Gcaud6871.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud6871.t1
Unique NameGcaud6871.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length1158
Homology
BLAST of Gcaud6871.t1 vs. uniprot
Match: A0A2J8AIV3_9CHLO (DUF4470 domain-containing protein (Fragment) n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J8AIV3_9CHLO)

HSP 1 Score: 139 bits (349), Expect = 2.010e-29
Identity = 257/926 (27.75%), Postives = 363/926 (39.20%), Query Frame = 0
Query:   54 AAQHAQEAITLNPQNIKAHYRLAAAYAAMPFPPQDIDASRRCCDIAMANARAFALMKATSSSKPLPNVVGLEVVSRHMHPISARAAD----LLRYVSESKVVLVKS----MQDIVR--CSGVVAVVVSICQVSDHDFP--------PPAHIVGLDGSALINT-----FFGPHALFLEQGD-LSAWGLRFAGAYR-AMICTLGD---LALIDCTISEHDEHGILVAERTGAVLAAFCTLNKCNTGIEVREGASATIVRSTIRNMFRKGIAAYGGARSVVLEETLVENVRIEGLQCLGP-----------RSIEGFDPFRIDELRPQLQGTPFETAVADAVAASAREDVNSAKLAVTLRNCHVRRCGSDYSQMIRSGVTIDQGASATIQGCLFTGCGMASVYLKGGCDVFISHCRVNHGNAGD--------------AGVQVDVNYEGNVTIEHSAFVGKTARAIVELARSLQ--PRQRAMMRAVTGARSALVNKHM---IKTVLRARNA-----------PTIESLRKDLVDAEVCSDQATGSDSI--PLPNVKIPGGAGALYR-------LLGKQ--NVA------TA---YPIGNTYGKDVLRC-----ADTKNVKKGEAFVVLAACGDIRNVVETI------CGLEGKLLKEVSFLLNDISISILARNIVLLELAFRLWPGHAASAAQDRKRAPGRKRAARIWLHAWGSIALTQGDHSALHRVLADLSEGRLPKWLSPP---------------------SANVRNALISCWSEWASCKRTLKEVRTERDALAS-----LAAGHKNAAAMHAALAAGLKETESSALLNNAELLNGGGEK--------VNPT-LLASGLHYNMY-ESSIFRAIDMRSFVKGDVTQLHAAACEVMNQKGPIVSRALRSGLVRFEVQPGDLTCVLAS 843
            AA   +  + L P N KAHYRLA A      PP   DA       A     A A ++    + PL  +     V R      A AA     LLR  ++ ++V   S    +   VR  C+ VV     +C    HD          PP  ++GL GS  ++      F   HA+++  G  ++   +R  G  R A  C  G    L ++ C + ++ E G+LVA   GA L     +      IEVREG      R  I    R+G++AYGGARSV+L  +++     EG+   G              + G  P R +  R          A  +   A  R+   S  L V L  C +  C        + GV+ D GAS   +GC        S ++KGG D  I  C+V +  A                +GV V VNY G+V +  +AF G+   A +E  +  +  P+  A      G  +  + K M    K V   RN+           P++ESL + L  A +  +QAT +++          PGG  A  R       LL +   NVA      TA   Y IGNT G DV        AD   ++   A V+L ACGDIRN++ T        G  G     ++F LND ++S+LARN VLL +A        AS   D              L  W   AL+      L R L  L+    P WL+                        A +R  L +    WA C  ++ +V  +RDA+         A   + A + A+L AG  E     +   AE +  G  +         NPT LL   L Y +Y  SSIFRA+ +     G      A     +  +   V RALR G     + PGD+   + S
