Gcaud2352.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2352.t1
Unique NameGcaud2352.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length153
Homology
BLAST of Gcaud2352.t1 vs. uniprot
Match: A0A2V3J036_9FLOR (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J036_9FLOR)

HSP 1 Score: 266 bits (679), Expect = 1.810e-89
Identity = 126/152 (82.89%), Postives = 141/152 (92.76%), Query Frame = 0
Query:    1 MAGIIFSDSFKIWRMDWDEKTKSIAKKFDKVSRIEGKSEAYETEMVLDVNTEIYPMAVGETVEVLITERLEDGPPNPDDPMGYNPVKPLGDRANMYEYIMRGKIFKYMEDMQRANIFFSFGGLLMKLHGESNILLSHIFQVDADVYLFIRKK 152
            MAGIIFSDSFKI R+DWDEKTKS+ KKFDKVSRIEGKSEAY+TE+VLDVNTEIYP++  E +++LITERLED PPNPDDP GYNP+KPLGDRA+ YEYIM GKIFKY E+ QRANI+FSFGGLLMKLHGESNILLSHIF+VDADVYLF+RKK
Sbjct:    1 MAGIIFSDSFKIRRLDWDEKTKSVIKKFDKVSRIEGKSEAYDTELVLDVNTEIYPVSADEVIDILITERLEDTPPNPDDPEGYNPIKPLGDRADAYEYIMHGKIFKYHEERQRANIYFSFGGLLMKLHGESNILLSHIFRVDADVYLFVRKK 152          
BLAST of Gcaud2352.t1 vs. uniprot
Match: UPI001CFABD58 (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Protopterus annectens TaxID=7888 RepID=UPI001CFABD58)

HSP 1 Score: 114 bits (284), Expect = 1.900e-29
Identity = 64/158 (40.51%), Postives = 99/158 (62.66%), Query Frame = 0
Query:    1 MAGIIFSDSFKIWRMDWDEKTKSIAKKFDKVSRIEGKSEAYETEMVLDVNTEIYPMAVGETVEVLITERL-EDGPPNPDDPMGYNPVKPLGDRANMYEYIMRGKIFKYMED------MQRANIFFSFGGLLMKLHGESNILLSHIFQVDADVYLFIRK 151
            MAGI+F D F +  +D       + KKFD+VSR+  +SE+++ E++LDVNT++YP+ +G+   ++I   L EDG P+  D   YNPV     RA+ +EY+M GK+++   D        R + + S+GGLLM+L G++N L  H F+VD  VYL ++K
Sbjct:    1 MAGILFEDIFDVKDID------PLGKKFDRVSRLHCESESFKMELILDVNTQVYPVDLGDKFRLVIASTLYEDGTPDDGD---YNPVDDKPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAYVSYGGLLMRLQGDANNL--HGFEVDTRVYLLMKK 147          
BLAST of Gcaud2352.t1 vs. uniprot
Match: A0A1B0CWD7_LUTLO (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=10 Tax=Diptera TaxID=7147 RepID=A0A1B0CWD7_LUTLO)

HSP 1 Score: 112 bits (280), Expect = 7.640e-29
Identity = 63/158 (39.87%), Postives = 99/158 (62.66%), Query Frame = 0
Query:    1 MAGIIFSDSFKIWRMDWDEKTKSIAKKFDKVSRIEGKSEAYETEMVLDVNTEIYPMAVGETVE-VLITERLEDGPPNPDDPMGYNPVKPLGDRANMYEYIMRGKIFK------YMEDMQRANIFFSFGGLLMKLHGESNILLSHIFQVDADVYLFIRK 151
            MAG++F D F +  MD +       KKFD+VSR+  +SE+++ +++LD+N  +YPM +G+    VL T   EDG P   +   YNP++  G RA+ +EY+M GKI++      + E   R + + SFGGLLM+L G++N L  H F+VD ++YL ++K
Sbjct:    1 MAGVLFEDIFNVKDMDPE------GKKFDRVSRLHCESESFKMDLILDINCWLYPMELGDKFRLVLATTLYEDGHPGSGE---YNPLETEGTRADSFEYVMYGKIYRIEGDEAHTEASSRLSAYVSFGGLLMRLQGDANNL--HGFEVDQNIYLLMKK 147          
BLAST of Gcaud2352.t1 vs. uniprot
Match: M2X5F5_GALSU (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2X5F5_GALSU)

