Gcaud7247.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud7247.t1
Unique NameGcaud7247.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length800
Homology
BLAST of Gcaud7247.t1 vs. uniprot
Match: A0A2V3IYB7_9FLOR (Replication factor C subunit 1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IYB7_9FLOR)

HSP 1 Score: 1086 bits (2808), Expect = 0.000e+0
Identity = 561/706 (79.46%), Postives = 610/706 (86.40%), Query Frame = 0
Query:   10 KKRSSLGFGGPQPTNAEPPKKKARWQPRTDDPPNRGNKPLPVGAPNCLSGKVFVITGVLDSLLREECTDLCKEYGARVVSAVSGKVTHGIVGTDPGASKMSKLDARRIPKIDEDALFAMINGSRPQPPQSPSRPNHQPMNLVEEPVDAKPAVKKDSVSSTKGQPKSSSANSIPSKTGDSTRAKPSA--NSAQLWVDKYKPTSISELVANQKAVKDLSYWLSAWKSRFLYSDGHSKKLKDRSDSEYAAALLVGPPGIGKTTAAHIVCREAGFEPHEFNASDVRNKGGVQVLGETVMVANTMSKYFSISKEKKKKKKTLYPYGQVLIMDEVDGMSSGDRGGSQELIRLIKKSKVPIICIANDDSSSNMRSLANNCFKIRFRKPMVKQVTSRLVHIVRKEGFGVIQDQTLAKLAEGCNGDIRQMINLLQAWRTNSPSLSFGDVKNRLQSEGKTVIQKSIFELARSFFQPGIDGSSNSLIARTDSYFTDADLIPLFIQENYPHTMAATQSLEALADAAESISEGDLCNALVRGQQRWDLMPTGAVLSSLRPGTLLAGGIGAQIMFPSLLGNISRGNKWKRIVQGLEMKVRAAKTSSGSTRSFRLDYIPSLTACFATPLIRSGEAGIDEVTDRLDSYYLQREPDWMDVLECGVYGKGRSPLENIKTPVKTAFTRAYNSSTHARSTVTGCRVGVKTAETVAAAKKSSVPRGG 713
            KKRSS  FGG   T A+P  KK RW PRTDDPPNRGNKPLPVGAPNCLSGKVFVITGVLDSLLREECTDLCKEYGARVVSAVSGKVTH IVGT+PGASKM+K+ A+ IP IDED LF MI  SRPQ P         PM++V++PV A+PA               SS+ +  SK     RAKPSA  +S+ LWVDKYKPT+ SELVANQKAV+DLS WL+ WK +FLY DGHS+KLKDRSD++YAAALLVGPPGIGKTTAAHIVCREAGFEPHEFNASDVRNKGGVQ LGETVMVANTMSKYF IS   K KKK+ YP GQ LIMDEVDGMS GDRGGSQELIR+IKKSKVPIICIANDDSSSNMRSLANNCFKIRFRKPM KQVTSRLV IVRKEGF  IQDQTL KLAEGCNGDIRQMINLLQAWRT SPSLSFGDVK RL+ EGKTVIQKS+FELAR FF PGIDGSSNSLIARTDSYFTDADLIPLFIQENY  TMAA+QSL ALADAAESISEGDLCNALVRGQQRWDLMPTGAVLS+LRPGTL+AGGI  Q+MFPSLLGNIS+GNKWKRIVQGLEMK++A KTS+GSTRSFRLDYIP+LT C ATPLI+SGE GIDEVT+RLD YYL+R+PDW+D+LECGVYGKGRSP+ENI+  VK++FTR+YN+ THARSTVTGCRVGVKTA+T A+AKKS+V  GG
Sbjct:    3 KKRSSGAFGGRDDTAAQPAPKKPRWVPRTDDPPNRGNKPLPVGAPNCLSGKVFVITGVLDSLLREECTDLCKEYGARVVSAVSGKVTHAIVGTEPGASKMAKVKAKSIPSIDEDTLFDMIRASRPQQPH--------PMSVVDQPVQAEPAAXXXXXXXXXXXXVKSSSFATSSK-----RAKPSAATSSSALWVDKYKPTTKSELVANQKAVRDLSAWLAGWKRKFLYGDGHSRKLKDRSDTDYAAALLVGPPGIGKTTAAHIVCREAGFEPHEFNASDVRNKGGVQNLGETVMVANTMSKYFRISG--KSKKKSTYPQGQALIMDEVDGMSGGDRGGSQELIRMIKKSKVPIICIANDDSSSNMRSLANNCFKIRFRKPMTKQVTSRLVDIVRKEGFRAIQDQTLVKLAEGCNGDIRQMINLLQAWRTTSPSLSFGDVKKRLEVEGKTVIQKSVFELARGFFSPGIDGSSNSLIARTDSYFTDADLIPLFIQENYLQTMAASQSLSALADAAESISEGDLCNALVRGQQRWDLMPTGAVLSALRPGTLVAGGISGQLMFPSLLGNISKGNKWKRIVQGLEMKIKAVKTSTGSTRSFRLDYIPALTTCLATPLIQSGEVGIDEVTERLDCYYLERDPDWIDILECGVYGKGRSPMENIRGGVKSSFTRSYNAGTHARSTVTGCRVGVKTADTAASAKKSTVVGGG 693          
BLAST of Gcaud7247.t1 vs. uniprot
Match: R7Q8T7_CHOCR (Replication factor C subunit 1 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q8T7_CHOCR)

HSP 1 Score: 899 bits (2324), Expect = 0.000e+0
Identity = 475/721 (65.88%), Postives = 548/721 (76.01%), Query Frame = 0
Query:   14 SLGFGGP---QPTNAEPPKKKARWQPRTDDPPNRGNKPLPVGAPNCLSGKVFVITGVLDSLLREECTDLCKEYGARVVSAVSGKVTHGIVGTDPGASKMSKLDARRIPKIDEDALFAMINGSRPQPPQSPSRPNHQPMNLVEEPVDAKPAVKKDSVSSTKGQPKSSSANSIPSKTGDST--RAKPSANSAQLWVDKYKPTSISELVANQKAVKDLSYWLSAWKSRFLYSDGHSKKLKDRSDSEYAAALLVGPPGIGKTTAAHIVCREAGFEPHEFNASDVRNKGGVQVLGETVMVANTMSKYFSISKEKKKK-------KKTLYPYGQVLIMDEVDGMSSGDRGGSQELIRLIKKSKVPIICIANDDSSSNMRSLANNCFKIRFRKPMVKQVTSRLVHIVRKEGFGVIQDQTLAKLAEGCNGDIRQMINLLQAWRTNSPSLSFGDVKNRLQSEGKTVIQKSIFELARSFFQPGIDGSSNSLIARTDSYFTDADLIPLFIQENYPHTMAATQSLEALADAAESISEGDLCNALVRGQQRWDLMPTGAVLSSLRPGTLLAGGIGAQIMFPSLLGNISRGNKWKRIVQGLEMKVRAAKTSSGSTRSFRLDYIPSLTACFATPLIRSGEAGIDEVTDRLDSYYLQREPDWMDVLECGVYGKGRSPLENIKTPVKTAFTRAYNSSTHARSTVTGCRVGVKTAETVAAAKKSSVPRGGEDVAVVDDD 722