Sbjct:    4 AAADCRACLQLQPCNAKAHYRLARA-----LPPDHEDA-------AAXXXXAVAFIEPADRTPPL--LQRYAEVQRATAAAEAEAARRGVLLLRLPADPRLVAAASSWAQLGAAVRRGCTLVV-----LCP-GAHDTTSQVGSARGPPLTVLGL-GSVELHPPGPAGFKASHAVWVSGGAAVTLANVRLVGGGRGAAACVDGPGSRLHMVGCRVEDYGEVGLLVAGG-GARLDRCSFVRTKAQAIEVREGGELEANRLAITEC-RQGVSAYGGARSVLLRNSVILRSAQEGVLLAGTFTNAATDAQDDAGLNGRGPMRSESAR----------AATEQAHAWGRQQGTS--LQVQLLGCTIAHCR-------QFGVSADSGASLVARGCRLELNDPYSFFIKGGTDARILGCQVVYSGAPSKCAWRGFHTLAPKQSGVVVGVNYGGSVDLIGNAFGGREDLAYIEEIKQAKHLPKAGAKGGREAGPMAQALAKRMGLWSKPVAAERNSHHEPGGGAAGLPSLESLAQRL-PAWLLGEQATEAEAQVEAEAGAAAPGGGTAQLRRWKPAPALLQRTCLNVAHFAWAPTAHEFYAIGNTLGVDVSGGRLGVGADAGGLRA--ARVLLGACGDIRNLLPTAHAAAAAAGPGGP--TRLAFTLNDGNLSMLARNAVLLHMAAD------ASVPPDAV------------LAVWACHALSAPHAELLGRSLRALASEPWPAWLAAAPGLEGATAGAXXXXXXXXXEAEAGLRGVLRA----WAGCGLSVADVLAQRDAMQGGLPIRAQAVELSMAGVRASLGAGGAEQLRGEV---AEYVRRGSLRPEEAALSATNPTFLLGRELQYTVYFSSSIFRAVPL-----GPGGTARARLLSTLGPQLEAVGRALRGGAATVTLVPGDILAAMTS 852          
BLAST of Gcaud6871.t1 vs. uniprot
Match: A0A0D2LRY3_9CHLO (Uncharacterized protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2LRY3_9CHLO)

HSP 1 Score: 92.4 bits (228), Expect = 1.410e-15
Identity = 130/496 (26.21%), Postives = 194/496 (39.11%), Query Frame = 0
Query:    7 DLFRQCKYRDAERAFLDAAENAQTSE-DRSLQLSNASQCVLNLSLFERAAQHAQEAITLNPQNIKAHYRLAAAYAAMPFPPQDIDASRRCCDIAMA------NARAFALMKATSSSKPLPNVVGLEVVSRHMHPISAR----AADLLRYVSESKVVLVKSMQDIVRCSGVVAVVVSICQVSDHDFPP---PAHIVGLDGSALINTFFGPHAL--FLEQGDLSAWGLRFAGAYRAMI-CTLG---DLALIDCTISEHDEHGILVAERTGAVLAAFCTLNKCNTGIEVREGASATIVRSTIRNMFRKGIAAYGGARSVVLEETLVENVRIEGLQCLGPRSIEGFDPFRIDELRPQLQGTPFETAVADAVAASAREDVNSAKLAVTLR----NCHVRRCGSDYSQMIRSGVTIDQGASATIQGCLFTGCGMASVYLKGGC-------DVFISHCRVNHGN------AGDAGVQVDVNYEGNVTIEHSAFVGKTARAIVE 465
            +LF   +Y DA  A+     +A   + +R   LSN +   L L     AA  A+ A+ L P N KAH RLA A      P  D+  +      A+A      +A   +L  A   +                          AA L      + V L  + ++    +   A +V + Q   ++      P  ++GL G+ L +   G H +     +  L    +R  G  RA   C  G    L+LI CT++  D+ G+LV     A L      N     IEVREG   +  R T+ +  + G+AA GGARSVVL E  +   R EGL   G  +    +   +  L  + Q  P   A A     SA+   +  +L   L      C +   G         G++ D GA+ T+ GC        SV++KGG         +  S  + +H +         +G +V VNY G V +   AF G    A+ E