HSP 1 Score: 110 bits (275), Expect = 4.850e-28
Identity = 64/157 (40.76%), Postives = 93/157 (59.24%), Query Frame = 0
Query:    1 MAGIIFSDSFKIWRMDW-----DEKTKSIAKKFDKVSRIEGKSEAYETEMVLDVNTEIYPMAVGETVEVLITERLE-DGPPNPDDPMGYNPVKPLGDRANMYEYIMRGKIFKYMEDMQRANIFFSFGGLLMKLHGESNILLSHIFQVDADVYLFIRK 151
            MA ++F D F +  +D      D   K   KKFDKVSRI    E Y+TE++LD+N EIYP+   E  E+++   L  DG   PDD + +   +P     + +EY M GKIFK+ E++ ++ ++ SFGGLLM L GE  I+    F+VD+ +Y+ IRK
Sbjct:    1 MAAVLFEDVFSVTEVDMVKDPKDPSRKIKEKKFDKVSRILCYGENYQTELLLDINNEIYPIVEKEKFEMVLAPTLSLDG--RPDDGLYHPSEEP--SLLDKFEYGMYGKIFKFAEEVGKSVVYISFGGLLMALKGEPRIITPQSFEVDSGIYILIRK 153          
BLAST of Gcaud2352.t1 vs. uniprot
Match: UPI001E1D4FCA (LOW QUALITY PROTEIN: DNA-directed RNA polymerases I, II, and III subunit RPABC3-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D4FCA)

HSP 1 Score: 110 bits (274), Expect = 5.980e-28
Identity = 63/157 (40.13%), Postives = 97/157 (61.78%), Query Frame = 0
Query:    1 MAGIIFSDSFKIWRMDWDEKTKSIAKKFDKVSRIEGKSEAYETEMVLDVNTEIYPMAVGETVEVLITERL-EDGPPNPDDPMGYNPVKPLGDRANMYEYIMRGKIF-----KYMEDMQRANIFFSFGGLLMKLHGESNILLSHIFQVDADVYLFIRK 151
            MAG++F D F +  +D D       KKFD+VSR+  +SE+++ +++LDVNT++YPM + +   ++I   L EDG P   +   YNP      RA+ +EY+M GK++     KY  D  R   + S+GGLLM+L G++N L  H F+VD+ VYL ++K
Sbjct:    1 MAGVLFEDIFDVKDIDPD------GKKFDRVSRLFCESESFKMDLILDVNTQLYPMDLADKFRMVIATTLNEDGTPADSE---YNPTDTGPSRADSFEYVMYGKVYRLEGDKYPPDSSRLAAYVSYGGLLMRLQGDANNL--HGFEVDSHVYLLMKK 146          
BLAST of Gcaud2352.t1 vs. uniprot
Match: Q9VNZ3_DROME (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=28 Tax=Schizophora TaxID=43738 RepID=Q9VNZ3_DROME)

HSP 1 Score: 108 bits (271), Expect = 1.690e-27
Identity = 62/157 (39.49%), Postives = 99/157 (63.06%), Query Frame = 0
Query:    1 MAGIIFSDSFKIWRMDWDEKTKSIAKKFDKVSRIEGKSEAYETEMVLDVNTEIYPMAVGETVE-VLITERLEDGPPNPDDPMGYNPVKPLGDRANMYEYIMRGKIFKYMED-----MQRANIFFSFGGLLMKLHGESNILLSHIFQVDADVYLFIRK 151
            MAG++F D F +  MD +       KKFD+VSR+  +SE+++ +++LD+N+ +YPM +G+    VL T   EDG P+  +   YNP++  G RA+ +EY+M GKI++   D       R + + SFGGLLM+L G++N L  H F+VD  +YL +++
Sbjct:    1 MAGVLFEDIFNVKDMDPE------GKKFDRVSRLHCESESFKMDLILDINSWLYPMELGDKFRLVLATTLREDGCPDSGE---YNPMEHEGTRADSFEYVMYGKIYRIEGDEAHNEASRLSAYVSFGGLLMRLQGDANNL--HGFEVDQHMYLLMKR 146          
BLAST of Gcaud2352.t1 vs. uniprot
Match: W8BYF3_CERCA (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=14 Tax=Schizophora TaxID=43738 RepID=W8BYF3_CERCA)