            S+GFGG    Q   AEP  KK +W PR D PPNRGNK LP+GA NCL+GKVFVITG+LDSLLREEC DLCKEYGARVV +VSGKVTHGIVGTDPG SKM KL A R P I ED LFAMI+ + P   +            V E V+  P  K+ + S+    PK       P K    T  R     +  QLWVDKYKP+S S+LVAN KA++DL  WL +WK +FLY DGH  K K R D +YAA LL GPPGIGKTTAAHIVC+E GFEPHE+NASDVRNKGGV +L ETVMVANTM KYF+I+ +K +K       + T +P GQVLIMDEVDGMS GDRGGSQELI++IK SKVPIICIANDDSS NMRSL+NNCFK+RFR+PMV QVT RL+ I R+EGF  +QDQT+AKLAEGCNGDIRQMINLLQ WRT+S SLSFG VK RL  EGKTVIQKSIFELA+ FF PGIDGS NSL +RTD+YF D+DL+PLFIQENY +T AA  SLE LA AAESISEGDLCN+LVR +QRW+LMP  A++S++RPG+++AGG+  Q  FPS LGN+S+GNKWKRIVQGLEMKV+AA T+S S R+FRLDYIP+LT C ATPLIR G  GIDEV +RLDSY L+R+PDW+++L+ GVY KGRSP+ENI   VKT FTRAYNS  H RSTVTG R+GVK A      KK  V  G  DVAVVD+D
Sbjct:  147 SVGFGGATEVQGAAAEPAAKKRKWVPRQDAPPNRGNKDLPIGARNCLTGKVFVITGILDSLLREECADLCKEYGARVVGSVSGKVTHGIVGTDPGDSKMKKLKANRCPIISEDELFAMISKTLPPSKEKKDVEMEDDEEDVIE-VEKAPVSKRRNASTAARSPK-------PRKEAPPTGGRINGEQHLNQLWVDKYKPSSSSDLVANAKAIRDLRAWLESWKGKFLYGDGHKWKPKARGDMDYAAVLLAGPPGIGKTTAAHIVCKELGFEPHEYNASDVRNKGGVHMLAETVMVANTMFKYFAIAPKKGEKSSKGKSGRSTSFPEGQVLIMDEVDGMSGGDRGGSQELIKVIKTSKVPIICIANDDSSPNMRSLSNNCFKLRFRRPMVNQVTKRLMQIARREGFRQLQDQTVAKLAEGCNGDIRQMINLLQTWRTSSTSLSFGQVKERLVVEGKTVIQKSIFELAKGFFMPGIDGSHNSLFSRTDNYFADSDLMPLFIQENYVNTGAAESSLEKLALAAESISEGDLCNSLVRREQRWELMPAAAIMSAIRPGSIMAGGLRQQPQFPSFLGNMSKGNKWKRIVQGLEMKVKAAPTTSASVRAFRLDYIPALTTCLATPLIRDGAGGIDEVVERLDSYCLERDPDWLEILDAGVYAKGRSPMENIPGSVKTGFTRAYNSREHRRSTVTGMRIGVKQAVDANMTKKR-VDEG--DVAVVDED 856          
BLAST of Gcaud7247.t1 vs. uniprot
Match: A0A1X6P0T4_PORUM (Replication factor C subunit 1 n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P0T4_PORUM)

HSP 1 Score: 576 bits (1484), Expect = 3.180e-190
Identity = 341/738 (46.21%), Postives = 451/738 (61.11%), Query Frame = 0
Query:   27 PPKKKARWQP--RTDDPPNRGNKPLPVGAPNCLSGKVFVITGVLDSLLREECTDLCKEYGARVVSAVSGKVTHGIVGTDPGASKMSKLD----ARRIPK-IDEDALFAMIN---GSRPQPPQSPSRPNHQPMNLVEEPVDAKPAVKKDSVSSTKGQPKSSSANSIPSKTGDSTRAKPSANSAQLWVDKYKPTSISELVANQKAVKDLSYWLSAWKS--------RFLYSDGHSKKLKDRS-DSEYAAALLVGPPGIGKTTAAHIVCREAGFEPHEFNASDVRNKGGVQVLGETVMVANTMSKYFSI------------SKEKKKKKK-----------TLYPYGQVLIMDEVDGMSSGDRGGSQELIRLIKKSKVPIICIANDDSSSNMRSLANNCFKIRFRKPMVKQVTSRLVHIVRKEGFGVIQDQTLAKLAEGCNGDIRQMINLLQAWRTNSPSLSFGDVKNRLQSEGKTVIQKSIFELARSFFQPGIDGSSNSLIARTDSYFTDADLIPLFIQENYPHTMAATQSLEALADAAESISEGDLCNALVRGQQRWDLMPTGAVLSSLRPGTLLAGGIGAQIMFPSLLGNISRGNKWKRIVQGLEMKVRAAKTSSGSTRSFRLDYIPSLTACFATPLIRSGEAGIDEVTDRLDSYYLQREPDWMDVLECGVYGKGRSPLENIKTPVKTAFTRAYNSSTHARSTVTGCRVGVKTAETVAAAKKSSVPRGGEDVAVVDDD 722
            PP KKAR  P   +  PP  G K +PVGAPNCL G VF +TGVL+SL R+   DLCK+YGARVVSA+S  VTH ++G +PGASK+ KLD    A + P  IDED LF ++    G  P+P    + P        ++P DA P V                          + R   SA++ +LWVDKY+P  +S+LVAN K  KDL  WL  WKS        R     G  K+   ++ DSE  AALL GPPGIGKT+ AH++ R  G+EPHE NASD RNK  +      +++++++S +F              +K   +K K             YP GQVLIMDEVDGMS GDRGG QELI++I  ++VPIICI NDD +  MR+LAN+CFK++FR+PMV Q  +RL+ I  +EG+  I  QT  KLAE C+GDIR MINLLQ WR++S +LSF DVK R+++EGKT  ++S FEL RSFF    + S  S+  R D +F DADL+PLF+QENYP + AA      LA AA+SISEGDL N ++R +QRWDLMP   +LS++RPG ++AGG+  +  FPS LG  S   K  R+V+ LEM+ +A    S S+R+FRLDY+P+LT+  ATP++  G AGI      LD+Y+L R+ D   +   G+Y KG +PL+ + + VK   TR YN+S+HA+STV+G   GVK     AAAK + V     +V  V+DD
