Gcaud7120.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud7120.t1
Unique NameGcaud7120.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length242
Homology
BLAST of Gcaud7120.t1 vs. uniprot
Match: A0A2V3IJ52_9FLOR (Tyrosine--tRNA ligase, cytoplasmic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IJ52_9FLOR)

HSP 1 Score: 255 bits (652), Expect = 1.130e-82
Identity = 137/241 (56.85%), Postives = 170/241 (70.54%), Query Frame = 0
Query:    1 MDVLKPALETLDTIISNIETALKAGSDINKKDQEASTTAPDSKENIPSVKEKXXXXXXXXXXXXXXXLPIETTQFLQCDLRVGKITEVGPHPESEKLYVLQISYGNDETKTVCAGMREFLSEEEMQNRLVVTICNLKPRKLRGIASEAMVLAGSCRSDGGEKETVVPLSPPEGVSEGSIVGVQDMDGERTVTAGKYVSSKTWDKVVPRLQVINGLALYNDKPLVVGDGKVQCEIADGAEIH 241
            M+ LKPA   LD IISNIE AL A     K D  +S    ++K++       XXXX           +P+ET QFLQCDLRV ++T V  HPE++ L+VLQ++Y ND  KTVCAG+R +LS+++M NR+VVTICNLKPRKLRGIASEAMVLAGS RS  G+K+TVVP++PPEG + GS+V V+ MDGERTV  GK+VS KTWDK+VPRL V NG A Y+   LVV    V C++ DGAEIH
Sbjct:    1 MEALKPAFNALDAIISNIEAALNASP--TKPDHNSSGQPHNAKQSXXXXXXXXXXXAPVPN------VPVETAQFLQCDLRVAQVTSVTHHPEADGLFVLQLTYANDVNKTVCAGLRHYLSDDDMLNRMVVTICNLKPRKLRGIASEAMVLAGSIRSSEGDKQTVVPIAPPEGAAPGSVVSVRGMDGERTVEDGKFVSGKTWDKIVPRLGVTNGNACYDGNELVVDGASVTCDLPDGAEIH 233          
BLAST of Gcaud7120.t1 vs. uniprot
Match: R7QM31_CHOCR (tRNA-binding domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QM31_CHOCR)

HSP 1 Score: 211 bits (537), Expect = 2.940e-65
Identity = 100/169 (59.17%), Postives = 129/169 (76.33%), Query Frame = 0
Query:   73 TQFLQCDLRVGKITEVGPHPESEKLYVLQISYGNDETKTVCAGMREFLSEEEMQNRLVVTICNLKPRKLRGIASEAMVLAGSCRSDGGEKETVVPLSPPEGVSEGSIVGVQDMDGERTVTAGKYVSSKTWDKVVPRLQVINGLALYNDKPLVVGDGKVQCEIADGAEIH 241
            +QFLQCDLRVG++TEV  HP+SE LYVL++ Y ++E +T+CAG+R ++ EEE+++R+VVTICNLKPR LRGI SE MVLAGS +SD G KE VV L+ P    +GSIV  + +D ERTV  GK+VS KTWDK+VPRL V +G A Y+ KPL    G + C++ DGAEIH
Sbjct:   64 SQFLQCDLRVGRVTEVSYHPQSELLYVLKVRYSDEELRTICAGLRNYIPEEELKDRMVVTICNLKPRPLRGILSEGMVLAGSVKSDDGVKEEVVILAAPAAAEDGSIVIAEGIDEERTVKDGKFVSGKTWDKIVPRLSVKDGTACYDSKPLRTAAGVITCQLPDGAEIH 232          
BLAST of Gcaud7120.t1 vs. uniprot
Match: UPI001CFF0147 (uncharacterized protein n=1 Tax=Naegleria lovaniensis TaxID=51637 RepID=UPI001CFF0147)

