Gcaud6942.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gcaud6942.t1
Unique Name	Gcaud6942.t1
Type	polypeptide
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	284

Homology

[Close]

BLAST of Gcaud6942.t1 vs. uniprot
Match: A0A2V3J5K3_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5K3_9FLOR)

HSP 1 Score: 261 bits (666), Expect = 2.100e-83
Identity = 160/282 (56.74%), Postives = 201/282 (71.28%), Query Frame = 0

Query:    1 MVTNVESSSPLDPAQQLPTMVAKQNSASXXXXXXXXXXXXXXXXXXXXXXXXXXX--SEA--QDDSLNPDTSAGDLERWRHRVQSLRSSLSQAQAEKRVLSADLKAATARANDAEQAETAVNKGLLTARSIISQRDRSIAELNAMVSNQRADFHRLEEEKKKLDRRVVLLKTVSANLQEAREERDAAERKLEESQCNATRLKRRLAHMQEVIEGHEKQLEVLELKEKQVDKLQCQLHDLREEKQFAEEQAVRRSVVAAGASAVGGVVVGLALSLLARTRDDQ 278
            MVT VE+ S L+P Q L    +  +S S                             SEA  Q+D ++ +T A  +E+W+HR QSLRSSL+Q Q E RVLS DLKAA ARANDAEQAE AVNKGLL+ARS+ISQRDRSIAELNAMVSNQRAD  RLE+EKKKLDRR++LLKTVSANLQEARE RDAAE++LEES  NA++L++++A  +E IE   K +E L++ +KQV+KL CQ+HDL +EK+ +E++A R  V+AA A AVGG VV LALSLL+R  D++
Sbjct:    1 MVTKVETVSILEPTQDLENNPSTPSSVSGSTKRKKKRRNGQSGNTPDLSSGSASPAPSEAPSQEDLVHSETPARTMEQWKHRAQSLRSSLNQVQNENRVLSTDLKAAVARANDAEQAEAAVNKGLLSARSVISQRDRSIAELNAMVSNQRADLRRLEDEKKKLDRRLILLKTVSANLQEAREGRDAAEKRLEESNSNASQLRKKVAKAEERIEALNKHVEALDMTKKQVEKLHCQIHDLHDEKELSEQKATRNVVLAASAGAVGGAVVTLALSLLSRPNDEK 282

The following BLAST results are available for this feature:

BLAST of Gcaud6942.t1 vs. uniprot

BLAST of Gcaud6942.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3J5K3_9FLOR	2.100e-83	56.74	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 166..245
None	No IPR available	COILS	Coil	Coil	coord: 135..162
None	No IPR available	COILS	Coil	Coil	coord: 72..113
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..76
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..66
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 273..283
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..250
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 251..272
None	No IPR available	TMHMM	TMhelix		coord: 250..272

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_134_length_45310_cov_4.791305	contig	NODE_134_length_45310_cov_4.791305:8330..9181 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud6942.t1	Gcaud6942.t1	Gracilaria caudata M_176_S67 male	mRNA	NODE_134_length_45310_cov_4.791305 8330..9181 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gcaud6942.t1 ID=Gcaud6942.t1|Name=Gcaud6942.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=284bp
MVTNVESSSPLDPAQQLPTMVAKQNSASAKKKKKRRNGMSGSNSENSSGS
ASPPPSEAQDDSLNPDTSAGDLERWRHRVQSLRSSLSQAQAEKRVLSADL
KAATARANDAEQAETAVNKGLLTARSIISQRDRSIAELNAMVSNQRADFH
RLEEEKKKLDRRVVLLKTVSANLQEAREERDAAERKLEESQCNATRLKRR
LAHMQEVIEGHEKQLEVLELKEKQVDKLQCQLHDLREEKQFAEEQAVRRS
VVAAGASAVGGVVVGLALSLLARTRDDQREETH*