunit 2-like n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI0006B0A5D9)

HSP 1 Score: 151 bits (381), Expect = 8.960e-38
Identity = 86/188 (45.74%), Postives = 119/188 (63.30%), Query Frame = 0
Query:    8 TVFVGNISYDTTEEQLNEVFSQVGNVVNFRLMHDNETGRAKGYGFCEYEDKETAMSARRNLNGTMLNGRPLRVDFTDSDKQIAARNGPNLNQNISAPPNKPGAQNIAQKPPHQMPDHPNMQHAGLPPALASANPSMERMPLPEIHQIMVHLKKAIVQNPNEMRDLLLANPRLAQAIMQGQFMLGMVPP 195
            +VFVGNI Y+ TEEQL ++FS+VG VV+FRL++D ETG+ KGYGFCEY+D+ETA+SA RNLNG  LNGRPLRVD   S+K        NL  ++  PP              + P  P ++    P A++ A  S+   P  ++ ++M  +K  I  NPNE R++LL NP+LA A++Q Q M+ +V P
Sbjct:   12 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYKDQETALSAMRNLNGYELNGRPLRVDNAASEKNKEELK--NLQASLGGPPT-------------ESPYGPEVEPEKAPEAISKAVASL---PPEQMFELMKQMKLCIQNNPNEARNMLLQNPQLAYALLQAQVMMRIVDP 181          
BLAST of Gcaud7481.t1 vs. uniprot
Match: A0A4Y2BUI6_ARAVE (Cleavage stimulation factor subunit 2 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2BUI6_ARAVE)

HSP 1 Score: 142 bits (358), Expect = 4.710e-37
Identity = 80/188 (42.55%), Postives = 115/188 (61.17%), Query Frame = 0
Query:    8 TVFVGNISYDTTEEQLNEVFSQVGNVVNFRLMHDNETGRAKGYGFCEYEDKETAMSARRNLNGTMLNGRPLRVDFTDSDKQIAARNGPNLNQNISAPPNKPGAQNIAQKPPHQMPDHPNMQHAGLPPALASANPSMERMPLPEIHQIMVHLKKAIVQNPNEMRDLLLANPRLAQAIMQGQFMLGMVPP 195
            +VFVGNI Y+ TEEQL ++F++VG VV+FRL++D ETG+ KGYGFCEY+D+E A+SA RNLN   LNGR LRVD   S+K        NL  ++  PP              + P  P +     P  +A     M  +P  +++++M+ +K  I  NPNE R+LL+ NP+LA A++Q Q ++ +V P
Sbjct:   17 SVFVGNIPYEATEEQLKDIFAEVGPVVSFRLVYDRETGKPKGYGFCEYKDQEMALSAMRNLNSYELNGRALRVDNAASEKSKEELK--NLQASLGGPP-------------VESPYGPEVTPEKAPETIAKV---MSSVPPEQLYELMIQMKTCIENNPNEARNLLIQNPQLAYALLQAQVIMKVVDP 186          
BLAST of Gcaud7481.t1 vs. uniprot
Match: V5HSI3_IXORI (Putative mrna cleavage and polyadenylation factor i complex subunit rna15 (Fragment) n=1 Tax=Ixodes ricinus TaxID=34613 RepID=V5HSI3_IXORI)

HSP 1 Score: 142 bits (358), Expect = 5.260e-37
Identity = 83/188 (44.15%), Postives = 117/188 (62.23%), Query Frame = 0
Query:    8 TVFVGNISYDTTEEQLNEVFSQVGNVVNFRLMHDNETGRAKGYGFCEYEDKETAMSARRNLNGTMLNGRPLRVDFTDSDKQIAARNGPNLNQNISAPPNKPGAQNIAQKPPHQMPDHPNMQHAGLPPALASANPSMERMPLPEIHQIMVHLKKAIVQNPNEMRDLLLANPRLAQAIMQGQFMLGMVPP 195
            +VFVGNI Y+ TEEQL ++FS+VG VV+FRL++D ETG+ KGYGFCEY+D+ETA+SA RNLN   LNGRPLRVD   S+K        NL  ++  PP +  +   A+  P + P+  +   A LPP               ++ ++M  +K  I  NP E R++LL NP+LA A++Q Q ++ +V P
Sbjct:    9 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYKDQETALSAMRNLNAFDLNGRPLRVDNAASEKSKEELK--NLQASLGGPPVE--SPYGAEVEPERAPEAISKAVASLPPE--------------QMFELMKQMKLCIQNNPGEARNMLLQNPQLAYALLQAQVIMKVVEP 178          
BLAST of Gcaud7481.t1 vs. uniprot
Match: A0A6P6B8V6_DURZI (cleavage stimulating factor 64 isoform X1 n=3 Tax=Durio zibethinus TaxID=66656 RepID=A0A6P6B8V6_DURZI)

