Gcaud7214.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gcaud7214.t1
Unique Name	Gcaud7214.t1
Type	polypeptide
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	403

Homology

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BLAST of Gcaud7214.t1 vs. uniprot
Match: A0A2V3IN36_9FLOR (Plant intracellular Ras-group-related LRR protein 7 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IN36_9FLOR)

HSP 1 Score: 394 bits (1011), Expect = 3.070e-132
Identity = 317/402 (78.86%), Postives = 360/402 (89.55%), Query Frame = 0

Query:    1 MGSSASKSATKNTSAADTSHNSNSDVSGVAPADDAVPDPALLDAEPEVARQPSAETPAHSSSNVEVPGKKKVEDIKFHNPFEDDTNQTGLSIYEMRIQESFYSTPERPRSKAYTAAKEAAXXXXXXXXXXXXXXXXXKSSTNVEIEEELVPHTVNWAIHNTKKLGVLNMSRMDLTSIPDLIFESMPGTLRIINISFNRFEALDPRLCDYVLVQRLIANGNFLSSLPTVICXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGTLDLTTLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEYMSLRNLSALTLDANRITDFPNAILQLCKELVTLRLHANPIKMNVLEAKPAYSEFAERRRVKFKRQIETGSMTIEDLNPADTN 402
            MG+SASK      +AA+T+ NSNSD S VAPADD++ DP   +++ E   QP    P  ++S VE+PGKK+VED+KFHNP +D TNQTGLS+YEMRIQ+SFYSTP RP+SKAYTAAKEAAXXXXXXXXXXXXXXXXXKS++ +  EE+LVPHTV+WAIHNTKKLGVLN+S+MDLT IPDL+F+SMPGTLRIINISFNRFE+LDPRLCDYVLVQRLIANGNFLSSLP+V  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  +LDLT+LXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEYM+LR+L A TLD+NRI+DFP AILQ+C +L+TLRL ANPIKMNVLE KPAY+EFAERRR+KFKRQIE GS++IEDLNPAD+N
Sbjct:    1 MGASASK------TAANTARNSNSDASAVAPADDSLQDPPQCESD-EHQPQP----PPPTASLVELPGKKQVEDLKFHNPVDDGTNQTGLSVYEMRIQDSFYSTPARPKSKAYTAAKEAAXXXXXXXXXXXXXXXXXKSASKMPEEEQLVPHTVDWAIHNTKKLGVLNLSKMDLTVIPDLVFDSMPGTLRIINISFNRFESLDPRLCDYVLVQRLIANGNFLSSLPSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASLDLTSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEYMALRSLIAFTLDSNRISDFPEAILQVCTDLITLRLRANPIKMNVLEVKPAYAEFAERRRIKFKRQIEAGSVSIEDLNPADSN 391

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BLAST of Gcaud7214.t1 vs. uniprot
Match: R7QK78_CHOCR (Leucine-rich repeat-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QK78_CHOCR)

HSP 1 Score: 189 bits (479), Expect = 2.210e-53
Identity = 178/308 (57.79%), Postives = 202/308 (65.58%), Query Frame = 0

Query:   95 MRIQESFYSTPERPRSKAYTAAKEAAXXXXXXXXXXXXXXXXXKSSTNVEIEE--ELVPHTVNWAIHNTKKLGVLNMSRMDLTSIPDLIFESMPGTLRIINISFNRFEALDPRLCDYVLVQRLIANGNFLSSLPTVICXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGTLDLTTLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEYMSLRNLSALTLDANRITDFPNAILQLCKELVTLRLHANPIKMNVLEAKPAYSEFAERRRVKFKRQIETGSMTIEDLNPAD 400
            MRIQ+SF+S P R RSKAYTAAKEA     XXXXXXXXXXXXX      +  +  ELVP+TV WAI NTKKLG+LN+S+M L S+PD +FES+PGT RI+NISFNR   LD RLCDYVLVQRLIANGN LSS+P  I            XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   L LT L                     XXXXXXXXXXXXX                     FPN ILQ+C ELVTLRL  NP++M  LE K +Y +FAERRR K +RQ++ G++T  DL P +
Sbjct:    1 MRIQDSFFSAPNRNRSKAYTAAKEAENAKKXXXXXXXXXXXXXXXXXXXKGTDTPELVPNTVPWAIENTKKLGILNLSKMQLESVPDEVFESLPGTARILNISFNRITELDTRLCDYVLVQRLIANGNLLSSIPQNIVRMTALKKLDLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAELQLTALSLGRNAFTTAPLQVTSMEWLMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFPNVILQMCVELVTLRLTDNPMRMAALEGKASYVDFAERRRTKLRRQLDAGTITEADLLPCN 308

