Gcaud737.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud737.t1
Unique NameGcaud737.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length103
Homology
The following BLAST results are available for this feature:
BLAST of Gcaud737.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 41..65
e-value: 5.8
score: 15.4
coord: 13..36
e-value: 0.015
score: 24.5
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 43..65
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 41..65
score: 8.704279
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 3..67
e-value: 5.4E-10
score: 41.1
NoneNo IPR availablePFAMPF13909zf-H2C2_5coord: 15..38
e-value: 1.3E-7
score: 31.2
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 12..65

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_661_length_20169_cov_4.503636contigNODE_661_length_20169_cov_4.503636:11839..12634 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud737.t1Gcaud737.t1Gracilaria caudata M_176_S67 malemRNANODE_661_length_20169_cov_4.503636 11839..12634 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud737.t1 ID=Gcaud737.t1|Name=Gcaud737.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=103bp
MHKGGFPGNKGPNACPKCDYTSKERKSLQQHMDKVHKPRPFKCRKPKCKV
EFFNESSRDKHEKIHQMIDNSILSAFPPPYHPVASLQWIPLTPYGDAYVS
HS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR036236Znf_C2H2_sf