Gcaud2936.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2936.t1
Unique NameGcaud2936.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length280
Homology
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BLAST of Gcaud2936.t1 vs. uniprot
Match: A0A2V3IPI7_9FLOR (Protein BREAST CANCER SUSCEPTIBILITY 2-like n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPI7_9FLOR)

HSP 1 Score: 74.3 bits (181), Expect = 3.020e-11
Identity = 39/60 (65.00%), Postives = 45/60 (75.00%), Query Frame = 0 
Query:  220 RPASCVSSEAWTRMAYSLAVYKLLALQSASCHTSHSHFFCAANVVREFLRRLCVEWHQSK 279
            +PASCV S AW RM Y+LAV+KL  LQ AS +T  S  FC ANV+REFLRRL VEWH +K
Sbjct:  568 KPASCVGSTAWARMVYALAVHKLTTLQ-ASTNTETS--FCVANVIREFLRRLSVEWHHNK 624
The following BLAST results are available for this feature:
BLAST of Gcaud2936.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IPI7_9FLOR3.020e-1165.00Protein BREAST CANCER SUSCEPTIBILITY 2-like n=1 Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_92_length_53089_cov_4.692668contigNODE_92_length_53089_cov_4.692668:51398..52237 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2936.t1Gcaud2936.t1Gracilaria caudata M_176_S67 malemRNANODE_92_length_53089_cov_4.692668 51398..52237 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2936.t1 ID=Gcaud2936.t1|Name=Gcaud2936.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=280bp
LFGAPATPADVGAGRPDGEKVHGNKPGVSKLPSLFSTASGKRLALPRAGA
SNVLTDIIADCAATTEASQRALQSPPAPRPLPPMALFTTASGKPVPPPPP
PANCNANVPPLAFNTPRPRKPPVSLFTTATGKSVPIPSPAVASIILHQDT
PDAKQAAVTAPAAAANAMRAAPANPQYAPVTASFATPSPLPRPRPSHVPP
SSAAKWNPSAATSNTAVLTRPASCVSSEAWTRMAYSLAVYKLLALQSASC
HTSHSHFFCAANVVREFLRRLCVEWHQSK*
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