Sbjct:   21 ELFVAGRYADAAAAYSAGLADAGIRDVERGTLLSNRAAAYLKLGDAPAAAADARAALRLQPCNAKAHARLARA-----LPRGDVLEAPAAVAAAVALLGPHLDAELVSLYAAVRDAXXXXXXXXXXXXXXXXXXXXXXXXXXAAVLPLPRDPAAVALASTWREAAAAAAAGAELV-VLQPGVYETALGYIPCSVLGLGGAELRSA--GSHVIQHAAARRRLVIANMRLGGTGRAAAACVWGAGAQLSLIGCTVAGRDDVGVLVTLGGIAALEGCKISNTSKQAIEVREGGRLSAARVTVEDCMQ-GVAAAGGARSVVLRECSILRSRFEGLMLQGTYTNAVSEAQAV--LLQRQQQAPLSEADAHGHLVSAQAQASGRRLGTPLDAALFGCTIAGSGG-------FGISADMGANVTLAGCRLELNSPISVFIKGGXXXXXXXXQIIYSGAKPSHPSQFAPPGTRQSGARVAVNYAGAVVVAGCAFAGPPGLAVHE 498          
BLAST of Gcaud6871.t1 vs. uniprot
Match: A0A812TWK0_9DINO (Hypothetical protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812TWK0_9DINO)

HSP 1 Score: 87.0 bits (214), Expect = 1.350e-13
Identity = 139/533 (26.08%), Postives = 218/533 (40.90%), Query Frame = 0
Query:  385 MIRSGVTIDQGASATIQGCLFTGCGMASVYLKGGCDVFISHCRVNHGNAGD----AG--------VQVDVNYEGNVTIEHSAFVG--KTARAIVELARSLQPRQRAMMRAVTGARSALVNKHMIKTVLRARNAPTIESLRKDLVDA---EVCSDQATGSDSIPLPNVKIPGGAGALYRLLGKQNVATA---YPIGNTYGKDVLRCA--DTKNVKKGEAFVVLAACGDIRNVVETICGLEGKLLKEVSFLLNDISISILARNIVLLELAFRLWPGHAASAAQDRKRAPGRKRAARIWLHAWGSIALTQGDHSALHRVLADL-SEGRLPKWLSPPSANVRNALISCWSEWASCKRTLK------------EVRTERD-ALASLAAGHKNAAAMHAALAAGLKETESSALLNNAELLNGGGEKVNPTLL-ASGLHYNMYES-SIFRAIDMRSFVKGDVTQLHAAACEVMNQKGPIVSRALRSGLVRFEVQPGDLTCVL---ASQREVDAVEMSNALDYISKPACLISAARCLTRPG 876
            M   GV++  GA+ ++  C        S ++K G +  +S   V +         AG        V +  NY G V +  +AF+G    A A+ E  R L    +++    + A     N+H  K    +   P++E+L   L  A    V   +      +PL   + P      Y +       T+   Y IGNT+G  V R    +  NV      V+LAACGDIRN++ T+          + F LND + S+LARN+ LL+L         A  A D              L  W +  LT      L   L  L S+   P W+S  ++     L   ++EW + +                ++ T  + +  + AAG K +A     +A+ +K T S   L   +        VNPTLL A GL Y +Y S SIFRA+ +     G  T       + +  +     +A+    V    + GD+  V+   AS+++ D ++ SN  DY+S  A L +++R L   G
Sbjct:   99 MASFGVSVGMGANVSVHQCKCINNDPVSFFVKDGSNFTLSASLVYYTRQRSRCTWAGGWTHPTNAVNIGTNYGGEVRLLQNAFIGPGSMAEAMHEDFRILPQHMKSLGMWSSPAYQE-GNEHFTKD---SAEVPSLEALAARLPKACRPTVVDVKRRDETRMPLLAHQRP-----CYTVADAHWSPTSSQYYAIGNTFGFSVARDIPKEVSNVS-----VLLAACGDIRNLLATVSACPA---TSLHFTLNDGNKSMLARNLTLLQLI--------AQGAADEDV-----------LAVWANHCLTTHQRDVLLDALKALESKSSHPPWISHDAS-----LQGVFTEWMTAQEVFSADELLRKRQPGLDISTSEELSCTAAAAGGKLSARARREIASYIK-TGSLPDLAACQGSEDARACVNPTLLLAPGLQYTVYFSTSIFRAVPLA----GTATSAVEGLLDTLKPQFESFRQAVEEHRVFVRTEAGDVLGVMQSYASKQQFDFIDTSNVADYVSMAAILHASSRVLKPQG 585          
