Gcaud7029.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud7029.t1
Unique NameGcaud7029.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length163
Homology
BLAST of Gcaud7029.t1 vs. uniprot
Match: A0A2V3IJF7_9FLOR (Succinate dehydrogenase assembly factor 3 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IJF7_9FLOR)

HSP 1 Score: 182 bits (461), Expect = 1.380e-56
Identity = 87/117 (74.36%), Postives = 110/117 (94.02%), Query Frame = 0
Query:   46 MQARHRLSLFRRIMRLHQLKLPDLQRSIGDQYVRQEFRAHRDVKPEQEKQFLQQWEEYAAHLAMEADIFGLGRDLAEREMETLSDDQKMQLERLKASAISVGVRERTEAGENPYKEK 162
            M ARHRLSL+RRI+RLH+LKLPDLQRS+GDQYVRQEFRAHRDVKPEQEKQFL QWE+YAAHL++EAD FGLGRDL++ ++E+LSDDQK QL+RL++SA S+G++E+ EAG+NPY+++
Sbjct:    1 MSARHRLSLYRRILRLHRLKLPDLQRSVGDQYVRQEFRAHRDVKPEQEKQFLHQWEDYAAHLSLEADFFGLGRDLSKADVESLSDDQKAQLQRLQSSAASIGIQEKAEAGDNPYEKQ 117          
BLAST of Gcaud7029.t1 vs. uniprot
Match: A0A7S4MLU7_9EUKA (Succinate dehydrogenase assembly factor 3 n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4MLU7_9EUKA)

HSP 1 Score: 77.0 bits (188), Expect = 2.020e-15
Identity = 41/91 (45.05%), Postives = 62/91 (68.13%), Query Frame = 0
Query:   53 SLFRRIMRLHQLKLPDLQRSIGDQYVRQEFRAHRDVKPEQEKQFLQQWEEYAAHLAMEADIFGLGRDLAEREMETLSDDQKMQLERLKASA 143
            +L+R I+R HQ KLP  Q+++ D YV++EFR HR   PE    F++ W+EY   +  +A+    G+DL+E+E++ LS +QK+QLERLK  A
Sbjct:    8 NLYRNILRQHQRKLPFDQKALADAYVKKEFRDHRKAAPEYVTGFMKAWDEYLVIIKQQAEP---GKDLSEQEIQQLSPEQKLQLERLKEEA 95          
BLAST of Gcaud7029.t1 vs. uniprot
Match: A0A1X6P4M6_PORUM (Succinate dehydrogenase assembly factor 3 n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P4M6_PORUM)

HSP 1 Score: 77.4 bits (189), Expect = 4.230e-15
Identity = 43/98 (43.88%), Postives = 64/98 (65.31%), Query Frame = 0
Query:   52 LSLFRRIMRLHQLKLPDLQRSIGDQYVRQEFRAHRDVKPEQEKQFLQQWEEYAAHLAMEADIFGLGRDLAEREMETLSDDQKMQLERLKASAISVGVR 149
            L L+R ++R+H   LP  QR++GD+YVR+EF+AH++V+P Q   F+Q W+EY  HLA  A    +GRDL     E LS++Q  +L+ L A+A +   R
Sbjct:   28 LGLYRSLLRIHAAVLPAAQRALGDRYVREEFKAHKEVEPAQADAFMQTWQEYWVHLAR-ARGGPVGRDLDGGTSEALSEEQTAKLDELAAAARAASPR 124          
BLAST of Gcaud7029.t1 vs. uniprot
Match: A0A836CAZ4_9STRA (Succinate dehydrogenase assembly factor 3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAZ4_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 9.130e-14
Identity = 38/93 (40.86%), Postives = 59/93 (63.44%), Query Frame = 0
Query:   49 RHRLSLFRRIMRLHQLKLPDLQRSIGDQYVRQEFRAHRDVKPEQEKQFLQQWEEYAAHLAMEADIFGLGRDLAEREMETLSDDQKMQLERLKA 141
            R  L L+R I+ LH+  LP   R++GD+Y++ EF+AH+D KPE    F++ WE Y   L M+   FG  RDL   E ++L+ +Q+ +LE L++
Sbjct:    8 RAALKLYRSILHLHRTVLPASHRAVGDKYIKAEFKAHKDAKPEHVPPFMRGWETYKERLRMQQSQFG--RDLRTDEQQSLTAEQQQKLEELRS 98          
BLAST of Gcaud7029.t1 vs. uniprot
Match: K3XC72_GLOUD (Succinate dehydrogenase assembly factor 3 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XC72_GLOUD)

