Gcaud3389.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud3389.t1
Unique NameGcaud3389.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length78
Homology
BLAST of Gcaud3389.t1 vs. uniprot
Match: A0A2V3IX01_9FLOR (Cyclin-dependent kinases regulatory subunit n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IX01_9FLOR)

HSP 1 Score: 166 bits (419), Expect = 3.360e-52
Identity = 74/77 (96.10%), Postives = 76/77 (98.70%), Query Frame = 0
Query:    1 MPTHQIQYSDKYYDDVYEYRHVILPADIAKHVPKNRLLAENEWRSIGVQQSRGWVHYAIHRPEPHILLFRRPKDGKY 77
            MP+HQIQYSDKYYDDVYEYRHVILPADIAKHVPK+RLL ENEWRSIGVQQSRGWVHYAIHRPEPHILLFRRPKDGKY
Sbjct:    1 MPSHQIQYSDKYYDDVYEYRHVILPADIAKHVPKDRLLLENEWRSIGVQQSRGWVHYAIHRPEPHILLFRRPKDGKY 77          
BLAST of Gcaud3389.t1 vs. uniprot
Match: R7QAJ8_CHOCR (Cyclin-dependent kinases regulatory subunit (Fragment) n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QAJ8_CHOCR)

HSP 1 Score: 150 bits (379), Expect = 7.100e-46
Identity = 66/77 (85.71%), Postives = 72/77 (93.51%), Query Frame = 0
Query:    1 MPTHQIQYSDKYYDDVYEYRHVILPADIAKHVPKNRLLAENEWRSIGVQQSRGWVHYAIHRPEPHILLFRRPKDGKY 77
            MP  QIQYS+KYYDDVYE+RHVILP DIAKH+PKNRLL+ENEWR+IGVQQSRGWVHYAIHRPEPHILLFRR K+G Y
Sbjct:   18 MPVPQIQYSEKYYDDVYEFRHVILPVDIAKHLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHILLFRREKNGNY 94          
BLAST of Gcaud3389.t1 vs. uniprot
Match: A0A2V0NV22_9CHLO (Cyclin-dependent kinases regulatory subunit n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NV22_9CHLO)

HSP 1 Score: 140 bits (353), Expect = 6.370e-42
Identity = 60/73 (82.19%), Postives = 67/73 (91.78%), Query Frame = 0
Query:    1 MPTHQIQYSDKYYDDVYEYRHVILPADIAKHVPKNRLLAENEWRSIGVQQSRGWVHYAIHRPEPHILLFRRPK 73
            M  H IQYS+KYYDDVYEYRHV+LP +IA H+PKNRLL ENEWR++GVQQSRGWVHYAIHRPEPHI+LFRRPK
Sbjct:    1 MAQHSIQYSEKYYDDVYEYRHVVLPPEIANHLPKNRLLDENEWRALGVQQSRGWVHYAIHRPEPHIMLFRRPK 73          
BLAST of Gcaud3389.t1 vs. uniprot
Match: UPI00053A2B0C (cyclin-dependent kinases regulatory subunit 2 n=1 Tax=Camelina sativa TaxID=90675 RepID=UPI00053A2B0C)

HSP 1 Score: 137 bits (345), Expect = 8.350e-41
Identity = 57/68 (83.82%), Postives = 67/68 (98.53%), Query Frame = 0
Query:    5 QIQYSDKYYDDVYEYRHVILPADIAKHVPKNRLLAENEWRSIGVQQSRGWVHYAIHRPEPHILLFRRP 72
            QIQYSDKY+DD+YEYRHV+LP ++AKH+PKNR+LAE+EWR+IGVQQSRGWVHYAIHRPEPHI+LFRRP
Sbjct:    3 QIQYSDKYFDDIYEYRHVVLPPEVAKHLPKNRILAESEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRP 70          
BLAST of Gcaud3389.t1 vs. uniprot
Match: M1V9Y3_CYAM1 (Cyclin-dependent kinases regulatory subunit n=2 Tax=cellular organisms TaxID=131567 RepID=M1V9Y3_CYAM1)

