Gcaud1840.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1840.t1
Unique NameGcaud1840.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length162
Homology
BLAST of Gcaud1840.t1 vs. uniprot
Match: A0A2V3IR07_9FLOR (SsrA-binding protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IR07_9FLOR)

HSP 1 Score: 238 bits (607), Expect = 9.910e-78
Identity = 119/158 (75.32%), Postives = 138/158 (87.34%), Query Frame = 0
Query:    4 SKRPRNYSPTFDNRIARARYEFLEKHECGVELLGTEVKSVRLGQANLRDSYAVIREGQLYVKNMRISHYPFATEKFNHEPLREKKLLLHKREIRKLASKVAEKGLTLVPTRLYFTNGFVKVEIALAKGKQERDRREDIKKRDDQREMRRIEKIVVRGM 161
            +++ RNY+PT DNRIAR+RY+FLE HECG++LLGTEVKSVRLGQ NLRDSYA++R  QLYV+NM IS Y FA+EKFNH+P REKKLLLHK+ IRKL + VAEKGLTLVPTRLYF NG+ K+EIALAKGK  RDRREDIKKRDD R MR++EKI VRGM
Sbjct:   37 ARKARNYNPTIDNRIARSRYDFLETHECGMQLLGTEVKSVRLGQVNLRDSYAIVRNAQLYVRNMHISPYSFASEKFNHQPRREKKLLLHKKAIRKLGALVAEKGLTLVPTRLYFANGYAKIEIALAKGKNVRDRREDIKKRDDDRYMRQVEKIAVRGM 194          
BLAST of Gcaud1840.t1 vs. uniprot
Match: K9WLZ0_9CYAN (SsrA-binding protein n=2 Tax=Oscillatoriales TaxID=1150 RepID=K9WLZ0_9CYAN)

HSP 1 Score: 162 bits (409), Expect = 3.550e-48
Identity = 86/152 (56.58%), Postives = 113/152 (74.34%), Query Frame = 0
Query:    4 SKRPRNYSPTFDNRIARARYEFLEKHECGVELLGTEVKSVRLGQANLRDSYAVIREGQLYVKNMRISHYPFATEKFNHEPLREKKLLLHKREIRKLASKVAEKGLTLVPTRLYFTNGFVKVEIALAKGKQERDRREDIKKRDDQREMRRIEK 155
            S++  +Y    DNR AR RYE LE +E GVEL GTEVKS+R G+ANL+D YA+IR G+ ++ N+ IS Y  AT+ FNH+P R ++LLLHK+EIRKL  KV ++GLTLVP ++YF  GFVKV IAL KGK+  D+RE +K+R D+R+M R  K
Sbjct:    2 SEKSDSYKVIADNRQARFRYEILETYEAGVELKGTEVKSIRQGKANLQDGYALIRNGEAWLLNVHISPYQKATDFFNHDPRRTRRLLLHKKEIRKLIGKVEQEGLTLVPLKMYFKRGFVKVTIALGKGKKLHDKRESLKERQDKRDMARAMK 153          
BLAST of Gcaud1840.t1 vs. uniprot
Match: A0A6M0C0I4_9CYAN (SsrA-binding protein n=1 Tax=Okeania sp. SIO2H7 TaxID=2607802 RepID=A0A6M0C0I4_9CYAN)

HSP 1 Score: 161 bits (408), Expect = 5.200e-48
Identity = 86/146 (58.90%), Postives = 110/146 (75.34%), Query Frame = 0
Query:   10 YSPTFDNRIARARYEFLEKHECGVELLGTEVKSVRLGQANLRDSYAVIREGQLYVKNMRISHYPFATEKFNHEPLREKKLLLHKREIRKLASKVAEKGLTLVPTRLYFTNGFVKVEIALAKGKQERDRREDIKKRDDQREMRRIEK 155
            Y    DNR AR +Y  LE +E G+EL GTEVKS+R G+ N+RDSYA+IR  + ++ N+ IS Y  A+E FNH+P R ++LLLHK+EIRKL  KV ++GLTLVP +LYF  G VKVEIALAKGK+  D+REDIKKR+D+R M+R  K
Sbjct:    9 YKVIADNRQARYQYHILETYEAGIELKGTEVKSIRAGRCNVRDSYALIRNDEAWLLNLHISPYQGASEYFNHDPRRTRRLLLHKQEIRKLIGKVEQQGLTLVPLKLYFKQGRVKVEIALAKGKKLHDKREDIKKREDKRSMQRAMK 154          
BLAST of Gcaud1840.t1 vs. uniprot
Match: UPI00034669C3 (SsrA-binding protein SmpB n=1 Tax=Pseudanabaena sp. PCC 6802 TaxID=118173 RepID=UPI00034669C3)

