Gcaud7450.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud7450.t1
Unique NameGcaud7450.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length189
Homology
BLAST of Gcaud7450.t1 vs. uniprot
Match: A0A2V3J5P9_9FLOR (Chlorophyll a-b binding protein 6, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5P9_9FLOR)

HSP 1 Score: 326 bits (835), Expect = 1.070e-111
Identity = 155/213 (72.77%), Postives = 172/213 (80.75%), Query Frame = 0
Query:    1 MSAFIAPVVTGFSAALRGQA-------------------------PATLDDDSIIGNVGFDPLNLSTVFNMKFMQEAEIKHCRVAMLGVLGYIVPELFQFPWGKPLNPIEAHDFFVKTGGMSQILLFVSFLEIFGAIALKETLEGDRAPGYFGFDPLGLGKDPEKFKKYHLSEIKNGRLAMCAFGGLYHATLLTKQGTLDQLTHFQALPGHLY 188
            M AF+AP VTGFSA+LRG+A                         PATLDD SI+GNVGFDPLNLS VF++KFMQEAEIKHCRVAML VLGY+VPE F FPWGK LNPIEAHDFFVKTGGMSQILLFVSF E+FG +AL  TL+G+RAPGYFGFDPLGLGKDPEKFK+YHLSE+KNGRLAMCAFGG YHATLLT QG  +QL++F+ALPGHLY
Sbjct:    1 MFAFVAPAVTGFSASLRGKAVCNAPRVSRSAVSMKVSPSMPFMEQPATLDDGSIVGNVGFDPLNLSQVFDLKFMQEAEIKHCRVAMLAVLGYVVPEFFLFPWGKTLNPIEAHDFFVKTGGMSQILLFVSFFEVFGTLALIRTLQGERAPGYFGFDPLGLGKDPEKFKRYHLSELKNGRLAMCAFGGFYHATLLTNQGVFEQLSNFKALPGHLY 213          
BLAST of Gcaud7450.t1 vs. uniprot
Match: R7QUA5_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QUA5_CHOCR)

HSP 1 Score: 284 bits (727), Expect = 3.090e-95
Identity = 137/209 (65.55%), Postives = 159/209 (76.08%), Query Frame = 0
Query:    1 MSAFIAPVVTGFSAALRG-------------------------QAPATLDDDSIIGNVGFDPLNLSTVFNMKFMQEAEIKHCRVAMLGVLGYIVPELFQFPWGKPLNPIEAHDFFVKTGGMSQILLFVSFLEIFGAIALKETLEGDRAPGYFGFDPLGLGKDPEKFKKYHLSEIKNGRLAMCAFGGLYHATLLTKQGTLDQLTHFQALP 184
            M+AF+APVVTGFS++L G                         + PA+LDD SI GN GFDP NLS  FN+K+MQEAEIKHCRVAMLGVLG ++PE+ +FP  K + P EAHDFFVKTGGMSQILLFVSF EIFG++ALK TL+G RAPGYF FDPLGLGK+P+ FKKY LSEIKNGRLAMCAFGGLYHA L++K G +DQLTHFQ +P
Sbjct:    1 MTAFVAPVVTGFSSSLSGTRVCRAATVSRHAVSMKISPAMPFMEQPASLDDPSIPGNAGFDPFNLSGAFNLKWMQEAEIKHCRVAMLGVLGVVIPEIIRFPGVKAMTPTEAHDFFVKTGGMSQILLFVSFFEIFGSVALKATLDGTRAPGYFAFDPLGLGKNPDVFKKYQLSEIKNGRLAMCAFGGLYHAGLVSKTGVIDQLTHFQGVP 209          
BLAST of Gcaud7450.t1 vs. uniprot
Match: A0A5J4ZAY0_PORPP (Chlorophyll a-b binding protein 1B-21, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4ZAY0_PORPP)

HSP 1 Score: 199 bits (505), Expect = 1.450e-61
Identity = 91/167 (54.49%), Postives = 121/167 (72.46%), Query Frame = 0
Query:   19 QAPATLDDDSIIGNVGFDPLNLSTVFNMKFMQEAEIKHCRVAMLGVLGYIVPELFQFPW--GKPLNPIEAHDFFVKTGGMSQILLFVSFLEIFGAIALKETLEGDRAPGYFGFDPLGLGKDPEKFKKYHLSEIKNGRLAMCAFGGLYHATLLTKQGTLDQLTHFQAL 183
            +AP  LD  S++G+VGFDPL  +  F++K+M+EAE+KHCR+ ML VLG++V E+F+ P   G P    +AHD+FV  G + QILLF+SF E+FG +AL ET++G R PG FGFDPL LGK+P  ++KY LSE+KNGRLAM A GG  H   + KQG L QL HF+ +
Sbjct:   42 EAPPALDG-SMVGDVGFDPLGFTRTFDVKWMREAELKHCRICMLAVLGFVVQEIFRLPMYSGAPKLATDAHDYFVSQGALKQILLFISFFEVFGTVALWETMQGTREPGVFGFDPLNLGKNPASYEKYALSELKNGRLAMIAVGGFIHQMWVYKQGVLYQLAHFKPM 207          
BLAST of Gcaud7450.t1 vs. uniprot
Match: A0A7S0F4D6_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0F4D6_9CRYP)

