Gcaud6641.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud6641.t1
Unique NameGcaud6641.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length83
Homology
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BLAST of Gcaud6641.t1 vs. uniprot
Match: A0A2V3IW95_9FLOR (Endoplasmic reticulum transmembrane protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IW95_9FLOR)

HSP 1 Score: 106 bits (264), Expect = 2.380e-27
Identity = 58/79 (73.42%), Postives = 67/79 (84.81%), Query Frame = 0 
Query:    4 MYLAGFSLTLMFVIARIVELMQEVVNVEEQKDTAEQRLKDVNDVASTATSIPTTDITRKEEASTLRKRANVTTNTDKTD 82
            +YLAGF+LTLMFVIARIVELMQEVVNVEEQK+  EQRLKDV ++AST TS+P TDIT KEE++TLRKR    +N DK D
Sbjct:   90 LYLAGFALTLMFVIARIVELMQEVVNVEEQKEVVEQRLKDVGEIASTTTSVPATDITSKEESTTLRKRTPAASNADKHD 168
The following BLAST results are available for this feature:
BLAST of Gcaud6641.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IW95_9FLOR2.380e-2773.42Endoplasmic reticulum transmembrane protein n=1 Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 20..47
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 62..82
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 61..82
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 19..82
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..14
IPR040463BAP29/BAP31, transmembrane domainPFAMPF05529Bap31coord: 4..35
e-value: 4.6E-6
score: 26.5

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_210_length_36927_cov_4.858752contigNODE_210_length_36927_cov_4.858752:35100..35463 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud6641.t1Gcaud6641.t1Gracilaria caudata M_176_S67 malemRNANODE_210_length_36927_cov_4.858752 35100..35463 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud6641.t1 ID=Gcaud6641.t1|Name=Gcaud6641.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=83bp
MTQMYLAGFSLTLMFVIARIVELMQEVVNVEEQKDTAEQRLKDVNDVAST
ATSIPTTDITRKEEASTLRKRANVTTNTDKTD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR040463BAP29/BAP31_N