HSP 1 Score: 148 bits (373), Expect = 1.370e-36
Identity = 96/218 (44.04%), Postives = 125/218 (57.34%), Query Frame = 0
Query:    9 VFVGNISYDTTEEQLNEVFSQVGNVVNFRLMHDNETGRAKGYGFCEYEDKETAMSARRNLNGTMLNGRPLRVDFTDSDK-----QIAARNGPNLNQNISAPP--------NKPGAQNIAQKPPHQMPDHPNMQHAGLPPALASANPS------------MERMPLPEIHQIMVHLKKAIVQNPNEMRDLLLANPRLAQAIMQGQFMLGMVPPPMMPTP 201
            VFVGNI YD TEEQL E+  +VG VV+FRL+ D ETG+ KGYGFCEY+D+ETA+SARRNL G  +NGR LRVDF ++DK     +   R GP L  N+   P         +P   ++A      M        AGL P   +A PS            + +M   ++++IM  LKK + QN    R+LLL  P+L +AI Q Q MLGMVPP ++  P
Sbjct:    9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQGRGGPGLTTNVVGGPAVLGESVHQQPIGLHLAITAAALMAGALGGVQAGLQPN-QNALPSQPVPASDPLTLHLAKMSRSQLNEIMSELKKMVTQNKELARELLLTKPQLLKAIFQAQIMLGMVPPQVLQMP 225          
BLAST of Gcaud7481.t1 vs. uniprot
Match: A0A7S3EJ57_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EJ57_9RHOD)

HSP 1 Score: 142 bits (359), Expect = 1.940e-36
Identity = 86/200 (43.00%), Postives = 120/200 (60.00%), Query Frame = 0
Query:    2 GRPPGTTVFVGNISYDTTEEQLNEVFSQVGNVVNFRLMHDNETGRAKGYGFCEYEDKETAMSARRNLNGTMLNGRPLRVDFTDSDK-QIAARNGPNLNQNISAPPNKPGAQNIAQKPPHQMPDHPNMQHAGLPPALASA-NPSMERMPLPEIHQIMVHLKKAIVQNPNEMRDLLLANPRLAQAIMQGQFMLGMVPPPMMP 199
            G+P   TVFVGNI +DTTEE L E+FSQVG V +FRL++D +TG+ KG+GFCEYED ETAMSA RNLNG  +NGRPLRV  ++ DK ++  + G  + Q  ++  N  G                     G     AS  N   ERM   ++  +M+++K+ I ++   +R LL  +P +  A++QGQ MLGMVP  ++P
Sbjct:    5 GQP--ATVFVGNIPFDTTEEHLKEIFSQVGVVSSFRLVYDQQTGKPKGFGFCEYEDAETAMSALRNLNGVEVNGRPLRVSLSEHDKSRVQEQTGQTVPQGKNSQGNTGGG--------------------GRGDGAASRQNVITERMTPQQVFDVMLNMKELIQKDEGTVRTLLNNDPNMTYALLQGQIMLGMVPAHVIP 182          
BLAST of Gcaud7481.t1 vs. uniprot
Match: A0A2P5WUM1_GOSBA (RRM domain-containing protein n=1 Tax=Gossypium barbadense TaxID=3634 RepID=A0A2P5WUM1_GOSBA)

