Gcaud7384.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gcaud7384.t1
Unique Name	Gcaud7384.t1
Type	polypeptide
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	284

Homology

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BLAST of Gcaud7384.t1 vs. uniprot
Match: A0A2V3IX68_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IX68_9FLOR)

HSP 1 Score: 163 bits (413), Expect = 9.170e-45
Identity = 98/241 (40.66%), Postives = 146/241 (60.58%), Query Frame = 0

Query:    3 PCVVALISSSLLAVQLFDLLSTLGDYDSFTTMITSAPVQLHVSANSVLAVSSFIVISIFTIVLVSSASPPRRRSPH----CCPFYVTATDDINSFFYF------PNPVKATSKPISHHTAEEVLSPPSIDAAEYHASSLPPLAESFSEVTLTFGTDRPEVYLKMCEQQDMNTICYCPCNHKRADLRKYPHINRLMSSLSPSTPSSQSDSESEFDFDRMSHLGYATLNAGNTPAQSYHAIDM 233
            P   A+   SLL +QL D+L+ + DY S T+M +S P+Q+ ++A S++A++SF ++S+  +++V SA+ PR R  H     CP  VT+ +DI++  +        N +   +   SHH     +SPPS  ++E+  SS   L +SFS VTLTFGTDRPEVYLKM E +DM T+C+C CNH+  +LRK+PH++RL +S+S S  SS  DS  +          +A+ N    P  SYH ID+
Sbjct:    4 PLFFAISGVSLLTLQLLDVLTFIADYVSMTSMWSSTPIQIDITATSIVALASFFLVSL--VLIVFSATIPRSRHRHNQNFTCPITVTSPEDISAMSHVLKRKSSSNTISDVTDVDSHHPHS--ISPPSTYSSEHTTSSSDSLTQSFSAVTLTFGTDRPEVYLKMVEPRDMQTLCHCACNHQTDELRKFPHVSRLTTSISRSGNSSDYDSVHQ-------SFSFASRNLVLEPRPSYHVIDL 233

The following BLAST results are available for this feature:

BLAST of Gcaud7384.t1 vs. uniprot

BLAST of Gcaud7384.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3IX68_9FLOR	9.170e-45	40.66	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 15..18
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 67..283
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..18
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 42..66
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..3
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 4..14
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 19..41
None	No IPR available	TMHMM	TMhelix		coord: 2..24
None	No IPR available	TMHMM	TMhelix		coord: 44..66

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_2173_length_6578_cov_4.575921	contig	NODE_2173_length_6578_cov_4.575921:4946..5985 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7384.t1	Gcaud7384.t1	Gracilaria caudata M_176_S67 male	mRNA	NODE_2173_length_6578_cov_4.575921 4946..5985 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gcaud7384.t1 ID=Gcaud7384.t1|Name=Gcaud7384.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=284bp
MFPCVVALISSSLLAVQLFDLLSTLGDYDSFTTMITSAPVQLHVSANSVL
AVSSFIVISIFTIVLVSSASPPRRRSPHCCPFYVTATDDINSFFYFPNPV
KATSKPISHHTAEEVLSPPSIDAAEYHASSLPPLAESFSEVTLTFGTDRP
EVYLKMCEQQDMNTICYCPCNHKRADLRKYPHINRLMSSLSPSTPSSQSD
SESEFDFDRMSHLGYATLNAGNTPAQSYHAIDMESLPNAPPLEQVVCAPS
VEPNVCHLSLPPLNEVYLQIPITPYPTISQPFR*