HSP 1 Score: 136 bits (343), Expect = 2.560e-40
Identity = 60/72 (83.33%), Postives = 66/72 (91.67%), Query Frame = 0
Query:    1 MPTHQIQYSDKYYDDVYEYRHVILPADIAKHVPKNRLLAENEWRSIGVQQSRGWVHYAIHRPEPHILLFRRP 72
            MP  QIQYS+KYYDD YEYRHVILP DIA+ +PKN+LL+E EWRS+GVQQSRGWVHYAIHRPEPHILLFRRP
Sbjct:    1 MPAQQIQYSEKYYDDTYEYRHVILPPDIARLLPKNKLLSEAEWRSLGVQQSRGWVHYAIHRPEPHILLFRRP 72          
BLAST of Gcaud3389.t1 vs. uniprot
Match: A0A383V2I5_TETOB (Cyclin-dependent kinases regulatory subunit n=2 Tax=Scenedesmaceae TaxID=3086 RepID=A0A383V2I5_TETOB)

HSP 1 Score: 135 bits (341), Expect = 4.190e-40
Identity = 57/73 (78.08%), Postives = 67/73 (91.78%), Query Frame = 0
Query:    1 MPTHQIQYSDKYYDDVYEYRHVILPADIAKHVPKNRLLAENEWRSIGVQQSRGWVHYAIHRPEPHILLFRRPK 73
            M  + IQYS+KYYDD+YEYRHV+LP +IA+H+PKNRLL+ENEWR +GVQQSRGW HYAIHRPEPHI+LFRRPK
Sbjct:    1 MAHNNIQYSEKYYDDIYEYRHVVLPPEIAQHLPKNRLLSENEWRGLGVQQSRGWEHYAIHRPEPHIMLFRRPK 73          
BLAST of Gcaud3389.t1 vs. uniprot
Match: F8SUI5_MALDO (Cyclin-dependent kinases regulatory subunit n=4 Tax=Mesangiospermae TaxID=1437183 RepID=F8SUI5_MALDO)

HSP 1 Score: 134 bits (338), Expect = 1.070e-39
Identity = 57/68 (83.82%), Postives = 66/68 (97.06%), Query Frame = 0
Query:    5 QIQYSDKYYDDVYEYRHVILPADIAKHVPKNRLLAENEWRSIGVQQSRGWVHYAIHRPEPHILLFRRP 72
            QIQYS+KY+DD+YEYRHV+LP D+AK +PKNRLL+ENEWR+IGVQQSRGWVHYAIHRPEPHI+LFRRP
Sbjct:    3 QIQYSEKYFDDIYEYRHVVLPQDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRP 70          
BLAST of Gcaud3389.t1 vs. uniprot
Match: I0YZ04_COCSC (Cyclin-dependent kinases regulatory subunit n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YZ04_COCSC)

HSP 1 Score: 134 bits (336), Expect = 2.990e-39
Identity = 57/72 (79.17%), Postives = 66/72 (91.67%), Query Frame = 0
Query:    1 MPTHQIQYSDKYYDDVYEYRHVILPADIAKHVPKNRLLAENEWRSIGVQQSRGWVHYAIHRPEPHILLFRRP 72
            MP +QIQYS+KYYD++YEYRHV+LP D+AK +PK  LL+ENEWR IGVQQSRGWVHYAIHRPEPHI+LFRRP
Sbjct:    1 MPANQIQYSEKYYDEIYEYRHVVLPQDLAKLLPKGVLLSENEWRQIGVQQSRGWVHYAIHRPEPHIMLFRRP 72          
BLAST of Gcaud3389.t1 vs. uniprot
Match: A0A7J0H424_9ERIC (Cyclin-dependent kinases regulatory subunit n=6 Tax=Mesangiospermae TaxID=1437183 RepID=A0A7J0H424_9ERIC)

HSP 1 Score: 133 bits (334), Expect = 3.540e-39
Identity = 56/68 (82.35%), Postives = 66/68 (97.06%), Query Frame = 0
Query:    5 QIQYSDKYYDDVYEYRHVILPADIAKHVPKNRLLAENEWRSIGVQQSRGWVHYAIHRPEPHILLFRRP 72
            QIQYS+KY+DD+YEYRHV+LP ++AK +PKNRLL+ENEWR+IGVQQSRGWVHYAIHRPEPHI+LFRRP
Sbjct:    3 QIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRP 70          
BLAST of Gcaud3389.t1 vs. uniprot
Match: M5W5V7_PRUPE (Cyclin-dependent kinases regulatory subunit n=21 Tax=Mesangiospermae TaxID=1437183 RepID=M5W5V7_PRUPE)