HSP 1 Score: 142 bits (359), Expect = 3.060e-36
Identity = 96/226 (42.48%), Postives = 125/226 (55.31%), Query Frame = 0
Query:    9 VFVGNISYDTTEEQLNEVFSQVGNVVNFRLMHDNETGRAKGYGFCEYEDKETAMSARRNLNGTMLNGRPLRVDFTDSDK-----QIAARNGPNLNQNISAPPNKPGAQNIAQKPPHQMPDHPNMQHAGLPPALASAN----------------PS------------MERMPLPEIHQIMVHLKKAIVQNPNEMRDLLLANPRLAQAIMQGQFMLGMVPPPMMPTP 201
            VFVGNI YD TEEQL E+  +VG VV+FRL+ D ETG+ KGYGFCEY+D+ETA+SARRNL G  +NGR LRVDF ++DK     +   R GP L  N   P  + G Q +  +  H       +Q  GL  A+ +A                 PS            + RM   ++++IM  LKK   QN    R+LLL+ P+L +AI Q Q MLGMV P ++  P
Sbjct:    9 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQGRGGPGLATNFD-PQKQLGGQAVHGESFH-------LQPIGLHSAITAAALMAEALGGVQQNQNALPSQPVPTSDPLTLHLARMSRNQLNEIMSELKKMATQNKELARELLLSKPQLLKAIFQAQIMLGMVTPQVLQMP 226          
The following BLAST results are available for this feature:
BLAST of Gcaud7481.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IFE4_9FLOR7.390e-15780.75Cleavage stimulating factor 64 n=1 Tax=Gracilariop... [more]
R7QCA3_CHOCR2.860e-7868.34RNA recognition motif-containing protein n=1 Tax=C... [more]
UPI001E1E01313.820e-5052.88cleavage stimulating factor 64-like n=1 Tax=Mercen... [more]
M2XKX0_GALSU2.160e-4247.26mRNA splicing factor, putative isoform 2 n=2 Tax=G... [more]
UPI0006B0A5D98.960e-3845.74cleavage stimulation factor subunit 2-like n=1 Tax... [more]
A0A4Y2BUI6_ARAVE4.710e-3742.55Cleavage stimulation factor subunit 2 n=1 Tax=Aran... [more]
V5HSI3_IXORI5.260e-3744.15Putative mrna cleavage and polyadenylation factor ... [more]
A0A6P6B8V6_DURZI1.370e-3644.04cleavage stimulating factor 64 isoform X1 n=3 Tax=... [more]
A0A7S3EJ57_9RHOD1.940e-3643.00Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A2P5WUM1_GOSBA3.060e-3642.48RRM domain-containing protein n=1 Tax=Gossypium ba... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 8..81
e-value: 3.2E-29
score: 113.1
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 9..79
e-value: 6.7E-24
score: 83.5
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 7..85
score: 21.002758
IPR025742Cleavage stimulation factor subunit 2, hinge domainPFAMPF14327CSTF2_hingecoord: 143..196
e-value: 1.5E-9
score: 38.2
IPR038192Transcription termination and cleavage factor, C-terminal domain superfamilyGENE3D1.10.20.70coord: 286..327
e-value: 5.2E-8
score: 34.2
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 2..112
e-value: 3.7E-31
score: 110.1
IPR026896Transcription termination and cleavage factor, C-terminal domainPFAMPF14304CSTF_Ccoord: 288..319
e-value: 6.4E-6
score: 25.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 194..267
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 330..357
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 191..288
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 336..351
NoneNo IPR availablePANTHERPTHR45735CLEAVAGE STIMULATION FACTOR SUBUNIT 2coord: 6..324
NoneNo IPR availableCDDcd12398RRM_CSTF2_RNA15_likecoord: 9..83
e-value: 8.20757E-43
score: 141.222
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 4..95

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1333_length_11336_cov_4.600178contigNODE_1333_length_11336_cov_4.600178:9837..10910 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7481.t1Gcaud7481.t1Gracilaria caudata M_176_S67 malemRNANODE_1333_length_11336_cov_4.600178 9837..10910 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud7481.t1 ID=Gcaud7481.t1|Name=Gcaud7481.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=358bp
MGRPPGTTVFVGNISYDTTEEQLNEVFSQVGNVVNFRLMHDNETGRAKGY
GFCEYEDKETAMSARRNLNGTMLNGRPLRVDFTDSDKQIAARNGPNLNQN
ISAPPNKPGAQNIAQKPPHQMPDHPNMQHAGLPPALASANPSMERMPLPE
IHQIMVHLKKAIVQNPNEMRDLLLANPRLAQAIMQGQFMLGMVPPPMMPT
PQSHPPMQQRPPPQQRQRQPPSVPPRNQPPPRNQPPPRNQPPPPLSHVAP
PTHVNPAPPPQNGPHPQPNMPHGGMQMPGMPFAQGMGEQEAFLQQVMSMT
QEEISQLPTEYLNYVLQIKQFLAMHGAGGLNPGMNQPIPPGMPPGGPHPP
QPQKQFR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR025742CSTF2_hinge
IPR038192CSTF_C_sf
IPR012677Nucleotide-bd_a/b_plait_sf
IPR026896CSTF_C
IPR035979RBD_domain_sf