HSP 1 Score: 124 bits (310), Expect = 7.200e-31
Identity = 76/184 (41.30%), Postives = 106/184 (57.61%), Query Frame = 0
Query:   70 IETTQFLQCDLRVGKITEVGPHPESEKLYVLQISYGNDETKTVCAGMREFLSEEEMQNRLVVTICNLKPRKLRGIASEAMVLAGSCRSDGGEKETVVPLSPPEGVSEGS-IVGVQDMDGERTVTAGKYVSS-------KTWDKVVPRLQVINGLALYNDKPLVVGDG----KVQCEIADGAEIH 241
            I ++ F Q  + V +I  V  HPESEKLY + +S G  + K + AG+R+F SE+++ +R V+ I NLKP+KL G+ SEAMVLAGS  S  G+ ETV  L P +    G  ++  +D D E+      YVSS         W+K+V  L V+NG   Y  + L V       KV+CE+ DG+EIH
Sbjct:   78 IPSSPFHQTYIVVARIEAVEKHPESEKLYKMTLSVGQGQHKNLVAGLRKFYSEDQLLHRKVLAILNLKPKKLAGVLSEAMVLAGSTGS--GDNETVKVLEPADEAQVGDRVILEKDFDSEQQQWKSAYVSSPEDRCSPNQWEKMVKELSVLNGQPSYAKQILCVAGQQQTIKVKCELPDGSEIH 259          
BLAST of Gcaud7120.t1 vs. uniprot
Match: A0A150H261_GONPE (tRNA-binding domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150H261_GONPE)

HSP 1 Score: 119 bits (299), Expect = 2.570e-29
Identity = 73/173 (42.20%), Postives = 101/173 (58.38%), Query Frame = 0
Query:   71 ETTQFLQCDLRVGKITEVGPHPESEKLYVLQISYGNDETKTVCAGMREFLSEEEMQNRLVVTICNLKPRKLRGIASEAMVLAGSCRSDGGEKETVVPLSPPEGVSEGSIVGVQDMDGERTVTAGKYVSSKTWDKVVPRLQVINGLALYNDKPLVV--GDGKVQCEIADGAEIH 241
            E   F +  ++VG+I  V   P SEKL+ L++  G  ET+ VCAG+R+FLS E ++  LV  + NLKP KL G ASEAMVLA      GG+ + V  L PPEG + G ++ +    G  + +  K + S  W K+V  L+V  G A +N + LV   GD K+  EI DG+EIH
Sbjct:   84 EEALFARALIKVGRILSVEELPNSEKLFKLKVDLGAGETRQVCAGLRQFLSAEALREALVCVVANLKPAKLAGEASEAMVLAAEAEV-GGQLQ-VRTLIPPEGAAPGDVLYLSG--GTPSASPDKVLKSDHWKKIVGGLKVAAGGAAFNGRQLVTSSGDVKLPAEIPDGSEIH 252          
BLAST of Gcaud7120.t1 vs. uniprot
Match: A0A7S1MIW1_NEODS (Hypothetical protein n=1 Tax=Neobodo designis TaxID=312471 RepID=A0A7S1MIW1_NEODS)

HSP 1 Score: 117 bits (294), Expect = 6.150e-29
Identity = 68/166 (40.96%), Postives = 93/166 (56.02%), Query Frame = 0
Query:   73 TQFLQCDLRVGKITEVGPHPESEKLYVLQISYGNDETKTVCAGMREFLSEEEMQNRLVVTICNLKPRKLRGIASEAMVLAGSCRSDGGEKETVVPLSPPEGVSEGSIVGVQDMDGERTVTAGKYVSSKTWDKVVPRLQV-INGLALYNDKPLVVGDGKVQCEIADG 237
            T   +   RVG++ EV PHP+S+KLYV QI  G  E +T+ +G+R+F++EEE  N+LVV   NL+PRK+RGI S  MV+  S    G  K     L  PEGV  G  +     DGE      K ++ K +D+V P L+   +G+A Y D P V   G V   I +G
Sbjct:   55 TSMARVAFRVGRVLEVKPHPDSDKLYVEQIDLGEPEPRTIISGLRDFVTEEEFTNKLVVVAANLEPRKMRGIPSAGMVMCASTEGKGDVKI----LDVPEGVPPGERITFPGHDGEAEPVLKKKLA-KHYDEVAPHLRTNADGVACYGDLPFVTSKGPVTSVIKNG 215          
BLAST of Gcaud7120.t1 vs. uniprot
Match: A9S3L0_PHYPA (Predicted protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9S3L0_PHYPA)

