Gcaud7388.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud7388.t1
Unique NameGcaud7388.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length376
Homology
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BLAST of Gcaud7388.t1 vs. uniprot
Match: A0A2V3J4L5_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J4L5_9FLOR)

HSP 1 Score: 244 bits (622), Expect = 2.810e-74
Identity = 158/382 (41.36%), Postives = 210/382 (54.97%), Query Frame = 0 
Query:    1 MKPPRPSPRVLAVLALALALLRHRKPIQSSLRQLLDAIXXXXXXXXXXXXXXXETSNDLRAYLRPSTTRRVQRGRRAPLSARQVVVPSVPRSVRRVLRLLASEDGLAVIYNIAGGAARGVAREMHRAPSCSHVHADGMQQVIDTLASSSGQRLVNGAVCTAVREGVHTFLQHQREGDAPQADVDWAQKMIDAVLSDRGQAFLLKLTHELTRSVVPILLESGSQTRRDWGEVRQEATSRTSSSQTTPVVKRALSFSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----AVRTYLTTQAELRVYGSKSSGAQQ---VQQSLWKALIRSALVDIKRALLSRGEESAGWVIF 375
            M PP PSPR++A LA+A+ALLRH K I  ++  +L                  +TSND++ YL  ST  R+ R  R P   +QV  PS+PRSVRR+LRLLASED L+V+ ++AGGAARG+AREM R   C  V  +G +QV++ LAS SGQR+VNGAV TAVREG+ TF  H ++   P A+ D A +++DA LS+RGQ  ++KL  ELT++VVPIL+ +                + T+S+Q TP++KR LSFS+                                                                 AVRTYL TQAEL      S+  +    VQQSLWKALI+SA+VD KRALLSRG ++ GW++F
Sbjct:    1 MHPPTPSPRLVATLAIAIALLRHSKSIHDTIHAMLHTARNALNTTRTALQLCAQTSNDMQLYLHSSTPCRISRAGRRP-QVKQVA-PSIPRSVRRLLRLLASEDALSVLNHVAGGAARGLAREMRRCSDCVSVSQNGFEQVVECLASPSGQRVVNGAVATAVREGIQTFC-HMQQPTQPHANKDLATRLMDAALSERGQQLVVKLALELTQAVVPILVHANKA---------PTVGTYTASAQVTPLIKRQLSFSSRPPAEQRSAAEETGSKYVEESPVTRDLVMSVMQAQGRMGVIERLALLAIRDKQLVREVVRTVVSEAVRTYLRTQAELSGGAPSSAHGESQKGVQQSLWKALIQSAIVDAKRALLSRGADATGWLVF 370
The following BLAST results are available for this feature:
BLAST of Gcaud7388.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3J4L5_9FLOR2.810e-7441.36Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 234..252
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 228..278
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 258..275
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 25..375
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 10..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 21..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..9

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1309_length_11517_cov_3.853142contigNODE_1309_length_11517_cov_3.853142:5127..6254 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7388.t1Gcaud7388.t1Gracilaria caudata M_176_S67 malemRNANODE_1309_length_11517_cov_3.853142 5127..6254 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud7388.t1 ID=Gcaud7388.t1|Name=Gcaud7388.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=376bp
MKPPRPSPRVLAVLALALALLRHRKPIQSSLRQLLDAIRRTLNALQLTSN
LFSETSNDLRAYLRPSTTRRVQRGRRAPLSARQVVVPSVPRSVRRVLRLL
ASEDGLAVIYNIAGGAARGVAREMHRAPSCSHVHADGMQQVIDTLASSSG
QRLVNGAVCTAVREGVHTFLQHQREGDAPQADVDWAQKMIDAVLSDRGQA
FLLKLTHELTRSVVPILLESGSQTRRDWGEVRQEATSRTSSSQTTPVVKR
ALSFSNREQAHSERTAQSASKESPVTRHLVRSVMQEQGRMGVIERLALLA
IRDKQLVREVVRTVVAEAVRTYLTTQAELRVYGSKSSGAQQVQQSLWKAL
IRSALVDIKRALLSRGEESAGWVIF*
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