HSP 1 Score: 133 bits (334), Expect = 4.220e-39
Identity = 56/68 (82.35%), Postives = 66/68 (97.06%), Query Frame = 0
Query:    5 QIQYSDKYYDDVYEYRHVILPADIAKHVPKNRLLAENEWRSIGVQQSRGWVHYAIHRPEPHILLFRRP 72
            QIQYS+KY+DD+YEYRHV+LP ++AK +PKNRLL+ENEWR+IGVQQSRGWVHYAIHRPEPHI+LFRRP
Sbjct:    3 QIQYSEKYFDDIYEYRHVVLPQEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRP 70          
The following BLAST results are available for this feature:
BLAST of Gcaud3389.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IX01_9FLOR3.360e-5296.10Cyclin-dependent kinases regulatory subunit n=1 Ta... [more]
R7QAJ8_CHOCR7.100e-4685.71Cyclin-dependent kinases regulatory subunit (Fragm... [more]
A0A2V0NV22_9CHLO6.370e-4282.19Cyclin-dependent kinases regulatory subunit n=1 Ta... [more]
UPI00053A2B0C8.350e-4183.82cyclin-dependent kinases regulatory subunit 2 n=1 ... [more]
M1V9Y3_CYAM12.560e-4083.33Cyclin-dependent kinases regulatory subunit n=2 Ta... [more]
A0A383V2I5_TETOB4.190e-4078.08Cyclin-dependent kinases regulatory subunit n=2 Ta... [more]
F8SUI5_MALDO1.070e-3983.82Cyclin-dependent kinases regulatory subunit n=4 Ta... [more]
I0YZ04_COCSC2.990e-3979.17Cyclin-dependent kinases regulatory subunit n=1 Ta... [more]
A0A7J0H424_9ERIC3.540e-3982.35Cyclin-dependent kinases regulatory subunit n=6 Ta... [more]
M5W5V7_PRUPE4.220e-3982.35Cyclin-dependent kinases regulatory subunit n=21 T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000789Cyclin-dependent kinase, regulatory subunitPRINTSPR00296CYCLINKINASEcoord: 42..56
score: 76.92
coord: 57..71
score: 82.05
coord: 5..19
score: 66.15
coord: 20..34
score: 62.05
IPR000789Cyclin-dependent kinase, regulatory subunitSMARTSM01084CKS_2coord: 5..74
e-value: 6.1E-47
score: 171.9
IPR000789Cyclin-dependent kinase, regulatory subunitPFAMPF01111CKScoord: 6..73
e-value: 2.7E-37
score: 126.8
IPR000789Cyclin-dependent kinase, regulatory subunitPROSITEPS00945CKS_2coord: 60..70
IPR036858Cyclin-dependent kinase, regulatory subunit superfamilyGENE3D3.30.170.10coord: 1..76
e-value: 2.1E-39
score: 135.3
IPR036858Cyclin-dependent kinase, regulatory subunit superfamilySUPERFAMILY55637Cell cycle regulatory proteinscoord: 3..75
NoneNo IPR availablePANTHERPTHR23415CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7coord: 1..74
NoneNo IPR availablePANTHERPTHR23415:SF29CYCLIN-DEPENDENT KINASES REGULATORY SUBUNITcoord: 1..74

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_100_length_51433_cov_4.606891contigNODE_100_length_51433_cov_4.606891:20336..20678 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3389.t1Gcaud3389.t1Gracilaria caudata M_176_S67 malemRNANODE_100_length_51433_cov_4.606891 20336..20678 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud3389.t1 ID=Gcaud3389.t1|Name=Gcaud3389.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=78bp
MPTHQIQYSDKYYDDVYEYRHVILPADIAKHVPKNRLLAENEWRSIGVQQ
SRGWVHYAIHRPEPHILLFRRPKDGKY*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000789Cyclin-dep_kinase_reg-sub
IPR036858Cyclin-dep_kinase_reg-sub_sf