Gcaud7361.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud7361.t1
Unique NameGcaud7361.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length738
Homology
[Close]
BLAST of Gcaud7361.t1 vs. uniprot
Match: R7QE20_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QE20_CHOCR)

HSP 1 Score: 153 bits (387), Expect = 3.890e-37
Identity = 94/207 (45.41%), Postives = 126/207 (60.87%), Query Frame = 0 
Query:  540 LSDNPEVPDVSGLNSFADDHFDNFGDDDIEIDHPED-----YSVF-KHTSTS--AHGRGRDGDEEVDL-----STFTREEVAFLLLAHEVVQASLNNSRVCSKYADVAPSPLISAAQAAVMHKLFEPEAIMEQISVIATFGFLQRWLECFPYKPG--ALEAPVRRFAQSSIAHSINLGAVGQRCNSRYAEDLREQTGRSLRLPRHAV 731
            + DNP+VP+V GLN+ A    D +G DD++ +  E+     Y  F KH      A    R  DE+ D      S FT  EVA LLLAH++ +AS  NS + +K  D  P PL++AA AA +  LF+ +AIME  SV+A F  LQRW  CFPY+    +LEAPVR+F Q+ IAH +++G+VGQR  S+ +  LR   GRS+RLPRH V
Sbjct:  174 MGDNPKVPEVPGLNAIATVGDDEYGFDDVDEEDEEENDEALYEQFQKHNDLIEVAEEDQRYFDEQSDHYSFDDSVFTEREVAVLLLAHDIARASKRNSALMAKCPDAPPGPLLTAATAARIEDLFKSDAIMEIASVVAVFHMLQRWTVCFPYRAEGESLEAPVRKFVQTPIAHDLSVGSVGQRSASKSSASLRRGQGRSIRLPRHTV 380
The following BLAST results are available for this feature:
BLAST of Gcaud7361.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
R7QE20_CHOCR3.890e-3745.41Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 479..514
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 479..498
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 390..412
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 499..514
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 385..412
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 438..462
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 172..737
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 151..171
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..150

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_85_length_54060_cov_4.846356contigNODE_85_length_54060_cov_4.846356:7016..9229 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7361.t1Gcaud7361.t1Gracilaria caudata M_176_S67 malemRNANODE_85_length_54060_cov_4.846356 7016..9229 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud7361.t1 ID=Gcaud7361.t1|Name=Gcaud7361.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=738bp
MSSLLSDEQLLRLRANSRTTLRFAKSLQQASEVHSSPRGAPMRQLSRLLL
SAVPLAPAPALYLSHFEPALNAFSSLLALLAGQPLSQPLHNLLLHVAVHP
HVTQHGSAAALSAKDAVALNFVRAVVMCPPRIPIQLRNALKSMYAPEKVN
HIALVASFGAFYATLASLLGLSDEALMPHARGLDGEMRQLLSGANADLAS
VMEPSEMSVPTTITYSRVSSAFSFSNRFSYTSKSHFFQRVAHPLRVKLAR
HAVHHAERTSWLSSIPSTRRTQDDFIGTAMGFVPEYLTAMRSQPHRSVFI
YLIDSILLTDCDCLSIAIKNLACYILARSSENSVLTAHAAFLANRFGALD
IQLSTCMDVPKLQAMQHAYALLDSTQTSPTSSIMTLTDHQERHGQLHDAT
QPEPESIRRSRRADRFRFPEFASGVAFEATSLSREHVACGNHRDDSDDSD
PEQLLDDDSFVQSEPSLLRRGLAKLTRKDSDRRATLKRTLRHPQQQPRYE
EFDTQITSWESGSTSSSSSTTVSADHVAAVTNSSHSLFALSDNPEVPDVS
GLNSFADDHFDNFGDDDIEIDHPEDYSVFKHTSTSAHGRGRDGDEEVDLS
TFTREEVAFLLLAHEVVQASLNNSRVCSKYADVAPSPLISAAQAAVMHKL
FEPEAIMEQISVIATFGFLQRWLECFPYKPGALEAPVRRFAQSSIAHSIN
LGAVGQRCNSRYAEDLREQTGRSLRLPRHAVAPRCES*
back to top