Sbjct:  172 PPAKKARAGPPWASGAPPRAGEKEVPVGAPNCLKGLVFCLTGVLESLHRDVAADLCKQYGARVVSALSRNVTHALIGEEPGASKLKKLDELKAAGKAPTVIDEDGLFELLRTREGDGPRP--GAAAPXXXXXXXXKKP-DA-PVVX------------------XXXXXXPAPRPVGSADNTELWVDKYRPKEMSDLVANPKIAKDLEAWLLGWKSARAAERLARAARGGGGPKRGAPKAADSEAKAALLAGPPGIGKTSMAHVIARACGYEPHEMNASDTRNKAAIAGSVADIVLSSSISSFFPFKPKADAAAPPPRTKGGSRKGKGRAAAPPAAPVNAYPNGQVLIMDEVDGMSGGDRGGMQELIKVIASTQVPIICICNDDQAQKMRTLANHCFKLKFRRPMVSQTRARLLQIAMREGYRHIDPQTADKLAESCHGDIRAMINLLQTWRSSSETLSFTDVKERMKTEGKTRTEQSPFELYRSFFD---NRSGRSVNDRLDDFFMDADLMPLFVQENYPSSTAAIGRPHLLAAAADSISEGDLLNQMIRSEQRWDLMPASGLLSAVRPGAMVAGGMSGRANFPSWLGKFSTERKNVRLVKELEMRCKAGTRCSQSSRAFRLDYVPALTSAVATPMVSLGAAGIGPAVAVLDAYFLNRD-DVEALSGLGIYAKGTAPLDAVDSKVKATLTRTYNTSSHAQSTVSGAHFGVKG---TAAAKPTPVSATAAEVVDVEDD 880          
BLAST of Gcaud7247.t1 vs. uniprot
Match: A0A7S1XFP5_9RHOD (Replication factor C subunit 1 n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XFP5_9RHOD)

HSP 1 Score: 511 bits (1317), Expect = 3.190e-166
Identity = 317/696 (45.55%), Postives = 417/696 (59.91%), Query Frame = 0
Query:   34 WQPRTDDPPNRGNKPLPVGAPNCLSGKVFVITGVLDSLLREECTDLCKEYGARVVSAVSGKVTHGIVGTDPGASKMSKLDARRIPKIDEDALFAMINGSRP-QPPQSPSRPNHQPMNLVEEPVDAKPAVKKDSVSSTKGQPKSSSANSIPSKTGDSTRAKPSANSAQLWVDKYKPTSISELVANQKAVKDLSYWLSAWKS-RFLYSDGHSKKLKDRS-----DSEYAAALLVGPPGIGKTTAAHIVCREAGFEPHEFNASDVRNKGGV-QVLGETVMVANTMSKYFSISKEKKKKKKTLYPYGQVLIMDEVDGMSSGDRGGSQELIRLIKKSKVPIICIANDDSSSNMRSLANNCFKIRFRKPMVKQVTSRLVHIVRKEGFGVIQDQTLAKLAEGCNGDIRQMINLLQAWRTNSPSLSFGDVKNRLQSEGKTVIQKSIFELARSFFQPGIDGSSNSLIARTDSYFTDADLIPLFIQENYPHTMAATQSLEALADAAESISEGDLCNALVRGQQRWDLMPTGAVLSSLRPGTLLAGGIGAQIMFPSLLGNISRGNKWKRIVQGLEMKVRAAKTSSGSTRSFRLDYIPSLTACFATPLIRSGEAGIDEVTDRLDSYYLQREPDWMDVLECGVYGKGRSPLENIKTPVKTAFTRAYNSSTHA--RSTVTGCRVGVKTAETVAAAKKSSVPRGGEDVAVV 719
            W     +PPN+G KP+P GAP+CLSGK FVI+GVLDSL R+EC DLCK YGA+VVSAVS K +H I+G++ G SK++K     IP IDED LF MI  S P +   S S+ ++  +   +EP          +    KG+       S P   GD           QLWV+KY+P  +SEL  N   + D   WLS WK+ R L       + +  +     D +  AALL GPPGIGKTT A  +CRE GFEPHEFNASD RNK  V  +LGE  +  N   + + +   +  K     P GQVL+MDEVDGMSSGDRGG QELI+LI+ ++VPI+CIANDDSS  +RSL N+C K++FR+P   Q   R++ I + EG   I  QT  ++AEGC GD+RQ +N LQAWR+    +++ +V +R + EGKTV  KSIF+L RSFF    D   +SL  R D +F DADL PLF+QENY      T  L  LA AA+SISEGDL + LVR  QRWDLMP  A+LS L PG++ +G   A+  FP+ LG  S   K  R+V+ L+M  R   + SG+  S RLDYIP+L    ++PLI   + GI++V   LD+YYL RE D+  V +  V      P +     VKTAFTR +NS +H    +TVT  +   + A+T    ++ S+  GG+D+  V
Sbjct:  155 WNQPRSEPPNKGMKPVPTGAPDCLSGKQFVISGVLDSLERDECADLCKRYGAKVVSAVSSKCSHLILGSEAGESKLAKAKQLGIPCIDEDELFKMIRESNPGKNCISTSQKDNPNLESPKEPEXXXXXKLTSARKDVKGE-------SAPRIVGD----------GQLWVEKYRPRKVSELCGNPGLITDFRRWLSGWKTYRDLEQSAEGARKRKAAPTTGEDMKMRAALLTGPPGIGKTTLAITMCRELGFEPHEFNASDTRNKKAVADLLGELTL--NQAMEMYCVVNPQSSKAPLASPEGQVLVMDEVDGMSSGDRGGIQELIKLIRSTRVPIVCIANDDSSQKIRSLQNHCLKLKFRRPTAAQCRKRILDIAQAEGM-TIDPQTAERIAEGCRGDLRQTLNCLQAWRSTGTQVTYQNVVDRFKDEGKTVESKSIFDLFRSFF----DSRGSSLSDRMDDFFMDADLNPLFVQENYIQCRGVTD-LARLARAADSISEGDLASNLVRAHQRWDLMPVQALLSCLVPGSI-SGFFAARPNFPAWLGKNSSTRKNIRLVRELDM--RGKLSLSGNMSSIRLDYIPALQTVTSSPLILREQDGIEDVIATLDAYYLTRE-DFDTVTDLLVQKPPPIPSK-----VKTAFTRQFNSLSHPLNAATVTHGKSASRPADT--GGEEGSLGGGGDDIVDV 814          
BLAST of Gcaud7247.t1 vs. uniprot
Match: M2X3U2_GALSU (Replication factor C subunit 1 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2X3U2_GALSU)

HSP 1 Score: 492 bits (1266), Expect = 7.950e-160
