Gcaud7264.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud7264.t1
Unique NameGcaud7264.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length305
Homology
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BLAST of Gcaud7264.t1 vs. uniprot
Match: UPI001C60CBBE (GAG-pre-integrase domain-containing protein n=1 Tax=Pseudomonas sp. MAG002Y TaxID=2678690 RepID=UPI001C60CBBE)

HSP 1 Score: 66.6 bits (161), Expect = 7.860e-9
Identity = 31/68 (45.59%), Postives = 39/68 (57.35%), Query Frame = 0 
Query:  224 DGASDIESTARALAAALRASSSERPGTSNAHHCTFCDRDGHTQDRCYMNPDNPDNHLPQSILDKLSSR 291
            D  SD +ST RALA AL++  +        H C FC R GHT+DRCY NP NPDN LP  + +    +
Sbjct:    2 DSESDTDSTIRALAVALKSVKTGTGVHDKKHQCDFCGRTGHTEDRCYQNPSNPDNKLPPKLREMFQDK 69
The following BLAST results are available for this feature:
BLAST of Gcaud7264.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI001C60CBBE7.860e-945.59GAG-pre-integrase domain-containing protein n=1 Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 73..170
e-value: 1.8E-9
score: 37.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 205..229
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 270..305

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_5624_length_1493_cov_77.169757contigNODE_5624_length_1493_cov_77.169757:28..1014 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7264.t1Gcaud7264.t1Gracilaria caudata M_176_S67 malemRNANODE_5624_length_1493_cov_77.169757 28..1014 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud7264.t1 ID=Gcaud7264.t1|Name=Gcaud7264.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=305bp
MSDTDVESESSTGMKIPRFHGRRGDDYTLWRHRLRAACRIKGVWNVVEAE
SGHSATTEATSETAAESSRVIAKREKACGIIICALGDAPLRVIMDVDDDP
ARMLSLLDARYASNRTVSRIAVQTQLFRMSYTGQNMSSYVDQYTALFSQL
ERMGKDAAIPEAHKAPMLLACIDPHCALESTAAALRILKSSRRTTWPPPS
SMSIMRNSTDPARGSAEVPVDDSDGASDIESTARALAAALRASSSERPGT
SNAHHCTFCDRDGHTQDRCYMNPDNPDNHLPQSILDKLSSRPKRASTARA
RGTAX
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