Gcaud7010.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud7010.t1
Unique NameGcaud7010.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length144
Homology
BLAST of Gcaud7010.t1 vs. uniprot
Match: A0A2V3J3W2_9FLOR (GATA-type domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J3W2_9FLOR)

HSP 1 Score: 107 bits (266), Expect = 7.430e-26
Identity = 51/74 (68.92%), Postives = 57/74 (77.03%), Query Frame = 0
Query:   10 RVCGWCGITRTTQWRIGPTGGSLEMSTLCNACGINYRRTLQKVDCDERRLNLDVLAKHQGTRLSIGKAFKRQRK 83
            +VCGWCG  +T+QWR+GPT GSL M TLCNACGINYRR LQK       L+LD LA+ QGTRLSI KA KRQRK
Sbjct:   53 KVCGWCGRCQTSQWRVGPTTGSLAMGTLCNACGINYRRALQKAP--NGMLDLDALAQQQGTRLSIQKALKRQRK 124          
BLAST of Gcaud7010.t1 vs. uniprot
Match: A0A2V3IEZ2_9FLOR (GATA-type domain-containing protein n=2 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IEZ2_9FLOR)

HSP 1 Score: 92.0 bits (227), Expect = 2.970e-20
Identity = 46/74 (62.16%), Postives = 53/74 (71.62%), Query Frame = 0
Query:   10 RVCGWCGITRTTQWRIGPTGGSLEMSTLCNACGINYRRTLQKVDCDERRLNLDVLAKHQGTRLSIGKAFKRQRK 83
            +VCGWC    T+QWR+G T GS  M TLCNACGINYRRT +KV      L+LDVLA++   RLSI K FKRQRK
Sbjct:   46 KVCGWCNTQTTSQWRVGCTTGSEAMKTLCNACGINYRRTQRKVP--NLVLDLDVLAQNHSKRLSILKEFKRQRK 117          
BLAST of Gcaud7010.t1 vs. uniprot
Match: A0A2V3IF43_9FLOR (GATA zinc finger domain-containing protein 12 n=2 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IF43_9FLOR)

HSP 1 Score: 80.5 bits (197), Expect = 1.060e-15
Identity = 41/74 (55.41%), Postives = 47/74 (63.51%), Query Frame = 0
Query:   10 RVCGWCGITRTTQWRIGPTGGSLEMSTLCNACGINYRRTLQKVDCDERRLNLDVLAKHQGTRLSIGKAFKRQRK 83
            R+CGWC    T QWR+G T GS  M TLCNACGINYRR  +KV      ++ DVL + Q  RLSI K  KRQ K
Sbjct:   69 RICGWCKTQDTIQWRVGCTTGSEAMKTLCNACGINYRRAQRKVPF--LVVDFDVLVQKQRVRLSIQKELKRQLK 140          
BLAST of Gcaud7010.t1 vs. uniprot
Match: A0A6A3A233_HIBSY (GATA transcription factor 5 n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3A233_HIBSY)

HSP 1 Score: 55.5 bits (132), Expect = 3.150e-6
Identity = 22/39 (56.41%), Postives = 27/39 (69.23%), Query Frame = 0
Query:    8 PLRVCGWCGITRTTQWRIGPTGGSLEMSTLCNACGINYR 46
            P R CG CG+T+T QWR GPTG      TLCNACG+ ++
Sbjct:  286 PTRRCGHCGVTKTPQWRAGPTGAK----TLCNACGVRFK 320          
BLAST of Gcaud7010.t1 vs. uniprot
Match: L8HK85_ACACA (GATA zinc finger domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HK85_ACACA)

HSP 1 Score: 54.7 bits (130), Expect = 5.820e-6
Identity = 23/40 (57.50%), Postives = 28/40 (70.00%), Query Frame = 0
Query:   10 RVCGWCGITRTTQWRIGPTGGSLEMSTLCNACGINYRRTL 49
            RVC  CG T+TT+WR+GP G      TLCNACG+ YR+ L
Sbjct:  280 RVCTHCGATKTTEWRMGPEG----RGTLCNACGLRYRKKL 315          
BLAST of Gcaud7010.t1 vs. uniprot
Match: UPI00098DE63A (GATA transcription factor 5-like n=1 Tax=Asparagus officinalis TaxID=4686 RepID=UPI00098DE63A)

HSP 1 Score: 54.3 bits (129), Expect = 7.440e-6
Identity = 22/41 (53.66%), Postives = 28/41 (68.29%), Query Frame = 0
Query:    6 LTPLRVCGWCGITRTTQWRIGPTGGSLEMSTLCNACGINYR 46
            + PLR C  CG+++T QWR GPTG      TLCNACG+ Y+
Sbjct:  214 ILPLRKCKHCGVSKTPQWRAGPTGPK----TLCNACGVRYK 250          
The following BLAST results are available for this feature:
BLAST of Gcaud7010.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A2V3J3W2_9FLOR7.430e-2668.92GATA-type domain-containing protein n=1 Tax=Gracil... [more]
A0A2V3IEZ2_9FLOR2.970e-2062.16GATA-type domain-containing protein n=2 Tax=Gracil... [more]
A0A2V3IF43_9FLOR1.060e-1555.41GATA zinc finger domain-containing protein 12 n=2 ... [more]
A0A6A3A233_HIBSY3.150e-656.41GATA transcription factor 5 n=1 Tax=Hibiscus syria... [more]
L8HK85_ACACA5.820e-657.50GATA zinc finger domain containing protein n=1 Tax... [more]
UPI00098DE63A7.440e-653.66GATA transcription factor 5-like n=1 Tax=Asparagus... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000679Zinc finger, GATA-typeSMARTSM00401GATA_3coord: 6..66
e-value: 2.4E-4
score: 22.7
IPR000679Zinc finger, GATA-typePFAMPF00320GATAcoord: 12..49
e-value: 3.1E-8
score: 33.1
IPR000679Zinc finger, GATA-typePROSITEPS50114GATA_ZN_FINGER_2coord: 6..46
score: 9.024593
IPR000679Zinc finger, GATA-typeCDDcd00202ZnF_GATAcoord: 11..61
e-value: 5.54148E-8
score: 44.671
IPR013088Zinc finger, NHR/GATA-typeGENE3D3.30.50.10coord: 8..52
e-value: 9.9E-11
score: 43.1
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 6..53

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_454_length_24914_cov_4.033155contigNODE_454_length_24914_cov_4.033155:14557..16750 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7010.t1Gcaud7010.t1Gracilaria caudata M_176_S67 malemRNANODE_454_length_24914_cov_4.033155 14557..16750 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud7010.t1 ID=Gcaud7010.t1|Name=Gcaud7010.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=144bp
MDAATLTPLRVCGWCGITRTTQWRIGPTGGSLEMSTLCNACGINYRRTLQ
KVDCDERRLNLDVLAKHQGTRLSIGKAFKRQRKGLGRLEGVHVDLQLPRT
YLLQSTYDPVVHVRILRNGRHALRAVSTKSTNTGAIPISLHPS*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000679Znf_GATA
IPR013088Znf_NHR/GATA