Gcaud2352.t1 (polypeptide) Gracilaria caudata M_176_S67 male
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Overview
Homology
BLAST of Gcaud2352.t1 vs. uniprot
Match: A0A2V3J036_9FLOR (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J036_9FLOR) HSP 1 Score: 266 bits (679), Expect = 1.810e-89 Identity = 126/152 (82.89%), Postives = 141/152 (92.76%), Query Frame = 0
Query: 1 MAGIIFSDSFKIWRMDWDEKTKSIAKKFDKVSRIEGKSEAYETEMVLDVNTEIYPMAVGETVEVLITERLEDGPPNPDDPMGYNPVKPLGDRANMYEYIMRGKIFKYMEDMQRANIFFSFGGLLMKLHGESNILLSHIFQVDADVYLFIRKK 152
MAGIIFSDSFKI R+DWDEKTKS+ KKFDKVSRIEGKSEAY+TE+VLDVNTEIYP++ E +++LITERLED PPNPDDP GYNP+KPLGDRA+ YEYIM GKIFKY E+ QRANI+FSFGGLLMKLHGESNILLSHIF+VDADVYLF+RKK
Sbjct: 1 MAGIIFSDSFKIRRLDWDEKTKSVIKKFDKVSRIEGKSEAYDTELVLDVNTEIYPVSADEVIDILITERLEDTPPNPDDPEGYNPIKPLGDRADAYEYIMHGKIFKYHEERQRANIYFSFGGLLMKLHGESNILLSHIFRVDADVYLFVRKK 152
BLAST of Gcaud2352.t1 vs. uniprot
Match: UPI001CFABD58 (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Protopterus annectens TaxID=7888 RepID=UPI001CFABD58) HSP 1 Score: 114 bits (284), Expect = 1.900e-29 Identity = 64/158 (40.51%), Postives = 99/158 (62.66%), Query Frame = 0
Query: 1 MAGIIFSDSFKIWRMDWDEKTKSIAKKFDKVSRIEGKSEAYETEMVLDVNTEIYPMAVGETVEVLITERL-EDGPPNPDDPMGYNPVKPLGDRANMYEYIMRGKIFKYMED------MQRANIFFSFGGLLMKLHGESNILLSHIFQVDADVYLFIRK 151
MAGI+F D F + +D + KKFD+VSR+ +SE+++ E++LDVNT++YP+ +G+ ++I L EDG P+ D YNPV RA+ +EY+M GK+++ D R + + S+GGLLM+L G++N L H F+VD VYL ++K
Sbjct: 1 MAGILFEDIFDVKDID------PLGKKFDRVSRLHCESESFKMELILDVNTQVYPVDLGDKFRLVIASTLYEDGTPDDGD---YNPVDDKPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAYVSYGGLLMRLQGDANNL--HGFEVDTRVYLLMKK 147
BLAST of Gcaud2352.t1 vs. uniprot
Match: A0A1B0CWD7_LUTLO (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=10 Tax=Diptera TaxID=7147 RepID=A0A1B0CWD7_LUTLO) HSP 1 Score: 112 bits (280), Expect = 7.640e-29 Identity = 63/158 (39.87%), Postives = 99/158 (62.66%), Query Frame = 0
Query: 1 MAGIIFSDSFKIWRMDWDEKTKSIAKKFDKVSRIEGKSEAYETEMVLDVNTEIYPMAVGETVE-VLITERLEDGPPNPDDPMGYNPVKPLGDRANMYEYIMRGKIFK------YMEDMQRANIFFSFGGLLMKLHGESNILLSHIFQVDADVYLFIRK 151
MAG++F D F + MD + KKFD+VSR+ +SE+++ +++LD+N +YPM +G+ VL T EDG P + YNP++ G RA+ +EY+M GKI++ + E R + + SFGGLLM+L G++N L H F+VD ++YL ++K
Sbjct: 1 MAGVLFEDIFNVKDMDPE------GKKFDRVSRLHCESESFKMDLILDINCWLYPMELGDKFRLVLATTLYEDGHPGSGE---YNPLETEGTRADSFEYVMYGKIYRIEGDEAHTEASSRLSAYVSFGGLLMRLQGDANNL--HGFEVDQNIYLLMKK 147
BLAST of Gcaud2352.t1 vs. uniprot
Match: M2X5F5_GALSU (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2X5F5_GALSU) HSP 1 Score: 110 bits (275), Expect = 4.850e-28 Identity = 64/157 (40.76%), Postives = 93/157 (59.24%), Query Frame = 0
