Gcaud6964.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud6964.t1
Unique NameGcaud6964.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length176
Homology
BLAST of Gcaud6964.t1 vs. uniprot
Match: A0A2V3ISN2_9FLOR (Aminoacyl-tRNA hydrolase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ISN2_9FLOR)

HSP 1 Score: 239 bits (610), Expect = 3.090e-78
Identity = 127/175 (72.57%), Postives = 141/175 (80.57%), Query Frame = 0
Query:    1 MLSDLSPRDGTTGAIGLATGFLLGFLTRHLLHRRLHQLPEYDSDDDTGFVSGSYARSNEEHKLVLCVRTDLKMQKGKIAAQVGHATLGAYKAAARSTPAALRIWEHNAQPKIAVQIRSEREARSLQNHASRLALPTYMVYDAGRTQIAAGSMTVLAVGPGPVSLVNQVTGKLKLL 175
            M+S+LS +DGT G +GLA GFLLGFLT H+L RRL     Y   D       SY  S EEH+L+LCVRTDLKMQKGKIAAQVGHATLGA+KAAAR  PAAL+ WE NAQPKIAVQIRS +EA+ LQ HA+ L L TYMVYDAG+TQIAAGSMTVLAVGPGPVSLVNQVTGKL+LL
Sbjct:    1 MVSELSAKDGTAGVVGLAAGFLLGFLTNHIL-RRLKTQDVYYESDXXXXPPTSYRASGEEHRLILCVRTDLKMQKGKIAAQVGHATLGAFKAAARRAPAALKTWEVNAQPKIAVQIRSYKEAQQLQRHANSLGLVTYMVYDAGKTQIAAGSMTVLAVGPGPVSLVNQVTGKLRLL 174          
BLAST of Gcaud6964.t1 vs. uniprot
Match: R7QT15_CHOCR (Aminoacyl-tRNA hydrolase n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QT15_CHOCR)

HSP 1 Score: 197 bits (502), Expect = 8.790e-62
Identity = 112/179 (62.57%), Postives = 127/179 (70.95%), Query Frame = 0
Query:    1 MLSDLSPRDGTTGAIGLATGFLLGFLTRHLLHRRLHQLPEY---DSDDDTGFV-SGSYARSNEEHKLVLCVRTDLKMQKGKIAAQVGHATLGAYKAAARSTPAALRIWEHNAQPKIAVQIRSEREARSLQNHASRLALPTYMVYDAGRTQIAAGSMTVLAVGPGPVSLVNQVTGKLKLL 175
            M S  S RD   G IG+ TGF+LG  TR +  R   QL      DS++D G+  +GS     E HKLVLCVRTDLKM KGKIAAQVGHAT+GAYK A    P ALRIWEHNAQPKIA+Q+ S  +A +L   A R  L TYMV+DAGRTQIAAGS+TVLAVGPGP SLVNQVTG L+LL
Sbjct:    1 MSSPFSLRDTLAGGIGVTTGFVLGLFTRTVFRRFRPQLTSQYSSDSEEDIGWEPAGSVG---EAHKLVLCVRTDLKMSKGKIAAQVGHATIGAYKRAETRNPTALRIWEHNAQPKIALQVSSRHQAEALDREARRRGLVTYMVHDAGRTQIAAGSLTVLAVGPGPDSLVNQVTGSLRLL 176          
BLAST of Gcaud6964.t1 vs. uniprot
Match: A0A7S1XF27_9RHOD (Aminoacyl-tRNA hydrolase n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XF27_9RHOD)

HSP 1 Score: 153 bits (386), Expect = 2.340e-44
Identity = 87/155 (56.13%), Postives = 106/155 (68.39%), Query Frame = 0
Query:   22 LLGFLTRHLLHRRLHQLPEYDSDDDTGFVS-GSYARSNEEHKLVLCVRTDLKMQKGKIAAQVGHATLGAYKAAARSTPAALRIWEHNAQPKIAVQIRSEREARSLQNHASRLALPTYMVYDAGRTQIAAGSMTVLAVGPGPVSLVNQVTGKLKLL 175
            +L  L+  +++   H +     ++D  FV  G+      E KLV CVRTDLKM KGKIAAQ GHATLGA+K A R  P AL +WE  AQ KIA+QI+S  EA +L+  A  L LPTYMVYDAGRTQIAAGS+TVLA+GP  V  ++QVTG LKLL
Sbjct:    9 ILSGLSGFIINELRHYVRVSRRENDATFVGHGNGPDGAREFKLVFCVRTDLKMTKGKIAAQCGHATLGAFKVAQRKDPNALGLWEAEAQAKIALQIKSAAEAVTLERKARALQLPTYMVYDAGRTQIAAGSLTVLAIGPADVETIDQVTGHLKLL 163          
BLAST of Gcaud6964.t1 vs. uniprot
Match: A0A7S2ZHR8_9RHOD (Aminoacyl-tRNA hydrolase n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZHR8_9RHOD)