Identity = 289/663 (43.59%), Postives = 399/663 (60.18%), Query Frame = 0
Query:   31 KARWQPRTDDPPNRGNKPLPVGAPNCLSGKVFVITGVLDSLLREECTDLCKEYGARVVSAVSGKVTHGIVGTDPGASKMSKLDARRIPKIDEDALFAMINGSRPQPPQSPSRPNHQPMNLVEEPVDAKPAVKKDSVSSTKGQPKSSSANSIPSKTGDSTRAKPSANSAQLWVDKYKPTSISELVANQKAVKDLSYWLSAWKSRFLYSDGHSKKLKDRSDSEYAAALLVGPPGIGKTTAAHIVCREAGFEPHEFNASDVRNKGGVQVLGETVMVANTMSKYFSISKEKKKKKKTLYPYGQVLIMDEVDGMSSGDRGGSQELIRLIKKSKVPIICIANDDSSSNMRSLANNCFKIRFRKPMVKQVTSRLVHIVRKEGFGVIQDQTLAKLAEGCNGDIRQMINLLQAWRTNSPSLSFGDVKNRLQSEGKTVIQKSIFELARSFFQPGIDGSSNSLIARTDSYFTDADLIPLFIQENYPHTMAATQSLEALADAAESISEGDLCNALVRGQQRWDLMPTGAVLSSLRPGTLLAGGIGAQIMFPSLLGNISRGNKWKRIVQGLEMKVRAAKTSSGSTRSFRLDYIPSLTACFATPLIRSGEAGIDEVTDRLDSYYLQREPDWMDVLECGVYGKGRSPLENIKTPVKTAFTRAYNSSTHARSTVTGCRV 693
            K  W+  T  PPN+G K +P G+P  L G  F ITGVLDSL REECTDL +  G RVVS+ S  V   +VG +PG SKM+K+ + +I  IDED LF +I   R +   +  +   +    +EE    KP +                         D+  A+ SA  ++LW  KY P  +SEL AN  A+K L  WL  WK+  L  +G     K++  S   A LL GPPGIGKTTAA +V +E G+ P EFNASD RN+  V     +V+   T++++         K KT      V+IMDEVDGMS+GDRGG QELI+LIKK+ VPI+CI NDDSS  +RSLAN C K+++R+P+  Q+ SRL+ I +KEGF  +  QTL K+ E C+GD+RQ++NLLQ+WR++S +L++ DV  R++ +GKT  + SIFEL +S F PG       L  R D+YF D DL+PL + ENY  +  A+  L+ L +A+ SI+EGD+ N L+R QQ W+LMP  A+ S + PG LL G  G  I FPS LG  S  +K KR+   +E+++R +   SGS  +F L+Y+P L +  + PL+ S + G+ +V +RLD+YYL ++ DW  ++   +  KG + L+ I T  KTAFTR YNS  H  ST +  RV
Sbjct:   74 KGPWK-HTISPPNKGKKAVPTGSPESLQGLTFCITGVLDSLEREECTDLIRSLGGRVVSSPSKSVNFAVVGLEPGESKMAKIASLKIQVIDEDGLFDLI---RARSTANIWKGQVETKTKLEETKQKKPTI-------------------------DNNIAQ-SATCSELWTYKYAPCDLSELCANPGAIKSLKEWLVNWKAASLSQEGS----KNKGKSSPKAVLLSGPPGIGKTTAALLVSKELGYFPMEFNASDTRNRAIVSSTVGSVINNQTLNQFG--------KDKTT---SSVIIMDEVDGMSAGDRGGIQELIQLIKKTSVPIVCICNDDSSVKVRSLANYCLKLKWRRPLASQLRSRLLEICKKEGFENVDTQTLEKIVESCHGDMRQILNLLQSWRSHSRNLTYSDVLERMKQDGKTYEEMSIFELVKSLFSPG-----EWLSRRLDNYFMDPDLMPLMVAENYIISREASD-LKKLVEASTSIAEGDIFNDLIRRQQAWNLMPVQALFSGIYPGQLLQGPFGDMIHFPSWLGKNSTRSKNKRLT--MELQMRMSNNISGSFHAFLLEYLPCLRSILSAPLVNSKD-GVSDVIERLDAYYLSKD-DWDTLMSLSLEQKGHTELDKIPTATKTAFTREYNSRDHRVSTASAIRV 681          
BLAST of Gcaud7247.t1 vs. uniprot
Match: A0A5J4YWI6_PORPP (Replication factor C subunit 1 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YWI6_PORPP)

HSP 1 Score: 432 bits (1112), Expect = 1.210e-135
Identity = 272/638 (42.63%), Postives = 365/638 (57.21%), Query Frame = 0
Query:   41 PPNRGNKPLPVGAPNCLSGKVFVITGVLDSLLREECTDLCKEYGARVVSAVSGKVTHGIVGTDPGASKMSKLDARRIPK-IDEDALFAMINGSRPQPPQSPSRPNHQPMNLVEEPVDAKPAVKKDSVSSTKGQPKSSSANSIPSKTGDSTRAKPSANSAQLWVDKYKPTSISELVANQKAVKDLSYWLSAWKSRFLYSDGHSKKLKDRSDSEYAAALLV-GPPGIGKTTAAHIVCREAGFEPHEFNASDVRNKGGVQVLGETVMVANTMSKYFSISKEKKKKKKTLYPYGQVLIMDEVDGMSSGDRGGSQELIRLIKKSKVPIICIANDDSSSNMRSLANNCFKIRFRKPMVKQVTSRLVHIVRKEGFGVIQDQTLAKLAEGCNGDIRQMINLLQAWRTNSPSLSFGDVKNRLQSEGKTVIQKSIFELARSFFQPGIDGSSNSLIARTDSYFTDADLIPLFIQENYPHTMAATQSLEALADAAESISEGDLCNALVRGQQRWDLMPTGAVLSSLRPGTLLAGGIGAQIMFPSLLGNISRGNKWKRIVQGLEMKVRAAKTSSGSTRSFRLDYIPSLT-ACFATPLIRSGEAGIDEVTDRLDSYYLQREPDWMDVLECGVYGKGRSPLENIKTPVKTAFT 675
            PP +G   +P GAPNCL+GK FV TGVL S  RE+  DLCK +G RVVSA+SG+VTH ++G D   SK  +   +     IDE+    MI         SPS P           V A P  +  +V+  K +      +   + T  S  +  SA   QLWV+KY+PT +SEL AN    +    ++  W+ RF      +K  K  S+     ALL  GPPG GKTT AHI+C+E G E  EFNAS+VRNK  V      +    ++ K+ + S        T    G V+IMDEVDGMSSGDRGGSQELI+LIK +KVPIICIANDDSS  +R+LA  C K++FR+PM  QV  RL  I  +EGF  IQ  TL KLAE C GD+RQMIN LQ+WR ++ SLSF DVK R++S GK+ I   IF++   +F  G     +S+  R D+YF D DL+PLF+  NY +       ++A   AA+S+SE DL + ++RG+Q W L+P  AV+SS+RP ++  G    +  FP+ LG +S  NK  R+++ L M +   +T +GS R  RL+Y+P L   C      RSG A +D V D L  YYL +  D  D+L   +  +G   L++I+   K   T