HSP 1 Score: 72.4 bits (176), Expect = 1.350e-13
Identity = 40/101 (39.60%), Postives = 63/101 (62.38%), Query Frame = 0
Query:   47 QARHRLSLFRRIMRLHQLKLPDLQRSIGDQYVRQEFRAHRDVKPEQEKQFLQQWEEYAAHLAMEADIFGLGRDLAEREMETLSDDQKMQLERLKASAISVG 147
            Q    L L+RRI+ LH+ KL    R +GDQYVR EF+ H+D  P+    F+++W++Y A ++ + D FG  ++L+  E   L D+Q+ +L+ LK +A  VG
Sbjct:    3 QGSEALRLYRRILTLHKKKLAPHMRILGDQYVRDEFKRHKDAAPKFVPLFMKEWQQYEAFMSQKQDTFG--KELSADEKALLDDEQQEKLKSLKDAAKLVG 101          
BLAST of Gcaud7029.t1 vs. uniprot
Match: A0A2D4BKK1_PYTIN (Ribonuclease P n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BKK1_PYTIN)

HSP 1 Score: 75.9 bits (185), Expect = 4.930e-13
Identity = 44/94 (46.81%), Postives = 61/94 (64.89%), Query Frame = 0
Query:   50 HRLSLFRRIMRLHQLKLPDLQRSIGDQYVRQEFRAHRDVKPEQEKQFLQQWEEYAAHLAMEADIFGLGRDLAEREMETLSDDQKMQLERLKASA 143
            H L L+RRI+ LH+ KL    R +GD YVR EFR H+D   +    FLQ+WE+YA  L+ + D FG  RDLAE +   L+D+Q+ +L+ LK +A
Sbjct:   17 HVLGLYRRILSLHKRKLDPRMRVLGDAYVRDEFRRHKDAAAKFVPLFLQEWEQYANMLSQKHDQFG--RDLAESDRVLLNDEQREKLQSLKDAA 108          
BLAST of Gcaud7029.t1 vs. uniprot
Match: A0A6B2LUV6_9EUKA (Succinate dehydrogenase assembly factor 3 n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LUV6_9EUKA)