HSP 1 Score: 198 bits (504), Expect = 5.240e-61
Identity = 97/176 (55.11%), Postives = 127/176 (72.16%), Query Frame = 0
Query:   12 FSAALRGQAPATLDDDSIIGNVGFDPLNLSTVFNMKFMQEAEIKHCRVAMLGVLGYIVPELFQFPWGKPLNPIEAHDFFVKTGGMSQILLFVSFLEIFGAIALKETLEGDRAPGYFGFDPLGL--GKDPEKFKKYHLSEIKNGRLAMCAFGGLYHATLLTKQGTLDQLTHFQALPG 185
            FS ++      T  D S+ G+VGFDPL  S VF++K ++EAE+KH R+AML VLG++V E + FP+   ++PIEAHD  VK+GGMSQILL+ SFLEIFG IAL +T++G R PG F FDPLGL  GK+    +KY L+EIK+GRLAM AFGG  H   +TKQG  +QL +F+ +PG
Sbjct:   56 FSESVPFLKQPTNLDGSLPGDVGFDPLGFSEVFDVKVLREAELKHGRIAMLAVLGWLVQESYTFPFFDKVSPIEAHDLLVKSGGMSQILLWTSFLEIFGGIALFQTIQGSRYPGDFSFDPLGLSQGKNEANLEKYQLAEIKHGRLAMIAFGGFAHQYFITKQGVFEQLGNFKPIPG 231          
BLAST of Gcaud7450.t1 vs. uniprot
Match: A0A7S3A203_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A203_9RHOD)

HSP 1 Score: 194 bits (493), Expect = 8.960e-60
Identity = 95/169 (56.21%), Postives = 120/169 (71.01%), Query Frame = 0
Query:   19 QAPATLDDDSIIGNVGFDPLNLSTVFNMKFMQEAEIKHCRVAMLGVLGYIVPELFQFPWG---KPLNPIEAHDFFVKTGGMSQILLFVSFLE-IFGAIALKETLEGDRAPGYFGFDPLGLGKDPEKFKKYHLSEIKNGRLAMCAFGGLYHATLLTKQGTLDQLTHFQAL 183
            +AP  LD  ++ G+ GFDPL L+  F++K+MQEAEIKH R+ ML  LG++VPELF  PW    K +  ++AHD+FVKTGG++Q+ LF+S  E I G  AL+ T+EG RAPG FGFDPLGLGKDP K KK    E+ NGRLAMCA GG  H   + KQG LDQL HF+ +
Sbjct:   39 EAPPALDG-TLPGDNGFDPLGLTNYFDIKWMQEAEIKHGRICMLATLGFLVPELFTLPWAYFPKGILAVDAHDYFVKTGGLAQVNLFISGWEAIIGVAALQATMEGKRAPGDFGFDPLGLGKDPAKMKKNQTVELINGRLAMCAIGGFIHQQWIYKQGILDQLLHFKPM 206          
BLAST of Gcaud7450.t1 vs. uniprot
Match: Q9M441_GALSU (Light-harvesting protein n=2 Tax=Galdieria sulphuraria TaxID=130081 RepID=Q9M441_GALSU)

HSP 1 Score: 193 bits (490), Expect = 4.430e-58
Identity = 89/160 (55.62%), Postives = 117/160 (73.12%), Query Frame = 0
Query:   26 DDSIIGNVGFDPLNLSTVFNMKFMQEAEIKHCRVAMLGVLGYIVPELFQFP--WGKPLNPIEAHDFFVKTGGMSQILLFVSFLEIFGAIALKETLEGDRAPGYFGFDPLGLGKDPEKFKKYHLSEIKNGRLAMCAFGGLYHATLLTKQGTLDQLTHFQAL 183
            D ++ G+VGFDPL  + VF++K+M+EAE+KHCR+AML  LG++V EL+ FP  +   + P+ AHD +VKTGGMSQILLFV F EI    A+ + +EG R PG F FDPLGLGKDP+ F+KY  SE++NGRLAM A GG  H   +TKQG  +QL +F+ L
Sbjct:  141 DGTMAGDVGFDPLGFTNVFDVKWMREAELKHCRIAMLAALGFMVQELWTFPHPYFSKVPPVLAHDVYVKTGGMSQILLFVIFFEIISVFAVSQMMEGKREPGVFHFDPLGLGKDPDTFRKYEWSELRNGRLAMIAVGGFIHQYWVTKQGIFEQLANFKPL 300          
BLAST of Gcaud7450.t1 vs. uniprot
Match: A8KCP5_GUITH (Light harvesting complex protein 5 n=3 Tax=Guillardia theta TaxID=55529 RepID=A8KCP5_GUITH)