BLAST of Gcaud6871.t1 vs. uniprot
Match: A8JAA0_CHLRE (Predicted protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8JAA0_CHLRE)

HSP 1 Score: 79.7 bits (195), Expect = 3.300e-11
Identity = 75/296 (25.34%), Postives = 122/296 (41.22%), Query Frame = 0
Query:  202 HALFLEQGD--LSAWGLRFAGAYRAMICTLGDLALID-----------------CTISEHDEHGILVAERTGAVLAAFCTLNKCNTGIEVREGASATIVRSTIRNMFRKGIAAYGGARSVVLEETLVENVRIEGLQCLGPRSIEGFDPFRIDELRPQLQGTPFETAVADAVAASAREDVNS--AKLAVTLRNCHVRRCGSDYSQMIRSGVTIDQGASATIQGCLFTGCGMASVYLKGGCDVFISHCRVNHGNA-------------------GDAGVQVDVNYEGNVTIEHSAFVG 457
            HAL++ +    ++  G+R  G  RA +C     A +                  C + ++DE G+LV     A L            +EVREG S    R  I +  R+G++AYGGAR +VL ++L+     EGL   G  S       +++ L    +  P+ T +   +  +A E      ++L+  +  C V  CG       + GV+ D G    ++ C   G     +++KG  DV +  C++++  A                      GV+V VNY   V +E  AF G
Sbjct:  253 HALWVTEDHPPVTLVGMRLVGGGRAAVCLSAPEAAVQAAAASEVEPEPQLTMSWCRVVDYDEVGVLVVGPVAARLDRCVFARNAKQAVEVREGGSLAGHRLAIADC-RQGVSAYGGARRLVLTDSLILRALSEGLLLAGGHS-NAATAAQLEMLGGD-KPPPWATGLGADIFRTADEQAKELGSRLSARVEGCVVAGCG-------QFGVSADSGTQLLLRRCRLLGNDPIQLFIKGCSDVTVLCCQLSYSGAMSRCEWYSRTGLPSSSPMRRQCGVRVGVNYGAWVRLEGCAFAG 538          
The following BLAST results are available for this feature:
BLAST of Gcaud6871.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2J8AIV3_9CHLO2.010e-2927.75DUF4470 domain-containing protein (Fragment) n=1 T... [more]
A0A0D2LRY3_9CHLO1.410e-1526.21Uncharacterized protein n=1 Tax=Monoraphidium negl... [more]
A0A812TWK0_9DINO1.350e-1326.08Hypothetical protein n=1 Tax=Symbiodinium natans T... [more]
A8JAA0_CHLRE3.300e-1125.34Predicted protein n=1 Tax=Chlamydomonas reinhardti... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006626Parallel beta-helix repeatSMARTSM00710pbh1coord: 365..394
e-value: 1800.0
score: 5.4
coord: 275..297
e-value: 1600.0
score: 5.7
coord: 418..442
e-value: 1200.0
score: 6.5
coord: 229..251
e-value: 2000.0
score: 5.0
coord: 395..417
e-value: 600.0
score: 8.8
IPR027974Domain of unknown function DUF4470PFAMPF14737DUF4470coord: 557..665