Sbjct:  166 PPFKGQTQMPTGAPNCLAGKTFVFTGVLPSFEREDAVDLCKMHGGRVVSAMSGRVTHLVLGADGSESKEKQARTQAATTVIDENEFLRMIR-------DSPSVP-----------VSASPQPRSKTVAVNKSE------HGRVASTRASRGSSASAPGEQLWVEKYRPTRMSELCANPSLAQQAYQFIKTWRERFSSKTVITKGKKLSSNGPKERALLFSGPPGTGKTTLAHILCKELGMEAIEFNASEVRNKAAVHDRVGLLTSNASIGKFVNGS--------TSAANGHVIIMDEVDGMSSGDRGGSQELIQLIKTTKVPIICIANDDSSPKIRTLAGYCLKLKFRRPMASQVRGRLQLIAEQEGFQSIQVTTLDKLAETCQGDLRQMINCLQSWRVSADSLSFTDVKQRMESGGKSNIDMGIFDVYMRYFS-GNPAQQHSIADRVDAYFMDMDLVPLFVHHNYLN--GRDGDMDAFVCAADSLSESDLLSQMIRGEQNWSLLPAHAVMSSVRPTSIYQGF--GRPEFPAFLGKLSSANKNIRLMRELNMHM-TPQTGAGSWRETRLEYVPHLAHRCGHMIRGRSGLAHVDAVVDSLTDYYLSK--DDFDML-FDITLEGNKLLQSIEAGTKKQLT 762          
BLAST of Gcaud7247.t1 vs. uniprot
Match: A0A7S3A9A0_9RHOD (Hypothetical protein (Fragment) n=3 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A9A0_9RHOD)

HSP 1 Score: 398 bits (1022), Expect = 2.150e-125
Identity = 219/493 (44.42%), Postives = 301/493 (61.05%), Query Frame = 0
Query:  196 NSAQLWVDKYKPTSISELVANQKAVKDLSYWLSAWKSRFLYSDGHSKKLKDRSDSEYAAALLVGPPGIGKTTAAHIVCREAGFEPHEFNASDVRNKGGVQVLGETVMVANTMSKYFSISKEKKKKKKTLYPYGQVLIMDEVDGMSSGDRGGSQELIRLIKKSKVPIICIANDDSSSNMRSLANNCFKIRFRKPMVKQVTSRLVHIVRKEGFGVIQDQTLAKLAEGCNGDIRQMINLLQAWRTNSPSLSFGDVKNRLQSEGKTVIQKSIFELARSFFQPGIDGSSNSLIARTDSYFTDADLIPLFIQENYPHTMAATQSLEALADAAESISEGDLCNALVRGQQRWDLMPTGAVLSSLRPGTLLAGGIGAQIMFPSLLGNISRGNKWKRIVQGLEMKVRAAKTSSGSTRSFRLDYIPSLTACFATPLIRSGEAGIDEVTDRLDSYYLQREPDWMDVLECGVYGKGRSPLENIKTPVKTAFTRAYNSSTHARSTV 688
            +S  LWVDKYKP +IS+L AN K   DL  WL  W+S  L+S     KL+   +    A LL GPPG+GKT+ AH  C+EAG E  EFNASD R+K  V  +  ++ V   + +YF +       +K     GQV+IMDEVDGMS+GDRGG QELI +IK ++VPIICIANDD    +RSLAN+C K++FR+PMV QV  RL +I  +EGF  +  + L ++AE C+GDIRQMIN+LQ+W+    S+S  + K  L SEGK   Q+ IF+L + FF+   D     +  R D YF D DL+PL +QENY H  AA + ++ LA A + +S  D+ N  +R   RWDLMPT A+LSS+ PG++LA  +  +  FPS LG +S   K  R+ Q ++M ++    +    +   LDY P L +  + P+IR+G+ G+  V D LD YYL    DW  +L+     +  +P ++I + VK+ FTR Y S  H  STV
Sbjct:  127 SSEALWVDKYKPETISDLCANPKHASDLVKWLKNWRSIHLHSGPRKGKLQPGQEK---AVLLAGPPGVGKTSLAHAACKEAGLEAQEFNASDTRSKKSVASIIGSLAVNEAIGQYFRLGDSPSAPRKD----GQVVIMDEVDGMSAGDRGGVQELISIIKSTRVPIICIANDDGHPKVRSLANHCLKLKFRRPMVSQVRRRLKYICDREGFRNMSPEVLDEVAEACHGDIRQMINMLQSWQARKQSVSQAEAKGYLSSEGKGFQQQPIFDLFKVFFEKNAD-----IYQRLDKYFMDPDLVPLMVQENYVHFSAA-EDIDKLAKATDLMSMADIGNKQLRESSRWDLMPTIALLSSVYPGSILASHLMGRPNFPSWLGKMSSERKSVRLAQEIDMHIKTRVNTDW--KLLLLDYAPCLRSHLSLPMIRNGKEGVQTVIDLLDEYYLSNV-DWETILDLTSVQQRSNPKDSIPSAVKSTFTRTYQSGDHVSSTV 603          
BLAST of Gcaud7247.t1 vs. uniprot
Match: A0A6A7G4U4_9CRUS (Replication factor C subunit 1 (Fragment) n=2 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7G4U4_9CRUS)

HSP 1 Score: 414 bits (1064), Expect = 5.000e-124
Identity = 267/663 (40.27%), Postives = 374/663 (56.41%), Query Frame = 0
Query:   31 KARWQP--RTDDPPNRGNKPLPVGAPNCLSGKVFVITGVLDSLLREECTDLCKEYGARVVSAVSGKVTHGIVGTDPGASKMSKLDARRIPKIDEDALFAMINGSRPQPPQSPSRPNHQPMNLVEEPVDAKPAVKKDSVSSTKGQPKSSSANSIPSKTGDSTRAKPSANSAQLWVDKYKPTSISELVANQKAVKDLSYWLSAWKSRFLYSDGHSKKLKDRSDSEYAAALLVGPPGIGKTTAAHIVCREAGFEPHEFNASDVRNKGGVQVLGETVMVANTMSKYFSISKEKKKKKKTLYPYGQVLIMDEVDGMSSGDRGGSQELIRLIKKSKVPIICIANDDSSSNMRSLANNCFKIRFRKPMVKQVTSRLVHIVRKEGFGVIQDQTLAKLAEGCNGDIRQMINLLQAWRTN--SPSLSFGDVKNRLQSEGKTV---IQKSIFELARSFFQPGIDGSSNSLIARTDSYFTDADLIPLFIQENYPHTMA---ATQSLEALADAAESISEGDLCNALVRGQQRWDLMPTGAVLSSLRPGTLLAGGIGAQIMFPSLLGNISRGNKWKRIVQGLEMKVRAAKTSSGSTRSFRLDYIPSLTACFATPLIRSGEAGIDEVTDRLDSYYLQREPDWMDVLECGVYGKGRSPLENIKTPVKTAFTRAYNSSTH 683