HSP 1 Score: 70.5 bits (171), Expect = 6.470e-13
Identity = 41/90 (45.56%), Postives = 56/90 (62.22%), Query Frame = 0
Query:   52 LSLFRRIMRLHQLKLPDLQRSIGDQYVRQEFRAHRDVK-PEQEKQFLQQWEEYAAHLAMEADIFGLGRDLAEREMETLSDDQKMQLERLK 140
            LSL+R I+R+HQ KLP   RS+GD YVR EF+A +  K P     FL+ W +Y   L++  DI  LG+DL + +   LS +Q  QL +LK
Sbjct:    4 LSLYRSILRMHQKKLPKDLRSLGDSYVRSEFKAIKKAKTPNFHTTFLKSWNDYLEKLSLSQDIQNLGKDLHQSDKAKLSKEQIYQLNQLK 93          
BLAST of Gcaud7029.t1 vs. uniprot
Match: A0A225WH31_9STRA (Succinate dehydrogenase assembly factor 3 n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WH31_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.030e-12
Identity = 38/96 (39.58%), Postives = 62/96 (64.58%), Query Frame = 0
Query:   52 LSLFRRIMRLHQLKLPDLQRSIGDQYVRQEFRAHRDVKPEQEKQFLQQWEEYAAHLAMEADIFGLGRDLAEREMETLSDDQKMQLERLKASAISVG 147
            L+L+RRI+ LH+ KL    R +GDQYVR EF+ H+D   +    FLQ+W++YAA ++ +   FG   +L+  + + L  +QK++L+ L+ +A  VG
Sbjct:    8 LALYRRILTLHRQKLEPHMRVLGDQYVRDEFKRHKDAAAKFVPLFLQEWQQYAAAMSQKQSRFG--EELSSADKQLLDGEQKLKLQSLQDAAKKVG 101          
BLAST of Gcaud7029.t1 vs. uniprot
Match: A0A485L6U8_9STRA (Succinate dehydrogenase assembly factor 3 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L6U8_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 3.880e-12
Identity = 40/102 (39.22%), Postives = 61/102 (59.80%), Query Frame = 0
Query:   46 MQARHRLSLFRRIMRLHQLKLPDLQRSIGDQYVRQEFRAHRDVKPEQEKQFLQQWEEYAAHLAMEADIFGLGRDLAEREMETLSDDQKMQLERLKASAISVG 147
            MQ +  L+L+R I+RLH+ KL  + R +GD+YV+ EF+ H++ KPE  K FL +W++Y   L+     FG   DL+    + L D QK +L+ L  +A   G
Sbjct:    1 MQRQQVLALYRGILRLHRQKLEPVMRVLGDRYVQDEFKLHKNAKPEFVKGFLAEWQQYHKMLSERETHFG--EDLSADHRKLLDDQQKKKLQDLHTAATKQG 100          
BLAST of Gcaud7029.t1 vs. uniprot
Match: A0A6G0W660_9STRA (Succinate dehydrogenase assembly factor 3 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W660_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 5.460e-12
Identity = 39/96 (40.62%), Postives = 59/96 (61.46%), Query Frame = 0
Query:   52 LSLFRRIMRLHQLKLPDLQRSIGDQYVRQEFRAHRDVKPEQEKQFLQQWEEYAAHLAMEADIFGLGRDLAEREMETLSDDQKMQLERLKASAISVG 147
            L+L+R I+RLH+ KL  + R +GD+YVR+EF+ H++ KPE  K FL +W+ Y   L  +   FG  +DL+      L D+QK +L+ L  +A   G
Sbjct:    7 LALYRGILRLHRQKLEPVMRVLGDRYVREEFKLHKNAKPEFVKGFLTEWQGYHDMLLTKETHFG--QDLSVDHRRLLDDEQKKKLQDLHTAATKAG 100          
The following BLAST results are available for this feature:
BLAST of Gcaud7029.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IJF7_9FLOR1.380e-5674.36Succinate dehydrogenase assembly factor 3 n=1 Tax=... [more]
A0A7S4MLU7_9EUKA2.020e-1545.05Succinate dehydrogenase assembly factor 3 n=1 Tax=... [more]
A0A1X6P4M6_PORUM4.230e-1543.88Succinate dehydrogenase assembly factor 3 n=1 Tax=... [more]
A0A836CAZ4_9STRA9.130e-1440.86Succinate dehydrogenase assembly factor 3 n=1 Tax=... [more]
K3XC72_GLOUD1.350e-1339.60Succinate dehydrogenase assembly factor 3 n=1 Tax=... [more]
A0A2D4BKK1_PYTIN4.930e-1346.81Ribonuclease P n=1 Tax=Pythium insidiosum TaxID=11... [more]
A0A6B2LUV6_9EUKA6.470e-1345.56Succinate dehydrogenase assembly factor 3 n=1 Tax=... [more]
A0A225WH31_9STRA1.030e-1239.58Succinate dehydrogenase assembly factor 3 n=1 Tax=... [more]
A0A485L6U8_9STRA3.880e-1239.22Succinate dehydrogenase assembly factor 3 n=1 Tax=... [more]
A0A6G0W660_9STRA5.460e-1240.63Succinate dehydrogenase assembly factor 3 n=1 Tax=... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF13233Complex1_LYR_2coord: 52..110
e-value: 3.4E-13
score: 50.1
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 7..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..6
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 24..162
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 19..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..23
NoneNo IPR availableCDDcd20270Complex1_LYR_SDHAF3_LYRM10coord: 52..107
e-value: 3.23488E-24
score: 87.2481
IPR008381Succinate dehydrogenase assembly factor 3, mitochondrialPANTHERPTHR13137DC11 ACN9 HOMOLOGcoord: 45..150

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_148_length_43424_cov_4.421157contigNODE_148_length_43424_cov_4.421157:35642..36290 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7029.t1Gcaud7029.t1Gracilaria caudata M_176_S67 malemRNANODE_148_length_43424_cov_4.421157 35642..36290 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud7029.t1 ID=Gcaud7029.t1|Name=Gcaud7029.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=163bp
MGFLEDLFVASQFCLSFLDIVHSRLEPFPPLNLPAVYLIINSATKMQARH
RLSLFRRIMRLHQLKLPDLQRSIGDQYVRQEFRAHRDVKPEQEKQFLQQW
EEYAAHLAMEADIFGLGRDLAEREMETLSDDQKMQLERLKASAISVGVRE
RTEAGENPYKEK*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008381SDHAF3/Sdh7