HSP 1 Score: 116 bits (290), Expect = 7.830e-28
Identity = 67/163 (41.10%), Postives = 96/163 (58.90%), Query Frame = 0
Query:   80 LRVGKITEVGPHPESEKLYVLQISYGNDETKTVCAGMREFLSEEEMQNRLVVTICNLKPRKLRGIASEAMVLAGSCRSDGGEKETVVPLSPPEGVSEGSIVGVQDMDGERTVTAGKYVSSKTWDKVVPRLQVINGLALYNDKPLVVGDGKVQCE-IADGAEIH 241
            ++V  +  V  HP SEKLYV ++  G    K V AG+++F+++EE++ + V TI NLK  KL G  SEAM+LAGS  ++ G  E V  L PP   + G  +  +   G  +    K +SSK W+KVVP LQV  GLA+++ K LV   G ++   + DGA IH
Sbjct:  109 MQVSLVQSVENHPNSEKLYVCKVDVGCGNIKQVVAGLKKFVTKEELEGKKVCTILNLKTAKLAGQVSEAMILAGSVATEDGS-EIVKVLEPPSEAAPGDRIFQEG--GVPSANPAKQLSSKIWEKVVPLLQVKGGLAVFDSKSLVTSSGPIKVPGLPDGAGIH 268          
BLAST of Gcaud7120.t1 vs. uniprot
Match: R4WDR5_RIPPE (Tyrosine--tRNA ligase n=1 Tax=Riptortus pedestris TaxID=329032 RepID=R4WDR5_RIPPE)

HSP 1 Score: 120 bits (300), Expect = 1.190e-27
Identity = 67/164 (40.85%), Postives = 94/164 (57.32%), Query Frame = 0
Query:   79 DLRVGKITEVGPHPESEKLYVLQISYGNDETKTVCAGMREFLSEEEMQNRLVVTICNLKPRKLRGIASEAMVLAGSCRSDGGEKETVVPLSPPEGVSEGSIVGVQDMD-GERTVTAGKYVSSKTWDKVVPRLQVINGL-ALYNDKPLVVGDGKVQCEIADGAEI 240
            D+RVGKI EV  HP++E LYV +I  G  E +T+ +G+ +++ E EM NR VV +CNLKP K+RGI S  MVL  SC  + G+K  V PL PPEG   G  V V++ + G   V        K W+K+   L+  +   A++   PL+   GK+ C+   G  I
Sbjct:  372 DMRVGKIIEVSRHPDAEALYVEKIDLGEAEPRTIVSGLVQYVPENEMLNRFVVVLCNLKPAKMRGIESSGMVLCASCEDEQGKK--VEPLDPPEGSQPGDRVNVENYETGNPDVVLNP--KKKIWEKLQVDLKTSSTCEAVWQGNPLLTSKGKITCKTLKGVPI 531          
BLAST of Gcaud7120.t1 vs. uniprot
Match: A0A250X343_9CHLO (tRNA-binding domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250X343_9CHLO)