HSP 1 Score: 108 bits (271), Expect = 1.740e-27
Identity = 61/158 (38.61%), Postives = 100/158 (63.29%), Query Frame = 0
Query:    1 MAGIIFSDSFKIWRMDWDEKTKSIAKKFDKVSRIEGKSEAYETEMVLDVNTEIYPMAVGETVE-VLITERLEDGPPNPDDPMGYNPVKPLGDRANMYEYIMRGKIFK------YMEDMQRANIFFSFGGLLMKLHGESNILLSHIFQVDADVYLFIRK 151
            MAG++F D F +  MD +       KKFD+VSR+  +SE+++ +++LD+N+ +YPM +G+    VL T   EDG P+  +   +NP++  G RA+ +EY+M GK+++      + E   R + + SFGGLLM+L G++N L  H F+VD  +YL ++K
Sbjct:    1 MAGVLFEDIFNVKDMDPE------GKKFDRVSRLHCESESFKMDLILDINSWLYPMELGDKFRLVLATTLREDGCPDSGE---FNPLEQEGTRADSFEYVMFGKVYRIEGDEAHNEASSRLSAYVSFGGLLMRLQGDANNL--HGFEVDQQMYLLMKK 147          
BLAST of Gcaud2352.t1 vs. uniprot
Match: A0A6M2DN34_9NEOP (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=2 Tax=Pulicidae TaxID=7511 RepID=A0A6M2DN34_9NEOP)

HSP 1 Score: 108 bits (271), Expect = 1.840e-27
Identity = 61/158 (38.61%), Postives = 99/158 (62.66%), Query Frame = 0
Query:    1 MAGIIFSDSFKIWRMDWDEKTKSIAKKFDKVSRIEGKSEAYETEMVLDVNTEIYPMAVGETVEVLITERLE-DGPPNPDDPMGYNPVKPLGDRANMYEYIMRGKIFKY------MEDMQRANIFFSFGGLLMKLHGESNILLSHIFQVDADVYLFIRK 151
            MAG++F D F +  MD +       KKFD+VSR+  +SE+++ +++LD+N+ IYPM +G+   +++   L  DG P+   P  ++P++  G RA+ +EY+M GKI++       ME   R   + SFGGLLM+L G++N L  H FQV+  +YL ++K
Sbjct:    1 MAGVLFEDIFNVKDMDPE------GKKFDRVSRLHCESESFKMDLILDINSWIYPMELGDKFRLVLATTLRADGYPD-SGPNDWSPLESEGSRADSFEYVMSGKIYRLEGDDNAMEASSRLAAYVSFGGLLMRLQGDANNL--HGFQVEQHIYLLMKK 149          
BLAST of Gcaud2352.t1 vs. uniprot
Match: A0A3M7PH88_BRAPC (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=2 Tax=Brachionus TaxID=10194 RepID=A0A3M7PH88_BRAPC)

HSP 1 Score: 108 bits (269), Expect = 3.390e-27
Identity = 59/157 (37.58%), Postives = 96/157 (61.15%), Query Frame = 0
Query:    1 MAGIIFSDSFKIWRMDWDEKTKSIAKKFDKVSRIEGKSEAYETEMVLDVNTEIYPMAVGETVEVLITERLEDGPPNPDDPMGYNPVKPLGDRANMYEYIMRGKIFKY------MEDMQRANIFFSFGGLLMKLHGESNILLSHIFQVDADVYLFIRK 151
            M  I+F D F +  +D D       +KFD+VSR+  +SE+++ +++LDVNT+IYPMA+G+   +LI  +L D   + ++   YNP+     RA+ +EY+M G++++        E       + SFGGLLM+LHG++N L    F+ DA+VYL ++K
Sbjct:    1 MGDILFEDIFDVKDIDPD------GQKFDRVSRLFCESESFKMDLILDVNTQIYPMALGDKFRLLICTKLRDDQADDNE---YNPLDTSPSRADQFEYVMHGRVYRIEGDETATESASNLKAYVSFGGLLMRLHGDANNLFG--FKQDANVYLLMKK 146          
BLAST of Gcaud2352.t1 vs. uniprot
Match: A0A8B7PI25_HYAAZ (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Hyalella azteca TaxID=294128 RepID=A0A8B7PI25_HYAAZ)

