Gcaud6998.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud6998.t1
Unique NameGcaud6998.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length431
Homology
BLAST of Gcaud6998.t1 vs. uniprot
Match: A0A2V3ITA9_9FLOR (Protein sel-1-like n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ITA9_9FLOR)

HSP 1 Score: 392 bits (1008), Expect = 1.080e-129
Identity = 215/421 (51.07%), Postives = 272/421 (64.61%), Query Frame = 0
Query:    1 MNLSASTLINFARQLEYGPVGRRGYRVASRYVALGILHYVIRRWPDNTEAQCLKGEMLLSFSHYGRNGLFVPRSVLDEAMSCFEAAEHEPLGLFLKGRLMLTTEAIHQDTQKASLGKQLVLKAADDGCARALVFLAHRYEYPQLDRGVSFASDVPKDRESRERFIVGLYEKAAAANDPDALNDLGTSYAQEYGSLEGDFDTVVQYYLRAIVAGSIHAFDNLGTHYETGMGMRFPERVDYDKXXXXXXXXXXXXXXXXXXXXXXXXXXXMADTLQKDLRKAEKYYLIAVRLGNDCSDLQTVARTVRDLSSLYITRIKLGAPDDEETWRCDKMLRSIFPS-DLADEFLSKANRGVAQIIRSRSTSKITKLLGEENARLVSKRVRSVWKNSESMLGEEREALLEHLTGGEDVKQLIRPRKRRAT 420
            MNL    LI FARQLE+GP GR G R A RY+AL IL +V++  P N  A CLKGE+LL   HYGRN    P SVL+EA+SCFEAA H+P GLFLKGRL+LT EAIH+D  K+ +GK  VLKAA  GC RA VFLAHRYEYPQLD+ VSFASDVP+DR+ RERFIV LY++AA ANDPD LNDLGTSYA+ YG L+ DFD V                            MRFP+R+DY +                  XXXXXXXXX  D L KDL +A+++Y++ ++L NDC+DLQT  R V DL SL +T IKL  P  ++  +C+K+L +I PS +  DE+L + N+ + Q +R RS   + ++LGEEN+RL  KR + VW N+E +   ++EA LEH+ G    +    PRK+R T
Sbjct:   80 MNLPPPLLIEFARQLEFGPCGRVGERPAQRYLALCILSHVLQEHPKNIHALCLKGELLLPVVHYGRNYPTTPLSVLEEALSCFEAASHDPTGLFLKGRLLLTMEAIHKDVDKSKMGKACVLKAARCGCGRASVFLAHRYEYPQLDQSVSFASDVPRDRDERERFIVDLYKQAAEANDPDGLNDLGTSYAEGYGGLQPDFDVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXMRFPDRIDYVRALFYYKQGSQRGCPKCAYXXXXXXXXXXXDVLPKDLTRAKRFYMLCLKLCNDCNDLQTAGRAVSDLMSLLVTTIKLEDPGSQKARKCEKLLGTIIPSNESGDEYLERVNKALLQAVRKRSKRTLVRMLGEENSRLAFKRAKEVWNNNEGLPDADQEAALEHMFGNHAFQSPEPPRKKRNT 500          
BLAST of Gcaud6998.t1 vs. uniprot
Match: R7Q7Q9_CHOCR (Sel1-repeat containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q7Q9_CHOCR)