The following BLAST results are available for this feature:

BLAST of Gcaud7214.t1 vs. uniprot

BLAST of Gcaud7214.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A2V3IN36_9FLOR	3.070e-132	78.86	Plant intracellular Ras-group-related LRR protein ...	[more]
R7QK78_CHOCR	2.210e-53	57.79	Leucine-rich repeat-containing protein n=1 Tax=Cho...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 116..138
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 66..81
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..83
None	No IPR available	PANTHER	PTHR16083	LEUCINE RICH REPEAT CONTAINING PROTEIN	coord: 222..369
None	No IPR available	PANTHER	PTHR16083:SF27	LEUCINE-RICH REPEAT PROTEIN SOC-2 HOMOLOG-LIKE PROTEIN	coord: 158..278 coord: 222..369
None	No IPR available	PANTHER	PTHR16083	LEUCINE RICH REPEAT CONTAINING PROTEIN	coord: 158..278
None	No IPR available	SUPERFAMILY	52058	L domain-like	coord: 156..362
IPR003591	Leucine-rich repeat, typical subtype	SMART	SM00369	LRR_typ_2	coord: 323..346 e-value: 3.3 score: 16.7 coord: 232..254 e-value: 0.0033 score: 26.6 coord: 255..278 e-value: 16.0 score: 11.5 coord: 300..322 e-value: 140.0 score: 3.9
IPR001611	Leucine-rich repeat	PFAM	PF13855	LRR_8	coord: 215..268 e-value: 9.4E-9 score: 34.9
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10	Ribonuclease Inhibitor	coord: 137..249 e-value: 1.8E-17 score: 65.0
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10	Ribonuclease Inhibitor	coord: 250..391 e-value: 4.2E-24 score: 87.0

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_2234_length_6365_cov_4.130379	contig	NODE_2234_length_6365_cov_4.130379:22..1230 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7214.t1	Gcaud7214.t1	Gracilaria caudata M_176_S67 male	mRNA	NODE_2234_length_6365_cov_4.130379 22..1230 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gcaud7214.t1 ID=Gcaud7214.t1|Name=Gcaud7214.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=403bp
MGSSASKSATKNTSAADTSHNSNSDVSGVAPADDAVPDPALLDAEPEVAR
QPSAETPAHSSSNVEVPGKKKVEDIKFHNPFEDDTNQTGLSIYEMRIQES
FYSTPERPRSKAYTAAKEAAAAKKAARAERKAQRARKKSSTNVEIEEELV
PHTVNWAIHNTKKLGVLNMSRMDLTSIPDLIFESMPGTLRIINISFNRFE
ALDPRLCDYVLVQRLIANGNFLSSLPTVICRMTALKKLDLARNKLTSLPD
AFAGMRYLEHVDLSDNLLNELPPSFGTLDLTTLNLSRNKFTIAPLEITSM
EMLLDLDMSDNQLMAVPDEYMSLRNLSALTLDANRITDFPNAILQLCKEL
VTLRLHANPIKMNVLEAKPAYSEFAERRRVKFKRQIETGSMTIEDLNPAD
TN*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR003591	Leu-rich_rpt_typical-subtyp
IPR001611	Leu-rich_rpt
IPR032675	LRR_dom_sf