Gcaud6640.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud6640.t1
Unique NameGcaud6640.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length314
Homology
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BLAST of Gcaud6640.t1 vs. uniprot
Match: A0A2V3IW38_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IW38_9FLOR)

HSP 1 Score: 327 bits (837), Expect = 9.290e-109
Identity = 159/255 (62.35%), Postives = 192/255 (75.29%), Query Frame = 0 
Query:   57 ERREPPSYLPLAQHLRYLK--PRKPTLQDMAYGSHQASLHDLKQTDISDMDKCDVCVGNANRVSNSRIPSLPEADLARMLVKLISFHGIKSMVTFPCAAETLWIFTFVETMKKIYPSFIHYCGIESDQVVVGMMKFYNQSDLGETEFIVYSPSSRGSLPQVDLMFTWKGLEHFSFDTLLALFKHVEETRIQYTIIKNNPGVENAVMVENARETYSILRSGIQSLNFRGFPFGFGEAERVIPLHGSQLLFYNTTEL 309
            ERR PP YLPLAQHL++L+  PR+ +LQDM YG H++S  DLK+T  SD+  C  C  N NR S S I S    DLAR+LVKLISFH IKSM+TFPCA ETLWIFTFVE MK I P+F HYC IES + VVGMMK Y++S LG TEF VYSP   GSLP  DLMF+W+GLE ++FD++  LFK  E + + YTI+KN PG+ENA+MV+N RETYS++RS   +LNFRG+PFG G A+RVI  HGSQLL YNTT +
Sbjct:   34 ERRAPPPYLPLAQHLKFLESNPRRTSLQDMDYGPHRSSKTDLKETGTSDLKDCSTCGANENRASLSNIHSRKYKDLARLLVKLISFHNIKSMITFPCATETLWIFTFVEAMKGINPNFKHYCVIESYEFVVGMMKTYDRSYLGNTEFAVYSPKGHGSLPMADLMFSWEGLETWTFDSIFTLFKDAELSSVTYTILKNTPGIENAMMVDNGRETYSVVRSSSHALNFRGYPFGLGRAKRVISFHGSQLLMYNTTNM 288
The following BLAST results are available for this feature:
BLAST of Gcaud6640.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IW38_9FLOR9.290e-10962.35Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 26..313
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 6..25
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..5
NoneNo IPR availableTMHMMTMhelixcoord: 10..27

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_210_length_36927_cov_4.858752contigNODE_210_length_36927_cov_4.858752:32946..33969 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud6640.t1Gcaud6640.t1Gracilaria caudata M_176_S67 malemRNANODE_210_length_36927_cov_4.858752 32946..33969 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud6640.t1 ID=Gcaud6640.t1|Name=Gcaud6640.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=314bp
MITYFSGQDVSFVLVLTFILIFVHLQNRILKSATSSQAFSPVTSRKHDGF
NLSRRVERREPPSYLPLAQHLRYLKPRKPTLQDMAYGSHQASLHDLKQTD
ISDMDKCDVCVGNANRVSNSRIPSLPEADLARMLVKLISFHGIKSMVTFP
CAAETLWIFTFVETMKKIYPSFIHYCGIESDQVVVGMMKFYNQSDLGETE
FIVYSPSSRGSLPQVDLMFTWKGLEHFSFDTLLALFKHVEETRIQYTIIK
NNPGVENAVMVENARETYSILRSGIQSLNFRGFPFGFGEAERVIPLHGSQ
LLFYNTTELRDKW*
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