HSP 1 Score: 191 bits (484), Expect = 4.940e-58
Identity = 96/178 (53.93%), Postives = 123/178 (69.10%), Query Frame = 0
Query:   12 FSAALRGQAPATLDDDSIIGNVGFDPLNLSTVFNMKFMQEAEIKHCRVAMLGVLGYIVPELFQFPWGKPLNPIEAHDFFVKTGGMSQILLFVSFLEIFGAIALKETLEGDRAPGYFGFDPLGL--GKDPEKFKKYHLSEIKNGRLAMCAFGGLYHATLLTKQGTLDQLTHFQALPGHL 187
            FS ++      T  D S+ G+VGFDPL  S VF++K ++EAE+KH R+AML VLG++V E + FP+   ++PIEAHD  VK+GGMSQILL+ SFLEIFG IAL +T++G R PG F FDPLGL  GK+    +KY L+EIK+GRLAM AFGG  H   +TKQG  +QL      P  L
Sbjct:   48 FSESVPFLKQPTNLDGSLPGDVGFDPLGFSEVFDVKVLREAELKHGRIAMLAVLGWLVQESYTFPFFDKVSPIEAHDLLVKSGGMSQILLWTSFLEIFGGIALFQTIQGTRYPGDFSFDPLGLSAGKNEANLEKYQLAEIKHGRLAMIAFGGFAHQYFITKQGVFEQLGTSSPSPASL 225          
BLAST of Gcaud7450.t1 vs. uniprot
Match: L1IUF6_GUITC (Light-harvesting Chl a protein 10 n=2 Tax=Guillardia theta TaxID=55529 RepID=L1IUF6_GUITC)

HSP 1 Score: 189 bits (479), Expect = 1.480e-57
Identity = 92/173 (53.18%), Postives = 126/173 (72.83%), Query Frame = 0
Query:   12 FSAALRG-QAPATLDDDSIIGNVGFDPLNLSTVFNMKFMQEAEIKHCRVAMLGVLGYIVPELFQFPWGKPLNPIEAHDFFVKTGGMSQILLFVSFLEIFGAIALKETLEGDRAPGYFGFDPLGLGKDPEKFKKYHLSEIKNGRLAMCAFGGLYHATLLTKQGTLDQLTHFQAL 183
            FSAA+   + P+ LD  S +G+VGFDPL  S VF+++ ++EAE+KH R AML VLG+IV EL+ FP+   + P++AHD+FV+ GG SQI+ ++SF+EIFG +AL ETL+G R PG F FDPLGL KD    ++Y L+EIK+ RLAM A GG  H   +TKQ  L+QL +F++L
Sbjct:   42 FSAAVPFLKRPSNLDG-SYVGDVGFDPLGFSDVFDLRVLREAELKHGRFAMLAVLGFIVQELYTFPFFPKMAPVDAHDYFVQQGGGSQIIFWISFVEIFGVVALFETLQGKREPGDFAFDPLGLAKDEATLERYRLAEIKHSRLAMIAIGGFIHQYWVTKQTVLEQLGNFKSL 213          
BLAST of Gcaud7450.t1 vs. uniprot
Match: M2VZV1_GALSU (Light-harvesting complex protein n=2 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2VZV1_GALSU)

HSP 1 Score: 190 bits (483), Expect = 4.360e-57
Identity = 87/160 (54.37%), Postives = 115/160 (71.88%), Query Frame = 0
Query:   26 DDSIIGNVGFDPLNLSTVFNMKFMQEAEIKHCRVAMLGVLGYIVPEL--FQFPWGKPLNPIEAHDFFVKTGGMSQILLFVSFLEIFGAIALKETLEGDRAPGYFGFDPLGLGKDPEKFKKYHLSEIKNGRLAMCAFGGLYHATLLTKQGTLDQLTHFQAL 183
            D ++ G+VGFDP   + VF++K+M+EAE+KHCR+AML  LG+IV EL  F +P+   + P+ AHD +VKTGGMSQILLFV F E+    A+ + +EG R PG F FDPLGL KDP+ F+KY  SE++NGRLAM A GG  H   +TKQG  +QL +F+ L
Sbjct:  136 DGTMAGDVGFDPFGFTNVFDVKWMREAELKHCRIAMLAALGFIVQELWTFPYPYFSKVPPVLAHDVYVKTGGMSQILLFVIFFEVISLFAVSQMMEGKREPGVFHFDPLGLAKDPDTFRKYEWSELRNGRLAMIAVGGFIHQYWVTKQGIFEQLANFRPL 295          
BLAST of Gcaud7450.t1 vs. uniprot
Match: A0A5J4YN76_PORPP (Chlorophyll a-b binding protein 1B-21, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YN76_PORPP)