HSP 1 Score: 152 bits (383), Expect = 6.460e-44
Identity = 88/165 (53.33%), Postives = 105/165 (63.64%), Query Frame = 0
Query:   11 TTGAIGLATGFLLGFLTRHLLHRRLHQLPEYDSDDDTGFVSGSYARSNEEHKLVLCVRTDLKMQKGKIAAQVGHATLGAYKAAARSTPAALRIWEHNAQPKIAVQIRSEREARSLQNHASRLALPTYMVYDAGRTQIAAGSMTVLAVGPGPVSLVNQVTGKLKLL 175
            T   +G+  G L+GFL              +D     G  SG +     E+K+VLCVRTDL M+KGKIAAQ GHATLG YK A R  P  +  WE NAQPKIAVQI+S  EAR L+  A    +PTYMVYDAGRTQI+AGSMTVLA+GP     ++ +TGKLKLL
Sbjct:    4 TEEVLGIVGGLLVGFLIGRSRGXXXXXXXXFDGVFSEG--SGLHG----EYKIVLCVRTDLGMKKGKIAAQCGHATLGVYKEAVRFRPREVNAWEENAQPKIAVQIKSMNEARGLERAARSRGIPTYMVYDAGRTQISAGSMTVLAIGPARKDELDAITGKLKLL 162          
BLAST of Gcaud6964.t1 vs. uniprot
Match: A0A7S1TJX5_9RHOD (Aminoacyl-tRNA hydrolase n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1TJX5_9RHOD)

HSP 1 Score: 144 bits (364), Expect = 1.530e-41
Identity = 75/116 (64.66%), Postives = 88/116 (75.86%), Query Frame = 0
Query:   60 EHKLVLCVRTDLKMQKGKIAAQVGHATLGAYKAAARSTPAALRIWEHNAQPKIAVQIRSEREARSLQNHASRLALPTYMVYDAGRTQIAAGSMTVLAVGPGPVSLVNQVTGKLKLL 175
            E K+VLCVRTDLKM+KGKI AQ GHA +GAY+AA  + P  L  W +NAQPKIA+QI SEREAR L   A +  L TY VYDAGRTQ+ AGS+TVLA+GPGP   ++ VTG LKLL
Sbjct:    9 EAKMVLCVRTDLKMKKGKIGAQCGHAAIGAYEAAQDAAPVWLNTWIYNAQPKIALQIASEREARELAKRAKQRGLCTYTVYDAGRTQVKAGSLTVLAIGPGPADEIDSVTGHLKLL 124          
BLAST of Gcaud6964.t1 vs. uniprot
Match: A0A6T6PRY8_9RHOD (Aminoacyl-tRNA hydrolase n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A6T6PRY8_9RHOD)

HSP 1 Score: 145 bits (366), Expect = 2.430e-41
Identity = 83/167 (49.70%), Postives = 109/167 (65.27%), Query Frame = 0
Query:    9 DGTTGAIGLATGFLLGFLTRHLLHRRLHQLPEYDSDDDTGFVSGSYARSNEEHKLVLCVRTDLKMQKGKIAAQVGHATLGAYKAAARSTPAALRIWEHNAQPKIAVQIRSEREARSLQNHASRLALPTYMVYDAGRTQIAAGSMTVLAVGPGPVSLVNQVTGKLKLL 175
            D   G   +  G + G+L   + HR   +L    +        G+++ S   +KL+ CVRTDLKM KGKIAAQ GHATLGAY++A    P A+ +WE NAQPKIA+QI+S  EA S+Q  A    + +Y VYDAGRTQIAAGS+TV+AVGPGP  +++Q+T  LKLL
Sbjct:    4 DVAFGWFHVIAGVIGGYLLCEIRHRGGKKLRMIRA--------GTHSLSGGNYKLIFCVRTDLKMTKGKIAAQCGHATLGAYQSALIHNPNAVAMWESNAQPKIALQIKSLSEAESIQRIARSKGVSSYAVYDAGRTQIAAGSLTVVAVGPGPSEVIDQITRHLKLL 162          
BLAST of Gcaud6964.t1 vs. uniprot
Match: A0A5J4Z8V8_PORPP (Aminoacyl-tRNA hydrolase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z8V8_PORPP)