            K +W P  +   P   G   +P GAPNCLSG  FVITGVLDSL RE+  DL KEYG  V SAVSG   + +VG++PG SK++K   +++  IDE  LF +I   + + P   S+              AK   KK  +++ K  P +SS               P      LWV+KY+P   S+L+ N   VK L+++L +W      + G SK+          A L+ GPPGIGKTTA HIV ++  +E  EFNASD R+K  +Q   E  +  ++++ ++    + KKK  +L     V++MDEVDGM +GDRGG  ELI++I K+K+PIICI ND  S  +RSL   C  +RFR+P V+QVT RL+ I R E   +   QT++K+AE    DIRQM+NLLQ W+TN  + ++SF  V  +L S GK     +  ++ +L RS   P        + A  D+YF D  L+PL +QENY HT       ++L+ +A+AAE IS GDL +  +R QQ + LMP  AVLSSL PG L+AGG+G Q+ FPS LG  S   K  R++  L   +  A   SGS  S  +DY+P++      PLI +G+ GI++V + +  Y L RE DW  +   GV    R  ++ I  P+++AFTR YN + H
Sbjct:  705 KRKWYPGMQRAAPSRAGMVEIPKGAPNCLSGLRFVITGVLDSLEREQAADLIKEYGGAVTSAVSGMTAYLVVGSEPGQSKLAKAKDKQVTIIDEAGLFKLIREEKEKKPSKQSKSR------------AKQISKK--IAAVKSHPSASS--------------NPKLTKNMLWVEKYRPFKTSDLIGNDANVKRLAHFLKSWSPN---ARGDSKR----------ACLISGPPGIGKTTAIHIVAKDLNWEILEFNASDTRSKKSLQNQLEYAVGFHSITSFYQPKSQPKKKSISLRT---VIVMDEVDGMGAGDRGGMAELIKIIHKTKIPIICICNDRQSQKVRSLVKYCVDLRFRRPTVQQVTPRLLGIARHENLPM-DLQTISKVAESVQCDIRQMLNLLQLWKTNCNNENMSFSGVSQKLSSSGKDFNIGLWDAVPKLFRSPRTP--KERERFIFAGIDTYFVDLSLVPLMVQENYVHTRMNKPILETLDCIAEAAEFISSGDLIDRGIRSQQNYSLMPIHAVLSSLAPGYLVAGGVG-QLRFPSWLGRRSNRTKNYRLLSELRSHMNLAV--SGSLESCGMDYVPAIRTRVTRPLITAGKDGIEDVIEVMKQYNLSRE-DWDTLTSLGVM---RDQVK-IAAPIRSAFTRRYNQTAH 1312          
BLAST of Gcaud7247.t1 vs. uniprot
Match: A0A7S1TIB9_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TIB9_9RHOD)

HSP 1 Score: 390 bits (1002), Expect = 2.800e-123
Identity = 240/523 (45.89%), Postives = 318/523 (60.80%), Query Frame = 0
Query:  206 KPTSISELVANQKAVKDLSYWLSAWKS-RFLYSDGHSKKLKDRS-----DSEYAAALLVGPPGIGKTTAAHIVCREAGFEPHEFNASDVRNKGGV-QVLGETVMVANTMSKYFSISKEKKKKKKTLYPYGQVLIMDEVDGMSSGDRGGSQELIRLIKKSKVPIICIANDDSSSNMRSLANNCFKIRFRKPMVKQVTSRLVHIVRKEGFGVIQDQTLAKLAEGCNGDIRQMINLLQAWRTNSPSLSFGDVKNRLQSEGKTVIQKSIFELARSFFQPGIDGSSNSLIARTDSYFTDADLIPLFIQENYPHTMAATQSLEALADAAESISEGDLCNALVRGQQRWDLMPTGAVLSSLRPGTLLAGGIGAQIMFPSLLGNISRGNKWKRIVQGLEMKVRAAKTSSGSTRSFRLDYIPSLTACFATPLIRSGEAGIDEVTDRLDSYYLQREPDWMDVLECGVYGKGRSPLENIKTPVKTAFTRAYNSSTHA--RSTVTGCRVGVKTAETVAAAKKSSVPRGGEDVAVV 719
            +P  +SEL  N   + D   WLS WK+ R L       + +  +     D +  AALL GPPGIGKTT A  +CRE GFEPHEFNASD RNK  V  +LGE  +  N   + + +   +  K     P GQVL+MDEVDGMSSGDRGG QELI+LI+ ++VPI+CIANDDSS  +RSL N+C K++FR+P   Q   R++ I + EG   I  QT  ++AEGC GD+RQ +N LQAWR+    +++ +V +R + EGKTV  KSIF+L RSFF    D   +SL  R D +F DADL PLF+QENY      T  L  LA AA+SISEGDL + LVR  QRWDLMP  A+LS L PG++ +G   A+  FP+ LG  S   K  R+V+ L+M  R   + SG+  S RLDYIP+L    ++PLI   + GI++V   LD+YYL RE D+  V +  V      P +     VKTAFTR +NS +H    +TVT  +   + A+T    ++ S+  GG+D+  V
Sbjct:    6 RPRKVSELCGNPGLITDFRRWLSGWKTYRDLEQSAEGARKRKAAPTTGEDMKMRAALLTGPPGIGKTTLAITMCRELGFEPHEFNASDTRNKKAVADLLGELTL--NQAMEMYCVVNPQSSKAPLASPEGQVLVMDEVDGMSSGDRGGIQELIKLIRSTRVPIVCIANDDSSQKIRSLQNHCLKLKFRRPTAAQCRKRILDIAQAEGM-TIDPQTAERIAEGCRGDLRQTLNCLQAWRSTGTQVTYQNVVDRFKDEGKTVESKSIFDLFRSFF----DSRGSSLSDRMDDFFMDADLNPLFVQENYIQCRGVTD-LARLARAADSISEGDLASNLVRAHQRWDLMPVQALLSCLVPGSI-SGFFAARPNFPAWLGKNSSTRKNIRLVRELDM--RGKLSLSGNMSSIRLDYIPALQTVTSSPLILREQDGIEDVIATLDAYYLTRE-DFDTVTDLLVQKPPPIPSK-----VKTAFTRQFNSLSHPLNAATVTHGKSASRPADT--GGEEGSLGGGGDDIVDV 509          