HSP 1 Score: 114 bits (285), Expect = 2.250e-27
Identity = 81/241 (33.61%), Postives = 124/241 (51.45%), Query Frame = 0
Query:    7 ALETLDTIISNIETALKAGSDINKKDQEASTT--APDSKENIPSVKEKXXXXXXXXXXXXXXX--LPIETTQFLQCDLRVGKITEVGPHPESEKLYVLQISYGNDETKTVCAGMREFLSEEEMQNRLVVTICNLKPRKLRGIASEAMVLAGSCRSDGGEKETVVPLSPPEGVSEGSIVGVQDMDGERTVTAGKYVSSKTWDKVVPRLQVINGLALYNDKPLVVGDGKVQC--EIADGAEIH 241
            AL+ +D  IS ++  L A S+++ K     T     ++++++ SV E+                   ++   F + +L+V KI  V   P SEKLY L +  GN+E K VCAG++ +L  +++   LVV + NLKP KL G  SEAM+LA   ++  G    V  L+PP G   G +V ++  D    V A K + S  W K+V  L V N  A +++KPL    G++    EI DG+ IH
Sbjct:    4 ALDLIDKAISTVDKLL-AASEVSSKSNSTRTAQNVVNAQQSVTSVAEQPQPSSHKYEAGGKVPPAKAVDRELFAKANLKVAKIMTVNEVPNSEKLYKLTVDVGNNEIKQVCAGLKPYLPTDQLLQLLVVVVVNLKPAKLAGELSEAMILAADTKAADGST-LVRTLAPPPGSEPGDVVMLEG-DLAAQVPA-KQMKSDDWKKIVESLAVKNFTATFSEKPLRTSKGQITLPSEIPDGSGIH 240          
BLAST of Gcaud7120.t1 vs. uniprot
Match: A0A8J4X8N2_CLAMG (Tyrosine--tRNA ligase, cytoplasmic n=1 Tax=Clarias magur TaxID=1594786 RepID=A0A8J4X8N2_CLAMG)

HSP 1 Score: 120 bits (300), Expect = 2.530e-27
Identity = 67/166 (40.36%), Postives = 103/166 (62.05%), Query Frame = 0
Query:   79 DLRVGKITEVGPHPESEKLYVLQISYGNDETKTVCAGMREFLSEEEMQNRLVVTICNLKPRKLRGIASEAMVLAGSCRSDGGEKETVVPLSPPEGVSEGSIVGVQDMDGERTVTAGKYVS--SKTWDKVVPRLQVING-LALYNDKPLVVGDGKVQCEIADGAEIH 241
            DLRVGK+  VG HPE++ LY+ +I  G ++ +TV +G+  ++ +EE+Q+RLVV +CNLKP+K+RGI S AM+L   C S+ GE + + PL PPEG + G  V V   DG  + T    +    K ++K+   L++ +  +A +N K L+   GK+ C+   G  IH
Sbjct:  872 DLRVGKVVSVGKHPEADTLYLEKIDVGEEQPRTVVSGLVAYVPQEELQDRLVVVLCNLKPQKMRGIESRAMLL---CASNDGEPKRLEPLDPPEGSAPGDRVFV---DGYSSGTPDDELKPKKKVFEKIQVDLKISDDCIAQWNKKDLMTKLGKITCKSLKGGSIH 1031          
BLAST of Gcaud7120.t1 vs. uniprot
Match: A0A6A5BWY6_NAEFO (tRNA-binding domain-containing protein n=1 Tax=Naegleria fowleri TaxID=5763 RepID=A0A6A5BWY6_NAEFO)