Query: 1 MAGIIFSDSFKIWRMDW-----DEKTKSIAKKFDKVSRIEGKSEAYETEMVLDVNTEIYPMAVGETVEVLITERLE-DGPPNPDDPMGYNPVKPLGDRANMYEYIMRGKIFKYMEDMQRANIFFSFGGLLMKLHGESNILLSHIFQVDADVYLFIRK 151
MA ++F D F + +D D K KKFDKVSRI E Y+TE++LD+N EIYP+ E E+++ L DG PDD + + +P + +EY M GKIFK+ E++ ++ ++ SFGGLLM L GE I+ F+VD+ +Y+ IRK
Sbjct: 1 MAAVLFEDVFSVTEVDMVKDPKDPSRKIKEKKFDKVSRILCYGENYQTELLLDINNEIYPIVEKEKFEMVLAPTLSLDG--RPDDGLYHPSEEP--SLLDKFEYGMYGKIFKFAEEVGKSVVYISFGGLLMALKGEPRIITPQSFEVDSGIYILIRK 153
BLAST of Gcaud2352.t1 vs. uniprot
Match: UPI001E1D4FCA (LOW QUALITY PROTEIN: DNA-directed RNA polymerases I, II, and III subunit RPABC3-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D4FCA) HSP 1 Score: 110 bits (274), Expect = 5.980e-28 Identity = 63/157 (40.13%), Postives = 97/157 (61.78%), Query Frame = 0
Query: 1 MAGIIFSDSFKIWRMDWDEKTKSIAKKFDKVSRIEGKSEAYETEMVLDVNTEIYPMAVGETVEVLITERL-EDGPPNPDDPMGYNPVKPLGDRANMYEYIMRGKIF-----KYMEDMQRANIFFSFGGLLMKLHGESNILLSHIFQVDADVYLFIRK 151
MAG++F D F + +D D KKFD+VSR+ +SE+++ +++LDVNT++YPM + + ++I L EDG P + YNP RA+ +EY+M GK++ KY D R + S+GGLLM+L G++N L H F+VD+ VYL ++K
Sbjct: 1 MAGVLFEDIFDVKDIDPD------GKKFDRVSRLFCESESFKMDLILDVNTQLYPMDLADKFRMVIATTLNEDGTPADSE---YNPTDTGPSRADSFEYVMYGKVYRLEGDKYPPDSSRLAAYVSYGGLLMRLQGDANNL--HGFEVDSHVYLLMKK 146
BLAST of Gcaud2352.t1 vs. uniprot
Match: Q9VNZ3_DROME (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=28 Tax=Schizophora TaxID=43738 RepID=Q9VNZ3_DROME) HSP 1 Score: 108 bits (271), Expect = 1.690e-27 Identity = 62/157 (39.49%), Postives = 99/157 (63.06%), Query Frame = 0
Query: 1 MAGIIFSDSFKIWRMDWDEKTKSIAKKFDKVSRIEGKSEAYETEMVLDVNTEIYPMAVGETVE-VLITERLEDGPPNPDDPMGYNPVKPLGDRANMYEYIMRGKIFKYMED-----MQRANIFFSFGGLLMKLHGESNILLSHIFQVDADVYLFIRK 151
MAG++F D F + MD + KKFD+VSR+ +SE+++ +++LD+N+ +YPM +G+ VL T EDG P+ + YNP++ G RA+ +EY+M GKI++ D R + + SFGGLLM+L G++N L H F+VD +YL +++
Sbjct: 1 MAGVLFEDIFNVKDMDPE------GKKFDRVSRLHCESESFKMDLILDINSWLYPMELGDKFRLVLATTLREDGCPDSGE---YNPMEHEGTRADSFEYVMYGKIYRIEGDEAHNEASRLSAYVSFGGLLMRLQGDANNL--HGFEVDQHMYLLMKR 146
BLAST of Gcaud2352.t1 vs. uniprot
Match: W8BYF3_CERCA (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=14 Tax=Schizophora TaxID=43738 RepID=W8BYF3_CERCA) HSP 1 Score: 108 bits (271), Expect = 1.740e-27 Identity = 61/158 (38.61%), Postives = 100/158 (63.29%), Query Frame = 0
Query: 1 MAGIIFSDSFKIWRMDWDEKTKSIAKKFDKVSRIEGKSEAYETEMVLDVNTEIYPMAVGETVE-VLITERLEDGPPNPDDPMGYNPVKPLGDRANMYEYIMRGKIFK------YMEDMQRANIFFSFGGLLMKLHGESNILLSHIFQVDADVYLFIRK 151
MAG++F D F + MD + KKFD+VSR+ +SE+++ +++LD+N+ +YPM +G+ VL T EDG P+ + +NP++ G RA+ +EY+M GK+++ + E R + + SFGGLLM+L G++N L H F+VD +YL ++K
Sbjct: 1 MAGVLFEDIFNVKDMDPE------GKKFDRVSRLHCESESFKMDLILDINSWLYPMELGDKFRLVLATTLREDGCPDSGE---FNPLEQEGTRADSFEYVMFGKVYRIEGDEAHNEASSRLSAYVSFGGLLMRLQGDANNL--HGFEVDQQMYLLMKK 147