HSP 1 Score: 297 bits (760), Expect = 4.810e-92
Identity = 168/407 (41.28%), Postives = 236/407 (57.99%), Query Frame = 0
Query:    2 NLSASTLINFARQLEYGPVGRRGYRVASRYVALGILHYVIRRWPDNTEAQCLKGEMLLSFSHYGRNGLFVPRSVLDEAMSCFEAAEH--EPLGLFLKGRLMLTTEAIHQDTQKASLGKQLVLKAADDGCARALVFLAHRYEYPQLDRGVSFASDVPKDRESRERFIVGLYEKAAAANDPDALNDLGTSYAQEYGSLEGDFDTVVQYYLRAIVAGSIHAFDNLGTHYETGMGMRFPERVDYDKXXXXXXXXXXXXXXXXXXXXXXXXXXXMADTLQKDLRKAEKYYLIAVRLGNDCSDLQTVARTVRDLSSLYITRIKLGAPDDEETWRCDKMLRSIF-PSDLADEFLSKANRGVAQIIRSRSTSKITKLLGEENARLVSKRVRSVWKNSESMLGEEREA-LLEHLTG 404
            N    +LI   R     PVGR G R + R V + +   ++RR P+N  A CLKGE L+S +HYG+N  + PRSV+ EA   F+ A         FLKGR +LT E +H++ ++A LG   V  AA + C RALVFLAHRYE PQLD   SFASD+PK +  +ERFI+G Y+KAA   + DA+NDLGTSYA+ YG+LE DFD  V+ Y+  I AGS+HA+DN+GTHYETGM  RFP R+   K                           M+ T+  + +KAE YY+ A+RL  D +D   VA+  +DL +LYITRIK+  PD  +     + L S+    D+  + L + N+ +A  +R + T+ ++KL+G+ N + + K  ++V +  +     E  A LL H+ G
Sbjct:   88 NAPTDSLIELIRVCFDAPVGRVGDRQSVRTVGVLLCDELLRRDPNNVHALCLKGEALVSCAHYGKNDPYAPRSVMQEAYELFDTASKLGSHTATFLKGRWLLTMEPLHRNAEQAHLGVTCVKAAARELCPRALVFLAHRYETPQLDSSFSFASDLPKGKAQKERFILGYYKKAAELGNADAINDLGTSYAEGYGNLECDFDKAVEQYILGIEAGSLHAYDNVGTHYETGMAGRFPGRIHLGKALYYYRLGAKQRCPKCTYNLAVAYDEGMSGTVSMNNKKAENYYIHAIRLAEDSNDAVVVAKAAKDLVALYITRIKVNRPDSIQVTSARRRLFSVVGDEDIIQQTLLQVNKSIATAMRGKITA-LSKLVGDMNCKTIVKHAKAVDQMVKRDKASETNAKLLFHILG 493          
The following BLAST results are available for this feature:
BLAST of Gcaud6998.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3ITA9_9FLOR1.080e-12951.07Protein sel-1-like n=1 Tax=Gracilariopsis chorda T... [more]
R7Q7Q9_CHOCR4.810e-9241.28Sel1-repeat containing protein n=1 Tax=Chondrus cr... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006597Sel1-like repeatSMARTSM00671sel1coord: 215..254
e-value: 70.0
score: 6.3
coord: 255..292
e-value: 0.0027
score: 27.0
coord: 178..214
e-value: 81.0
score: 5.8
IPR006597Sel1-like repeatPFAMPF08238Sel1coord: 256..292
e-value: 0.0013
score: 19.3
coord: 178..207
e-value: 27.0
score: 5.6
coord: 66..86
e-value: 230.0
score: 2.7
coord: 220..253
e-value: 0.025
score: 15.3
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 45..324
e-value: 3.5E-31
score: 110.2
NoneNo IPR availablePANTHERPTHR43628ACTIVATOR OF C KINASE PROTEIN 1-RELATEDcoord: 238..313
NoneNo IPR availablePANTHERPTHR43628:SF9SEL1-REPEAT-CONTAINING PROTEIN YBEQcoord: 238..313
NoneNo IPR availablePANTHERPTHR43628:SF9SEL1-REPEAT-CONTAINING PROTEIN YBEQcoord: 85..232
NoneNo IPR availablePANTHERPTHR43628ACTIVATOR OF C KINASE PROTEIN 1-RELATEDcoord: 85..232
NoneNo IPR availableSUPERFAMILY81901HCP-likecoord: 168..294

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_75_length_56064_cov_4.301592contigNODE_75_length_56064_cov_4.301592:15287..16579 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud6998.t1Gcaud6998.t1Gracilaria caudata M_176_S67 malemRNANODE_75_length_56064_cov_4.301592 15287..16579 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud6998.t1 ID=Gcaud6998.t1|Name=Gcaud6998.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=431bp
MNLSASTLINFARQLEYGPVGRRGYRVASRYVALGILHYVIRRWPDNTEA
QCLKGEMLLSFSHYGRNGLFVPRSVLDEAMSCFEAAEHEPLGLFLKGRLM
LTTEAIHQDTQKASLGKQLVLKAADDGCARALVFLAHRYEYPQLDRGVSF
ASDVPKDRESRERFIVGLYEKAAAANDPDALNDLGTSYAQEYGSLEGDFD
TVVQYYLRAIVAGSIHAFDNLGTHYETGMGMRFPERVDYDKALFYYRQGA
RKGCPKCAYNLGAAYEEGMADTLQKDLRKAEKYYLIAVRLGNDCSDLQTV
ARTVRDLSSLYITRIKLGAPDDEETWRCDKMLRSIFPSDLADEFLSKANR
GVAQIIRSRSTSKITKLLGEENARLVSKRVRSVWKNSESMLGEEREALLE
HLTGGEDVKQLIRPRKRRATAAKAARRATS*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006597Sel1-like
IPR011990TPR-like_helical_dom_sf