Gcaud7248.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gcaud7248.t1
Unique Name	Gcaud7248.t1
Type	polypeptide
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	388

Homology

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BLAST of Gcaud7248.t1 vs. uniprot
Match: A0A2V3IYJ0_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IYJ0_9FLOR)

HSP 1 Score: 349 bits (896), Expect = 3.960e-115
Identity = 204/383 (53.26%), Postives = 248/383 (64.75%), Query Frame = 0

Query:   14 VRTSGNT---TGKSGSRRASEKPSRTITKSRKHSHSHHSRXXXXXXXXXXXXXXXXXXXXXXRKRGPKTERHPSSSLGRGPGDPVTIVMLVLLGLSSIVLFVVGVWLLATQDGWPVGLNNTGNRTWTRFISYGTACVVVSLLIIPILIFIXLDSSARRGSQARITRXXXXXXXXXXXXXXXXMSVTGIMFASNRPGFIANIIEDAWTKTVLNNDSVGTACEIEQDFSCRGWRTNSCLNCNPTVNGVYQNCVPLQQLVCPRCFPAAPVQVDSSGQGGTTTVQGVSQGVQGTTNTEGGATPVAVEDSGTDVLVQRDIKR---EHNGFEWTERQ---QTQVSVPGCRNSVLRRYRSFFIPMTVYTLFLLLLLLVLSYKTCVDSSGR 387
            V TSG     T   GS+R+++K   TI+KSRK   +H S                X        R  +T RHPSSSLG GP DPVTI++L++LG+S+IVLF +GVWLLA+Q+GWP+GLNNTGN  WTR ISYGTACVV+SLL IPI+IF+ LD++A+RGSQAR+TR                MSVTG+MFA+NRPGFIA+IIEDAWTKTVL +++V  AC+I+  + CRGW+TNSCLNCNPT NGVY NC   Q+LVCPRC P  P+ V ++ Q    T    +  V   TN   G   +       D LVQR + R     +      RQ   QT   V GCR  VLRRYR FFIPMTVYT+FLLLLLLVLSYK CVDS+GR
Sbjct:   18 VHTSGKNKHLTRPGGSKRSAQK---TISKSRKSKSTHRS--------PAHTSSRSXTAKAPKPSRSRRTARHPSSSLGPGPADPVTIIILIILGISAIVLFALGVWLLASQNGWPLGLNNTGNTNWTRTISYGTACVVLSLLFIPIIIFVVLDAAAKRGSQARVTRLVVLFLCAFCILILLLMSVTGVMFAANRPGFIASIIEDAWTKTVLGSNTVKDACDIQSKYDCRGWKTNSCLNCNPTRNGVYANCQEFQKLVCPRCAPPIPIAVPATTQPQQPTT---TAPVTVPTNPSSGDATIEGVQPNQDQLVQRMLSRMAKRVSSLRNVARQTGTQTIQRVRGCRYYVLRRYRRFFIPMTVYTIFLLLLLLVLSYKGCVDSAGR 386

The following BLAST results are available for this feature:

BLAST of Gcaud7248.t1 vs. uniprot

BLAST of Gcaud7248.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3IYJ0_9FLOR	3.960e-115	53.26	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018499	Tetraspanin/Peripherin	PFAM	PF00335	Tetraspanin	coord: 97..377 e-value: 6.2E-8 score: 32.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 10..27
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 288..310
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..89
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 288..308
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..66
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 379..387
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 358..378
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 139..162
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 163..173
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..94
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 174..201
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 120..138
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 202..357
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 95..119
None	No IPR available	TMHMM	TMhelix		coord: 177..199
None	No IPR available	TMHMM	TMhelix		coord: 139..161
None	No IPR available	TMHMM	TMhelix		coord: 358..377
None	No IPR available	TMHMM	TMhelix		coord: 97..119

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_86_length_54060_cov_4.498935	contig	NODE_86_length_54060_cov_4.498935:20542..21705 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7248.t1	Gcaud7248.t1	Gracilaria caudata M_176_S67 male	mRNA	NODE_86_length_54060_cov_4.498935 20542..21705 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gcaud7248.t1 ID=Gcaud7248.t1|Name=Gcaud7248.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=388bp
MPSRNPPPKTVRPVRTSGNTTGKSGSRRASEKPSRTITKSRKHSHSHHSR
KASSKWASEKSRTKHASEKRTTRKRGPKTERHPSSSLGRGPGDPVTIVML
VLLGLSSIVLFVVGVWLLATQDGWPVGLNNTGNRTWTRFISYGTACVVVS
LLIIPILIFIILDSSARRGSQARITRLVVVFISSLLVIILLLMSVTGIMF
ASNRPGFIANIIEDAWTKTVLNNDSVGTACEIEQDFSCRGWRTNSCLNCN
PTVNGVYQNCVPLQQLVCPRCFPAAPVQVDSSGQGGTTTVQGVSQGVQGT
TNTEGGATPVAVEDSGTDVLVQRDIKREHNGFEWTERQQTQVSVPGCRNS
VLRRYRSFFIPMTVYTLFLLLLLLVLSYKTCVDSSGR*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR018499	Tetraspanin/Peripherin