BLAST of Gcaud2352.t1 vs. uniprot
Match: A0A6M2DN34_9NEOP (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=2 Tax=Pulicidae TaxID=7511 RepID=A0A6M2DN34_9NEOP) HSP 1 Score: 108 bits (271), Expect = 1.840e-27 Identity = 61/158 (38.61%), Postives = 99/158 (62.66%), Query Frame = 0
Query: 1 MAGIIFSDSFKIWRMDWDEKTKSIAKKFDKVSRIEGKSEAYETEMVLDVNTEIYPMAVGETVEVLITERLE-DGPPNPDDPMGYNPVKPLGDRANMYEYIMRGKIFKY------MEDMQRANIFFSFGGLLMKLHGESNILLSHIFQVDADVYLFIRK 151
MAG++F D F + MD + KKFD+VSR+ +SE+++ +++LD+N+ IYPM +G+ +++ L DG P+ P ++P++ G RA+ +EY+M GKI++ ME R + SFGGLLM+L G++N L H FQV+ +YL ++K
Sbjct: 1 MAGVLFEDIFNVKDMDPE------GKKFDRVSRLHCESESFKMDLILDINSWIYPMELGDKFRLVLATTLRADGYPD-SGPNDWSPLESEGSRADSFEYVMSGKIYRLEGDDNAMEASSRLAAYVSFGGLLMRLQGDANNL--HGFQVEQHIYLLMKK 149
BLAST of Gcaud2352.t1 vs. uniprot
Match: A0A3M7PH88_BRAPC (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=2 Tax=Brachionus TaxID=10194 RepID=A0A3M7PH88_BRAPC) HSP 1 Score: 108 bits (269), Expect = 3.390e-27 Identity = 59/157 (37.58%), Postives = 96/157 (61.15%), Query Frame = 0
Query: 1 MAGIIFSDSFKIWRMDWDEKTKSIAKKFDKVSRIEGKSEAYETEMVLDVNTEIYPMAVGETVEVLITERLEDGPPNPDDPMGYNPVKPLGDRANMYEYIMRGKIFKY------MEDMQRANIFFSFGGLLMKLHGESNILLSHIFQVDADVYLFIRK 151
M I+F D F + +D D +KFD+VSR+ +SE+++ +++LDVNT+IYPMA+G+ +LI +L D + ++ YNP+ RA+ +EY+M G++++ E + SFGGLLM+LHG++N L F+ DA+VYL ++K
Sbjct: 1 MGDILFEDIFDVKDIDPD------GQKFDRVSRLFCESESFKMDLILDVNTQIYPMALGDKFRLLICTKLRDDQADDNE---YNPLDTSPSRADQFEYVMHGRVYRIEGDETATESASNLKAYVSFGGLLMRLHGDANNLFG--FKQDANVYLLMKK 146
BLAST of Gcaud2352.t1 vs. uniprot
Match: A0A8B7PI25_HYAAZ (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Hyalella azteca TaxID=294128 RepID=A0A8B7PI25_HYAAZ) HSP 1 Score: 107 bits (267), Expect = 6.800e-27 Identity = 60/156 (38.46%), Postives = 97/156 (62.18%), Query Frame = 0
Query: 1 MAGIIFSDSFKIWRMDWDEKTKSIAKKFDKVSRIEGKSEAYETEMVLDVNTEIYPMAVGETVEVLITERL-EDGPPNPDDPMGYNPVKPLGDRANMYEYIMRGKIFKYMEDMQRAN----IFFSFGGLLMKLHGESNILLSHIFQVDADVYLFIRK 151
M+GI+F D F + ++ D KKFD+VSR+ +SE+++ +++LD+NT +YPM G+ +++ + L EDG P D YNP++ RA+ +EY+M GK+++ D A + S+GGLLMKL G++N L H F+VD +YL ++K
Sbjct: 1 MSGILFEDIFDVKDINCD------GKKFDRVSRLHCESESFKMDLILDINTWLYPMDFGDKFRLILAQTLREDG--YPTDGPNYNPLESGPSRADPFEYVMYGKVYRIEGDEGEATGRLAAYVSYGGLLMKLQGDANTL--HGFEVDKHIYLLMKK 146 The following BLAST results are available for this feature:
BLAST of Gcaud2352.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
Alignments
The following features are aligned
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >Gcaud2352.t1 ID=Gcaud2352.t1|Name=Gcaud2352.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=153bpback to top |