HSP 1 Score: 142 bits (357), Expect = 1.100e-39
Identity = 74/114 (64.91%), Postives = 86/114 (75.44%), Query Frame = 0
Query:   62 KLVLCVRTDLKMQKGKIAAQVGHATLGAYKAAARSTPAALRIWEHNAQPKIAVQIRSEREARSLQNHASRLALPTYMVYDAGRTQIAAGSMTVLAVGPGPVSLVNQVTGKLKLL 175
            K+V CVRTDLKM +GKIAAQVGHATLGAY+ A R  P     WE  AQPKIA+QI SE EA  +Q  A R  L  Y V DAG+TQIAAGS+TV+A+GPGP  L++Q+TGKLKLL
Sbjct:   72 KMVFCVRTDLKMGRGKIAAQVGHATLGAYQIALRHAPQYCTAWERGAQPKIALQINSESEAIEMQRKAHRAGLVAYDVLDAGKTQIAAGSLTVVAIGPGPAHLIDQITGKLKLL 185          
BLAST of Gcaud6964.t1 vs. uniprot
Match: A0A7S2TJL3_9EUKA (Aminoacyl-tRNA hydrolase n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TJL3_9EUKA)

HSP 1 Score: 137 bits (345), Expect = 2.580e-37
Identity = 70/114 (61.40%), Postives = 86/114 (75.44%), Query Frame = 0
Query:   62 KLVLCVRTDLKMQKGKIAAQVGHATLGAYKAAARSTPAALRIWEHNAQPKIAVQIRSEREARSLQNHASRLALPTYMVYDAGRTQIAAGSMTVLAVGPGPVSLVNQVTGKLKLL 175
            KLVLCVRTDL+MQKGK+ AQ GHA  G  +         LR W +NAQPKIA+++RSE + R LQ+ A R  LPT++V DAGRTQIAAGS+TVLA+GPGP+ L+N +TG LKLL
Sbjct:  118 KLVLCVRTDLRMQKGKMCAQCGHAVAGIMEDLLTYDAQLLRQWTNNAQPKIALKVRSEEQLRELQSSARRFHLPTHLVIDAGRTQIAAGSLTVLAIGPGPIDLINSITGHLKLL 231          
BLAST of Gcaud6964.t1 vs. uniprot
Match: UPI000F672264 (peptidyl-tRNA hydrolase 2, mitochondrial-like n=3 Tax=Penaeus TaxID=133894 RepID=UPI000F672264)

HSP 1 Score: 136 bits (342), Expect = 3.290e-37
Identity = 79/176 (44.89%), Postives = 105/176 (59.66%), Query Frame = 0
Query:    1 MLSDLSPRDGTTGAIGLATGFLLGFLTRHLLHRRLHQLPEYDSDDDTGF--VSGSYARSNEEHKLVLCVRTDLKMQKGKIAAQVGHATLGAYKAAARSTPAALRIWEHNAQPKIAVQIRSEREARSLQNHASRLALPTYMVYDAGRTQIAAGSMTVLAVGPGPVSLVNQVTGKLKL 174
            ++SDL  + G    +G+  G  +GF  R  L      + E D +D+ G     G  A  + E+KLVL VR+DLKM KGK+AAQ  HATL A+K + +S P  LR WE N QPK+ V++  E +   L   A  + L   ++ DAGRTQIA GS TVL VGPGP  L++Q+TG LKL
Sbjct:    4 IISDLLAQPGVM--VGMGLGVCIGFFMRGSLLGNGETVEEGDDEDNDGGWDEDGFLAEGSGEYKLVLVVRSDLKMGKGKVAAQCSHATLKAFKQSQKSCPKILRKWELNGQPKVVVKLDDESQMLDLAGLAREVGLTVSLIQDAGRTQIAPGSRTVLGVGPGPADLIDQITGHLKL 177          
BLAST of Gcaud6964.t1 vs. uniprot
Match: A0A0K6FPS5_9AGAM (Aminoacyl-tRNA hydrolase n=8 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A0K6FPS5_9AGAM)