HSP 1 Score: 187 bits (475), Expect = 6.750e-57
Identity = 92/171 (53.80%), Postives = 121/171 (70.76%), Query Frame = 0
Query:   19 QAPATLDDDSIIGNVGFDPLNLSTVFNMKFMQEAEIKHCRVAMLGVLGYIVPELFQFPW--GKPLNPIEAHDFFVKTGGMSQILLFVSFLEIF-GAIALKETLEG--DRAPGYFGFDPLGLGKDPEKFKKYHLSEIKNGRLAMCAFGGLYHATLLTKQGTLDQLTHFQALP 184
            +APA LD  S++G+VGFDPL  S   ++KF++EAE+KHCR+ ML  LG IV E++QFP+  G P    +AHD+FVK G ++QILLF SF+E+  G   + +T+ G  DRAPGYF FDPLGLGKD  KF++Y LSE+KNGRLAM A GG  H   + K   L+QL+  + LP
Sbjct:   49 EAPAALDG-SMVGDVGFDPLGFSNYIDLKFLREAELKHCRICMLAALGIIVQEVYQFPFYSGAPRLATDAHDYFVKFGSLNQILLFASFIELVAGTPGIIQTMRGETDRAPGYFAFDPLGLGKDKAKFERYQLSELKNGRLAMIAVGGFIHQAWMAKVPVLEQLSTGKLLP 218          
The following BLAST results are available for this feature:
BLAST of Gcaud7450.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J5P9_9FLOR1.070e-11172.77Chlorophyll a-b binding protein 6, chloroplastic n... [more]
R7QUA5_CHOCR3.090e-9565.55Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A5J4ZAY0_PORPP1.450e-6154.49Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
A0A7S0F4D6_9CRYP5.240e-6155.11Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
A0A7S3A203_9RHOD8.960e-6056.21Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
Q9M441_GALSU4.430e-5855.63Light-harvesting protein n=2 Tax=Galdieria sulphur... [more]
A8KCP5_GUITH4.940e-5853.93Light harvesting complex protein 5 n=3 Tax=Guillar... [more]
L1IUF6_GUITC1.480e-5753.18Light-harvesting Chl a protein 10 n=2 Tax=Guillard... [more]
M2VZV1_GALSU4.360e-5754.38Light-harvesting complex protein n=2 Tax=Galdieria... [more]
A0A5J4YN76_PORPP6.750e-5753.80Chlorophyll a-b binding protein 1B-21, chloroplast... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022796Chlorophyll A-B binding proteinPFAMPF00504Chloroa_b-bindcoord: 21..165
e-value: 8.0E-39
score: 133.7
NoneNo IPR availableGENE3D1.10.3460.10Chlorophyll a/b binding protein domaincoord: 12..187
e-value: 1.2E-44
score: 154.6
NoneNo IPR availablePANTHERPTHR21649:SF89CHLOROPHYLL A-B BINDING PROTEIN 6, CHLOROPLASTICcoord: 27..179
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 95..114
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 115..188
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 76..94
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 56..75
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..55
NoneNo IPR availableSUPERFAMILY103511Chlorophyll a-b binding proteincoord: 7..186
IPR001344Chlorophyll A-B binding protein, plant and chromistaPANTHERPTHR21649CHLOROPHYLL A/B BINDING PROTEINcoord: 27..179

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_523_length_23072_cov_4.281145contigNODE_523_length_23072_cov_4.281145:12318..13049 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7450.t1Gcaud7450.t1Gracilaria caudata M_176_S67 malemRNANODE_523_length_23072_cov_4.281145 12318..13049 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud7450.t1 ID=Gcaud7450.t1|Name=Gcaud7450.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=189bp
MSAFIAPVVTGFSAALRGQAPATLDDDSIIGNVGFDPLNLSTVFNMKFMQ
EAEIKHCRVAMLGVLGYIVPELFQFPWGKPLNPIEAHDFFVKTGGMSQIL
LFVSFLEIFGAIALKETLEGDRAPGYFGFDPLGLGKDPEKFKKYHLSEIK
NGRLAMCAFGGLYHATLLTKQGTLDQLTHFQALPGHLY*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022796Chloroa_b-bind
IPR001344Chloro_AB-bd_pln