Gcaud7289.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud7289.t1
Unique NameGcaud7289.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length208
Homology
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BLAST of Gcaud7289.t1 vs. uniprot
Match: A0A2V3J6B7_9FLOR (Transmembrane emp24 domain-containing protein 6 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6B7_9FLOR)

HSP 1 Score: 270 bits (691), Expect = 1.440e-89
Identity = 137/192 (71.35%), Postives = 159/192 (82.81%), Query Frame = 0 
Query:   16 SNVPTAESFGIHIPPGGMEHCFFREVHANYHIYIHYVARETINIKLLDTKDAVLYGKRSVLRGSFDFQAINDGSYRICLSVELMRRKPTITKFRFLVVDPTVSSDTVATLEQVHSATKLCDDVKRLSDRVLFRTHLYSDTALETDETLKSSISLTGRLVAVECVAALLAAVSQVSYVRKMLWSSRSRLQRMV 207
            +N P   +FGI IPPGGMEHCFFREVH N H+Y+HYVARETINI + D  + +LY K+SV++GSFDF A  DGSYRICLSVELMRRKPTI KFRFLVVDP+V  D VAT  Q H A  L + VK LSD+VLFRTHLYSDTA ETDETLKSS++L  R+VA+ECVAALLAA+SQVSY+RK+L++SRSR QRMV
Sbjct:   14 TNAPVVRAFGIQIPPGGMEHCFFREVHVNDHVYVHYVARETINISVKDGNERILYQKKSVVQGSFDFAAQEDGSYRICLSVELMRRKPTIAKFRFLVVDPSVLGDKVATSGQAHKANHLSNKVKSLSDQVLFRTHLYSDTAYETDETLKSSVTLAARMVALECVAALLAAISQVSYIRKVLFASRSRRQRMV 205
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BLAST of Gcaud7289.t1 vs. uniprot
Match: R7Q4A8_CHOCR (GOLD domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q4A8_CHOCR)

HSP 1 Score: 172 bits (437), Expect = 4.760e-51
Identity = 92/187 (49.20%), Postives = 126/187 (67.38%), Query Frame = 0 
Query:   21 AESFGIHIPPGGMEHCFFREVHANYHIYIHYVARETINIKLLDTKDAVLYGKRSVLRGSFDFQAINDGSYRICLSVELMRRKPTITKFRFLVVDPTVSSDTVATLEQVHSATKLCDDVKRLSDRVLFRTHLYSDTALETDETLKSSISLTGRLVAVECVAALLAAVSQVSYVRKMLWSSRSRLQRMV 207
            A SFGI +P  G + CF+RE+ +N H+ +HYVARET++I +       +Y K SVL+G   F A  DG Y+ C+S +  RR PTI KFRFL   P V +  +A   Q   A  L  ++ ++SD+VL+  HLY+DT   TDETLKSSI+LTGRL A+ECVA L+ A++QV YVR +L ++RS++QRMV
Sbjct:   18 ALSFGIQVP-AGEKSCFYRELRSNMHVSLHYVARETVSIAVQAPSKEGIYSKTSVLQGEHSFNAKEDGPYQFCVSTDSTRRAPTIAKFRFLAFPPDVFNSDIAKSTQAFDARMLTLELSKISDKVLYSAHLYADTTSATDETLKSSIALTGRLAALECVAVLVVALAQVKYVRNILSATRSKVQRMV 203
The following BLAST results are available for this feature:
BLAST of Gcaud7289.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3J6B7_9FLOR1.440e-8971.35Transmembrane emp24 domain-containing protein 6 n=... [more]
R7Q4A8_CHOCR4.760e-5149.20GOLD domain-containing protein n=1 Tax=Chondrus cr... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009038GOLD domainSMARTSM01190EMP24_GP25L_2coord: 23..197
e-value: 4.7E-4
score: 27.4
IPR009038GOLD domainPFAMPF01105EMP24_GP25Lcoord: 24..196
e-value: 4.9E-10
score: 39.7
IPR009038GOLD domainPROSITEPS50866GOLDcoord: 34..151
score: 9.575807
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 173..192
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..23
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 193..207
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 24..172

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_568_length_21789_cov_4.884183contigNODE_568_length_21789_cov_4.884183:3457..4080 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7289.t1Gcaud7289.t1Gracilaria caudata M_176_S67 malemRNANODE_568_length_21789_cov_4.884183 3457..4080 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud7289.t1 ID=Gcaud7289.t1|Name=Gcaud7289.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=208bp
MRTFTLILLTVAIAFSNVPTAESFGIHIPPGGMEHCFFREVHANYHIYIH
YVARETINIKLLDTKDAVLYGKRSVLRGSFDFQAINDGSYRICLSVELMR
RKPTITKFRFLVVDPTVSSDTVATLEQVHSATKLCDDVKRLSDRVLFRTH
LYSDTALETDETLKSSISLTGRLVAVECVAALLAAVSQVSYVRKMLWSSR
SRLQRMV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009038GOLD_dom