HSP 1 Score: 134 bits (338), Expect = 8.870e-37
Identity = 77/117 (65.81%), Postives = 84/117 (71.79%), Query Frame = 0
Query:   59 EEHKLVLCVRTDLKMQKGKIAAQVGHATLGAYKAAARSTPAALRIWEHNAQPKIAVQIRSEREARSLQNHASRLALPTYMVYDAGRTQIAAGSMTVLAVGPGPVSLVNQVTGKLKLL 175
            EE KLVL VRTDL M KGKIAAQ GHATL  YKA + + PA LR WE   QPKIA++  SE E   LQ  A  L+L    + DAGRTQIAAGS TVL VGPGP SL+NQVTGKLKLL
Sbjct:   72 EECKLVLVVRTDLGMTKGKIAAQCGHATLACYKALSSANPALLRHWERFGQPKIALKCDSEEELLLLQATAQSLSLCARSIQDAGRTQIAAGSRTVLGVGPGPASLINQVTGKLKLL 188          
The following BLAST results are available for this feature:
BLAST of Gcaud6964.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3ISN2_9FLOR3.090e-7872.57Aminoacyl-tRNA hydrolase n=1 Tax=Gracilariopsis ch... [more]
R7QT15_CHOCR8.790e-6262.57Aminoacyl-tRNA hydrolase n=1 Tax=Chondrus crispus ... [more]
A0A7S1XF27_9RHOD2.340e-4456.13Aminoacyl-tRNA hydrolase n=1 Tax=Compsopogon caeru... [more]
A0A7S2ZHR8_9RHOD6.460e-4453.33Aminoacyl-tRNA hydrolase n=1 Tax=Rhodosorus marinu... [more]
A0A7S1TJX5_9RHOD1.530e-4164.66Aminoacyl-tRNA hydrolase n=1 Tax=Erythrolobus aust... [more]
A0A6T6PRY8_9RHOD2.430e-4149.70Aminoacyl-tRNA hydrolase n=1 Tax=Timspurckia oligo... [more]
A0A5J4Z8V8_PORPP1.100e-3964.91Aminoacyl-tRNA hydrolase n=1 Tax=Porphyridium purp... [more]
A0A7S2TJL3_9EUKA2.580e-3761.40Aminoacyl-tRNA hydrolase n=1 Tax=Lotharella oceani... [more]
UPI000F6722643.290e-3744.89peptidyl-tRNA hydrolase 2, mitochondrial-like n=3 ... [more]
A0A0K6FPS5_9AGAM8.870e-3765.81Aminoacyl-tRNA hydrolase n=8 Tax=Rhizoctonia solan... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002833Peptidyl-tRNA hydrolase, PTH2PFAMPF01981PTH2coord: 62..175
e-value: 4.9E-40
score: 136.5
IPR002833Peptidyl-tRNA hydrolase, PTH2TIGRFAMTIGR00283TIGR00283coord: 62..175
e-value: 1.8E-34
score: 116.5
IPR002833Peptidyl-tRNA hydrolase, PTH2PANTHERPTHR12649PEPTIDYL-TRNA HYDROLASE 2coord: 15..175
IPR002833Peptidyl-tRNA hydrolase, PTH2CDDcd02430PTH2coord: 61..175
e-value: 9.33487E-59
score: 177.33
IPR023476Peptidyl-tRNA hydrolase II domain superfamilyGENE3D3.40.1490.10Bit1coord: 56..175
e-value: 2.9E-44
score: 151.8
IPR023476Peptidyl-tRNA hydrolase II domain superfamilySUPERFAMILY102462Peptidyl-tRNA hydrolase IIcoord: 60..175
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..11
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..31
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 32..175
NoneNo IPR availableTMHMMTMhelixcoord: 10..32

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_99_length_51659_cov_4.484680contigNODE_99_length_51659_cov_4.484680:22781..23405 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud6964.t1Gcaud6964.t1Gracilaria caudata M_176_S67 malemRNANODE_99_length_51659_cov_4.484680 22781..23405 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud6964.t1 ID=Gcaud6964.t1|Name=Gcaud6964.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=176bp
MLSDLSPRDGTTGAIGLATGFLLGFLTRHLLHRRLHQLPEYDSDDDTGFV
SGSYARSNEEHKLVLCVRTDLKMQKGKIAAQVGHATLGAYKAAARSTPAA
LRIWEHNAQPKIAVQIRSEREARSLQNHASRLALPTYMVYDAGRTQIAAG
SMTVLAVGPGPVSLVNQVTGKLKLL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002833PTH2
IPR023476Pep_tRNA_hydro_II_dom_sf