HSP 1 Score: 107 bits (267), Expect = 6.800e-27
Identity = 60/156 (38.46%), Postives = 97/156 (62.18%), Query Frame = 0
Query:    1 MAGIIFSDSFKIWRMDWDEKTKSIAKKFDKVSRIEGKSEAYETEMVLDVNTEIYPMAVGETVEVLITERL-EDGPPNPDDPMGYNPVKPLGDRANMYEYIMRGKIFKYMEDMQRAN----IFFSFGGLLMKLHGESNILLSHIFQVDADVYLFIRK 151
            M+GI+F D F +  ++ D       KKFD+VSR+  +SE+++ +++LD+NT +YPM  G+   +++ + L EDG   P D   YNP++    RA+ +EY+M GK+++   D   A      + S+GGLLMKL G++N L  H F+VD  +YL ++K
Sbjct:    1 MSGILFEDIFDVKDINCD------GKKFDRVSRLHCESESFKMDLILDINTWLYPMDFGDKFRLILAQTLREDG--YPTDGPNYNPLESGPSRADPFEYVMYGKVYRIEGDEGEATGRLAAYVSYGGLLMKLQGDANTL--HGFEVDKHIYLLMKK 146          
The following BLAST results are available for this feature:
BLAST of Gcaud2352.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J036_9FLOR1.810e-8982.89DNA-directed RNA polymerases I, II, and III subuni... [more]
UPI001CFABD581.900e-2940.51DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A1B0CWD7_LUTLO7.640e-2939.87DNA-directed RNA polymerases I, II, and III subuni... [more]
M2X5F5_GALSU4.850e-2840.76DNA-directed RNA polymerases I, II, and III subuni... [more]
UPI001E1D4FCA5.980e-2840.13LOW QUALITY PROTEIN: DNA-directed RNA polymerases ... [more]
Q9VNZ3_DROME1.690e-2739.49DNA-directed RNA polymerases I, II, and III subuni... [more]
W8BYF3_CERCA1.740e-2738.61DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A6M2DN34_9NEOP1.840e-2738.61DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A3M7PH88_BRAPC3.390e-2737.58DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A8B7PI25_HYAAZ6.800e-2738.46DNA-directed RNA polymerases I, II, and III subuni... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005570RNA polymerase, Rpb8SMARTSM00658rpol8neucoord: 2..151
e-value: 1.8E-36
score: 137.2
IPR005570RNA polymerase, Rpb8PIRSFPIRSF000779RPB8coord: 1..152
e-value: 6.7E-35
score: 118.2
IPR005570RNA polymerase, Rpb8PFAMPF03870RNA_pol_Rpb8coord: 24..151
e-value: 3.9E-32
score: 111.3
IPR005570RNA polymerase, Rpb8PANTHERPTHR10917DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3coord: 1..151
NoneNo IPR availableGENE3D2.40.50.140coord: 6..152
e-value: 3.1E-37
score: 129.8
NoneNo IPR availablePANTHERPTHR10917:SF0DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3coord: 1..151
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 3..151

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_48_length_65905_cov_4.503282contigNODE_48_length_65905_cov_4.503282:44137..44843 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2352.t1Gcaud2352.t1Gracilaria caudata M_176_S67 malemRNANODE_48_length_65905_cov_4.503282 44137..44843 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2352.t1 ID=Gcaud2352.t1|Name=Gcaud2352.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=153bp
MAGIIFSDSFKIWRMDWDEKTKSIAKKFDKVSRIEGKSEAYETEMVLDVN
TEIYPMAVGETVEVLITERLEDGPPNPDDPMGYNPVKPLGDRANMYEYIM
RGKIFKYMEDMQRANIFFSFGGLLMKLHGESNILLSHIFQVDADVYLFIR
KK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005570RNA_pol_Rpb8
IPR012340NA-bd_OB-fold