e-value: 1.3E-12
score: 47.7
IPR012334Pectin lyase foldGENE3D2.160.20.10coord: 339..467
e-value: 2.2E-8
score: 35.6
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 3..110
e-value: 4.8E-12
score: 47.9
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 5..107
IPR039448Right handed beta helix domainPFAMPF13229Beta_helixcoord: 368..456
e-value: 1.6E-7
score: 31.3
IPR011050Pectin lyase fold/virulence factorSUPERFAMILY51126Pectin lyase-likecoord: 236..454

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_37_length_70757_cov_4.492641contigNODE_37_length_70757_cov_4.492641:32395..35868 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud6871.t1Gcaud6871.t1Gracilaria caudata M_176_S67 malemRNANODE_37_length_70757_cov_4.492641 32395..35868 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud6871.t1 ID=Gcaud6871.t1|Name=Gcaud6871.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=1158bp
MTTPAKDLFRQCKYRDAERAFLDAAENAQTSEDRSLQLSNASQCVLNLSL
FERAAQHAQEAITLNPQNIKAHYRLAAAYAAMPFPPQDIDASRRCCDIAM
ANARAFALMKATSSSKPLPNVVGLEVVSRHMHPISARAADLLRYVSESKV
VLVKSMQDIVRCSGVVAVVVSICQVSDHDFPPPAHIVGLDGSALINTFFG
PHALFLEQGDLSAWGLRFAGAYRAMICTLGDLALIDCTISEHDEHGILVA
ERTGAVLAAFCTLNKCNTGIEVREGASATIVRSTIRNMFRKGIAAYGGAR
SVVLEETLVENVRIEGLQCLGPRSIEGFDPFRIDELRPQLQGTPFETAVA
DAVAASAREDVNSAKLAVTLRNCHVRRCGSDYSQMIRSGVTIDQGASATI
QGCLFTGCGMASVYLKGGCDVFISHCRVNHGNAGDAGVQVDVNYEGNVTI
EHSAFVGKTARAIVELARSLQPRQRAMMRAVTGARSALVNKHMIKTVLRA
RNAPTIESLRKDLVDAEVCSDQATGSDSIPLPNVKIPGGAGALYRLLGKQ
NVATAYPIGNTYGKDVLRCADTKNVKKGEAFVVLAACGDIRNVVETICGL
EGKLLKEVSFLLNDISISILARNIVLLELAFRLWPGHAASAAQDRKRAPG
RKRAARIWLHAWGSIALTQGDHSALHRVLADLSEGRLPKWLSPPSANVRN
ALISCWSEWASCKRTLKEVRTERDALASLAAGHKNAAAMHAALAAGLKET
ESSALLNNAELLNGGGEKVNPTLLASGLHYNMYESSIFRAIDMRSFVKGD
VTQLHAAACEVMNQKGPIVSRALRSGLVRFEVQPGDLTCVLASQREVDAV
EMSNALDYISKPACLISAARCLTRPGGLLSMHTMMVRNLERNEQNLPDDL
NEHFLRGANWEELANVLGLRALQVDGDATGSYGDGINARSRWIYEAKNYE
SFETANSKKLRVSMVNAAKVWCRGPDPARRSWSNEVQIAAWPSAVAALHI
VAAATSLQPGDVVKEMCNASPTIAQFELELNAHAAIMDGKEADLILATLV
LHGLHINPVIGMHLHQLLQLGLNLGEDNEETVWLFDVFEFSPSRGVCEVI
VRRDDVSRMRSLRAQLCQVQMSNGVLKGVAQSATCLTLKTRELSDSETAT
MRKTFLL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006626PbH1
IPR027974DUF4470
IPR012334Pectin_lyas_fold
IPR011990TPR-like_helical_dom_sf
IPR039448Beta_helix
IPR011050Pectin_lyase_fold/virulence