HSP 1 Score: 114 bits (286), Expect = 2.540e-27
Identity = 77/186 (41.40%), Postives = 105/186 (56.45%), Query Frame = 0
Query:   70 IETTQFLQCDLRVGKITEVGPHPESEKLYVLQISYGNDE---TKTVCAGMREFLSEEEMQNRLVVTICNLKPRKLRGIASEAMVLAGSCRSDGGEKETVVPLSPPEGVSEGSIVGVQ-DMDGERTVTAGKYVSS-------KTWDKVVPRLQVINGLALYNDKPLVVGDG---KVQCEIADGAEIH 241
            I  + F Q  + V KI  V  HPESEKLY + +S G  +   T+ + AG+R+F SE+++ +R V+ I NLKP+KL G+ SEAMVLAGSC S G + E V  L P E    G  V ++ D +  + V    YVSS         W+K+V  L V++G   Y  + L V      KV+CE+ DG EIH
Sbjct:   80 IPPSPFHQTYIVVAKIESVEKHPESEKLYKMTLSVGGQQGTTTRNLVAGLRKFYSEDQLLHRKVLAILNLKPKKLAGVVSEAMVLAGSCGS-GDDDEKVRVLDPAEEAQVGDRVILKTDFEHWKNV----YVSSPEERCSPNQWEKIVKELAVLDGQPSYAKQILCVASQQPLKVKCELPDGGEIH 260          
The following BLAST results are available for this feature:
BLAST of Gcaud7120.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IJ52_9FLOR1.130e-8256.85Tyrosine--tRNA ligase, cytoplasmic n=1 Tax=Gracila... [more]
R7QM31_CHOCR2.940e-6559.17tRNA-binding domain-containing protein n=1 Tax=Cho... [more]
UPI001CFF01477.200e-3141.30uncharacterized protein n=1 Tax=Naegleria lovanien... [more]
A0A150H261_GONPE2.570e-2942.20tRNA-binding domain-containing protein n=1 Tax=Gon... [more]
A0A7S1MIW1_NEODS6.150e-2940.96Hypothetical protein n=1 Tax=Neobodo designis TaxI... [more]
A9S3L0_PHYPA7.830e-2841.10Predicted protein n=1 Tax=Physcomitrium patens Tax... [more]
R4WDR5_RIPPE1.190e-2740.85Tyrosine--tRNA ligase n=1 Tax=Riptortus pedestris ... [more]
A0A250X343_9CHLO2.250e-2733.61tRNA-binding domain-containing protein n=1 Tax=Chl... [more]
A0A8J4X8N2_CLAMG2.530e-2740.36Tyrosine--tRNA ligase, cytoplasmic n=1 Tax=Clarias... [more]
A0A6A5BWY6_NAEFO2.540e-2741.40tRNA-binding domain-containing protein n=1 Tax=Nae... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002547tRNA-binding domainPFAMPF01588tRNA_bindcoord: 80..177
e-value: 1.6E-25
score: 89.0
IPR002547tRNA-binding domainPROSITEPS50886TRBDcoord: 74..181
score: 27.808592
NoneNo IPR availableGENE3D2.40.50.140coord: 73..239
e-value: 4.0E-43
score: 149.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 23..72
NoneNo IPR availablePANTHERPTHR11586TRNA-AMINOACYLATION COFACTOR ARC1 FAMILY MEMBERcoord: 29..241
NoneNo IPR availablePANTHERPTHR11586:SF39TYROSINE--TRNA LIGASE, CYTOPLASMICcoord: 29..241
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 75..203

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_26_length_75114_cov_4.470882contigNODE_26_length_75114_cov_4.470882:10584..11309 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7120.t1Gcaud7120.t1Gracilaria caudata M_176_S67 malemRNANODE_26_length_75114_cov_4.470882 10584..11309 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud7120.t1 ID=Gcaud7120.t1|Name=Gcaud7120.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=242bp
MDVLKPALETLDTIISNIETALKAGSDINKKDQEASTTAPDSKENIPSVK
EKKKKKDKKPKQPSPPSLPIETTQFLQCDLRVGKITEVGPHPESEKLYVL
QISYGNDETKTVCAGMREFLSEEEMQNRLVVTICNLKPRKLRGIASEAMV
LAGSCRSDGGEKETVVPLSPPEGVSEGSIVGVQDMDGERTVTAGKYVSSK
TWDKVVPRLQVINGLALYNDKPLVVGDGKVQCEIADGAEIH*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002547tRNA-bd_dom
IPR012340NA-bd_OB-fold