BLAST of Gcaud7247.t1 vs. uniprot
Match: A0A137NYB2_CONC2 (Replication factor C subunit 1 n=1 Tax=Conidiobolus coronatus (strain ATCC 28846 / CBS 209.66 / NRRL 28638) TaxID=796925 RepID=A0A137NYB2_CONC2)

HSP 1 Score: 391 bits (1004), Expect = 8.250e-121
Identity = 245/656 (37.35%), Postives = 358/656 (54.57%), Query Frame = 0
Query:   45 GNKPLPVGAPNCLSGKVFVITGVLDSLLREECTDLCKEYGARVVSAVSGKVTHGIVGTDPGASKMSKLDARRIPKIDEDALFAMI---NGSRPQPPQSPSRPNHQPMNLVEEPV-DAKPAVKKDSVSSTKGQPKSSSANSIPSKTGDSTRAKPSANSAQLWVDKYKPTSISELVANQKAVKDLSYWLSAWKSRFLYSDGHSKKLKDRSDSEYAAALLVGPPGIGKTTAAHIVCREAGFEPHEFNASDVRNKGGVQVLGETVMVANTMSKYFSISKEKKKKKKTLYPYGQVLIMDEVDGMSSGDRGGSQELIRLIKKSKVPIICIANDDSSSNMRSLANNCFKIRFRKPMVKQVTSRLVHIVRKEGFGVIQDQTLAKLAEGCNGDIRQMINLLQAWRTNSPSLSFGDVKNRLQSEGKTVIQKSIFELARSFFQPGIDGSSNSLIARTDSYFTDADLIPLFIQENY----PHTMAATQS--------LEALADAAESISEGDLCNALVRGQQRWDLMPTGAVLSSLRPGTLLAGGIGAQIMFPSLLGNISRGNKWKRIVQGLEMKVRAAKTSSGSTRSFRLDYIPSLTACFATPLIRSGEAGIDEVTDRLDSYYLQREPDWMDVLECGVYGKGRSPL-ENIKTPVKTAFTRAYNSSTH 683
            G+K +P G P CL GK FV+TG+  S+ RE+  DL K +G RV SAVSGK +  +VG +PG +K+ K    R P+IDED LF MI   NG+      +              P  + KP VK +     + +P  + A +      DS ++KP++  +++WVDKYKP SISE+V N   V+D+  +L  +     YS   ++           A L+ GPPGIGKTTAAH+ C+E G++  EFNASDVRNK  +Q    T    ++++ +F +  +K + K+        LI+DE+DGMS GDRGG QE+I++IK +KVPIICIAND  ++ +RSLAN C  ++F +P    +  R+ HI  KE    +    + KL      DIRQ+INLL  W+ +  SLS+ D  N    E +       F++ + +F   +  +SN++  R D YF D  +IPL +QENY    P   +++++        LE L+ AA+SISE D+ +  +  QQ W LMP  ++ S + P   + GG+   I F   LG  S   K KRI+Q L   ++    +SG        Y+P+L      PL  +   GI EV + +D YYL +E DW ++++ G   K  S L + I + VK+AFTR YN   H
Sbjct:   62 GSKEVPTGPPECLLGKTFVVTGIPPSITREDMEDLIKRHGGRVTSAVSGKTSFLVVGNEPGQTKVDKAKKMRTPQIDEDGLFDMIRSANGANGSSEAASXXXXXXXXXXXXXPKKEVKPVVKSEPSVKLEDKPVITPARNYSWMQPDS-KSKPASKVSEMWVDKYKPESISEIVGNNTHVQDIIRFLRDFDPNQPYSSSTTR-----------AVLITGPPGIGKTTAAHLACKETGYDALEFNASDVRNKAAIQQKIGTASSNHSITSFFGVGNKKPETKRL------ALILDEIDGMSGGDRGGVQEVIKMIKTTKVPIICIANDRMNTKVRSLANYCKDLKFSRPTSASIKKRIEHIAAKENL-TLSVNVIDKLVGSTQNDIRQIINLLSTWKLSYDSLSY-DQANAFSKESQKNQTMGPFDVTQRYFNGSLY-ASNTIQDRFDYYFNDFSIIPLMVQENYINSNPRRASSSETPAQQQLKHLELLSLAADSISEADIIDRTIYTQQNWSLMPVHSLYSCVAPSYYMHGGMNGMINFAGWLGKNSTATKNKRILQELHSHMKLK--TSGDRDQLCQQYLPTLLPMLVKPLADNQADGIPEVIELMDEYYLTKE-DWDNMIDFGSSDKLTSSLFKQIPSNVKSAFTRTYNKMEH 693          
The following BLAST results are available for this feature:
BLAST of Gcaud7247.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IYB7_9FLOR0.000e+079.46Replication factor C subunit 1 n=1 Tax=Gracilariop... [more]
R7Q8T7_CHOCR0.000e+065.88Replication factor C subunit 1 n=1 Tax=Chondrus cr... [more]
A0A1X6P0T4_PORUM3.180e-19046.21Replication factor C subunit 1 n=1 Tax=Porphyra um... [more]
A0A7S1XFP5_9RHOD3.190e-16645.55Replication factor C subunit 1 n=1 Tax=Compsopogon... [more]
M2X3U2_GALSU7.950e-16043.59Replication factor C subunit 1 n=1 Tax=Galdieria s... [more]
A0A5J4YWI6_PORPP1.210e-13542.63Replication factor C subunit 1 n=1 Tax=Porphyridiu... [more]
A0A7S3A9A0_9RHOD2.150e-12544.42Hypothetical protein (Fragment) n=3 Tax=Rhodosorus... [more]
A0A6A7G4U4_9CRUS5.000e-12440.27Replication factor C subunit 1 (Fragment) n=2 Tax=... [more]
A0A7S1TIB9_9RHOD2.800e-12345.89Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A137NYB2_CONC28.250e-12137.35Replication factor C subunit 1 n=1 Tax=Conidiobolu... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001357BRCT domainSMARTSM00292BRCT_7coord: 54..132
e-value: 2.7E-8
score: 43.5
IPR001357BRCT domainPFAMPF00533BRCTcoord: 54..129
e-value: 6.1E-10
score: 39.3
IPR001357BRCT domainPROSITEPS50172BRCTcoord: 52..133
score: 9.583899
IPR003593AAA+ ATPase domainSMARTSM00382AAA_5coord: 251..394
e-value: 7.5E-8
score: 42.1
IPR036420BRCT domain superfamilyGENE3D3.40.50.10190BRCT domaincoord: 29..131
e-value: 2.1E-24
score: 87.5
IPR036420BRCT domain superfamilySUPERFAMILY52113BRCT domaincoord: 54..137
IPR013725DNA replication factor RFC1, C-terminalPFAMPF08519RFC1coord: 524..680
e-value: 1.1E-38
score: 132.9
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 198..387
e-value: 2.4E-49
score: 169.8
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 199..452
NoneNo IPR availableGENE3D1.10.8.60coord: 388..459
e-value: 2.2E-16
score: 61.2
NoneNo IPR availableGENE3D1.20.272.10coord: 463..568
e-value: 3.6E-25
score: 89.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 728..799
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 125..195
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..51
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 165..195
NoneNo IPR availablePANTHERPTHR23389:SF6REPLICATION FACTOR C SUBUNIT 1coord: 29..770
NoneNo IPR availablePANTHERPTHR23389CHROMOSOME TRANSMISSION FIDELITY FACTOR 18coord: 29..770
NoneNo IPR availableCDDcd00009AAAcoord: 256..388
e-value: 3.82547E-13
score: 65.6303
NoneNo IPR availableCDDcd18140HLD_clamp_RFCcoord: 388..449
e-value: 3.21253E-12
score: 60.2353
IPR003959ATPase, AAA-type, corePFAMPF00004AAAcoord: 256..386
e-value: 3.5E-13
score: 50.1
IPR012178Replication factor C subunit 1PIRSFPIRSF036578RFC1coord: 3..778
e-value: 1.3E-203
score: 676.5
IPR008921DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminalSUPERFAMILY48019post-AAA+ oligomerization domain-likecoord: 462..593

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_86_length_54060_cov_4.498935contigNODE_86_length_54060_cov_4.498935:17505..19904 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7247.t1Gcaud7247.t1Gracilaria caudata M_176_S67 malemRNANODE_86_length_54060_cov_4.498935 17505..19904 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud7247.t1 ID=Gcaud7247.t1|Name=Gcaud7247.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=800bp
MPRKPATQSKKRSSLGFGGPQPTNAEPPKKKARWQPRTDDPPNRGNKPLP
VGAPNCLSGKVFVITGVLDSLLREECTDLCKEYGARVVSAVSGKVTHGIV
GTDPGASKMSKLDARRIPKIDEDALFAMINGSRPQPPQSPSRPNHQPMNL
VEEPVDAKPAVKKDSVSSTKGQPKSSSANSIPSKTGDSTRAKPSANSAQL
WVDKYKPTSISELVANQKAVKDLSYWLSAWKSRFLYSDGHSKKLKDRSDS
EYAAALLVGPPGIGKTTAAHIVCREAGFEPHEFNASDVRNKGGVQVLGET
VMVANTMSKYFSISKEKKKKKKTLYPYGQVLIMDEVDGMSSGDRGGSQEL
IRLIKKSKVPIICIANDDSSSNMRSLANNCFKIRFRKPMVKQVTSRLVHI
VRKEGFGVIQDQTLAKLAEGCNGDIRQMINLLQAWRTNSPSLSFGDVKNR
LQSEGKTVIQKSIFELARSFFQPGIDGSSNSLIARTDSYFTDADLIPLFI
QENYPHTMAATQSLEALADAAESISEGDLCNALVRGQQRWDLMPTGAVLS
SLRPGTLLAGGIGAQIMFPSLLGNISRGNKWKRIVQGLEMKVRAAKTSSG
STRSFRLDYIPSLTACFATPLIRSGEAGIDEVTDRLDSYYLQREPDWMDV
LECGVYGKGRSPLENIKTPVKTAFTRAYNSSTHARSTVTGCRVGVKTAET
VAAAKKSSVPRGGEDVAVVDDDLSLEVEEDVEEDSDDDDYVQDFSKKQSR
KTRKGAKAKTAAKTSSSKGARGGRGRGKTAGSSRTTKGTAKGKARGRRK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001357BRCT_dom
IPR003593AAA+_ATPase
IPR036420BRCT_dom_sf
IPR013725DNA_replication_fac_RFC1_C
IPR027417P-loop_NTPase
IPR003959ATPase_AAA_core
IPR012178RFC1
IPR008921DNA_pol3_clamp-load_cplx_C