HSP 1 Score: 160 bits (405), Expect = 1.310e-47
Identity = 83/148 (56.08%), Postives = 114/148 (77.03%), Query Frame = 0
Query:   10 YSPTF-DNRIARARYEFLEKHECGVELLGTEVKSVRLGQANLRDSYAVIREGQLYVKNMRISHYPFATEKFNHEPLREKKLLLHKREIRKLASKVAEKGLTLVPTRLYFTNGFVKVEIALAKGKQERDRREDIKKRDDQREMRRIEKI 156
            Y+ TF +NR AR  YE LE +E G+ELLGTEVKS++ GQANLRD++A+IR GQ+ + NM ++ +   +  FNHEP R ++LL+HK+EIRKL  KV +KGLTLVP +LY  NG+VKV++AL + K+  D+REDIKKR+D+R+M R  K+
Sbjct:    4 YNRTFAENRQARFNYEILETYEAGIELLGTEVKSIKTGQANLRDAFALIRNGQVLLLNMYVAPHKTTSAFFNHEPTRTRRLLMHKQEIRKLTGKVQQKGLTLVPLKLYLKNGWVKVDVALVRNKKLYDKREDIKKREDKRDMERATKM 151          
BLAST of Gcaud1840.t1 vs. uniprot
Match: A0A2N5JP85_9CYAN (SsrA-binding protein n=1 Tax=Cyanobacteria bacterium M5B4 TaxID=2054928 RepID=A0A2N5JP85_9CYAN)

HSP 1 Score: 159 bits (403), Expect = 2.640e-47
Identity = 82/142 (57.75%), Postives = 107/142 (75.35%), Query Frame = 0
Query:   15 DNRIARARYEFLEKHECGVELLGTEVKSVRLGQANLRDSYAVIREGQLYVKNMRISHYPFATEKFNHEPLREKKLLLHKREIRKLASKVAEKGLTLVPTRLYFTNGFVKVEIALAKGKQERDRREDIKKRDDQREMRRIEKI 156
            +NR AR  YE +E +E G+ELLGTEV+SV+ G ANLRD+YA+IR+GQ+++ N  I+ +P     FNHEP R ++LLLH+ EIRKL  KV +KG TLVP +LY  NG++KV + LAK K+  D+REDIKKRDDQREM R  K+
Sbjct:   10 ENRQARFNYEIVETYEAGIELLGTEVRSVKAGLANLRDAYAIIRDGQVWLLNTYIAPHPSTQSYFNHEPTRTRRLLLHQEEIRKLIGKVEQKGFTLVPLKLYLKNGWIKVSLGLAKAKKLYDKREDIKKRDDQREMARAMKL 151          
BLAST of Gcaud1840.t1 vs. uniprot
Match: A0A3C1M162_9CYAN (SsrA-binding protein n=1 Tax=Cyanobacteria bacterium UBA8156 TaxID=2055767 RepID=A0A3C1M162_9CYAN)

HSP 1 Score: 159 bits (403), Expect = 2.640e-47
Identity = 84/148 (56.76%), Postives = 111/148 (75.00%), Query Frame = 0
Query:    9 NYSPTF-DNRIARARYEFLEKHECGVELLGTEVKSVRLGQANLRDSYAVIREGQLYVKNMRISHYPFATEKFNHEPLREKKLLLHKREIRKLASKVAEKGLTLVPTRLYFTNGFVKVEIALAKGKQERDRREDIKKRDDQREMRRIEK 155
            +YSP F DNR AR  YE LE +E G+EL+GTEVKS+R GQANLRDSYA++R G++++ NM I+ +   +  FNHEP R ++LLLHK+EIRKL  KV +KGLTLVP +LY + G++KV I LA+ K+  D+RE I+KRD  RE+ R  K
Sbjct:    2 SYSPVFADNRQARFNYEILETYEAGIELVGTEVKSIRRGQANLRDSYAIVRNGEIFLLNMYIAPHATTSAVFNHEPTRTRRLLLHKQEIRKLIGKVEQKGLTLVPLKLYLSKGWIKVSIGLARSKKLHDKRETIQKRDATREIARAMK 149          
BLAST of Gcaud1840.t1 vs. uniprot
Match: A0A1Z4ISL6_9CYAN (SsrA-binding protein n=1 Tax=Scytonema sp. HK-05 TaxID=1137095 RepID=A0A1Z4ISL6_9CYAN)

HSP 1 Score: 159 bits (402), Expect = 4.110e-47
Identity = 84/152 (55.26%), Postives = 110/152 (72.37%), Query Frame = 0
Query:    4 SKRPRNYSPTFDNRIARARYEFLEKHECGVELLGTEVKSVRLGQANLRDSYAVIREGQLYVKNMRISHYPFATEKFNHEPLREKKLLLHKREIRKLASKVAEKGLTLVPTRLYFTNGFVKVEIALAKGKQERDRREDIKKRDDQREMRRIEK 155
            S +   Y    DNR AR  YE LE +E G+EL GTEVKS+R G+ANL+D YA+IR+G++++ N  IS Y  + + FNHEP R +KLLLH+ +IRKL  KV ++GLTLVP ++Y   G+VKV IAL KGK+  D+REDIK+R DQREM+R  K
Sbjct:    2 SDKNEGYKVVSDNRQARYLYEILETYEAGIELTGTEVKSIRAGKANLQDGYALIRDGEVWLINAHISPYTSSGQYFNHEPRRTRKLLLHREQIRKLIGKVEQQGLTLVPLKMYLKRGWVKVSIALGKGKKVHDKREDIKRRQDQREMQRAMK 153          
BLAST of Gcaud1840.t1 vs. uniprot
Match: UPI000B31C000 (SsrA-binding protein SmpB n=1 Tax=Cyanobacteria bacterium SBC TaxID=2821503 RepID=UPI000B31C000)

HSP 1 Score: 159 bits (401), Expect = 6.010e-47
Identity = 82/146 (56.16%), Postives = 108/146 (73.97%), Query Frame = 0
Query:   10 YSPTFDNRIARARYEFLEKHECGVELLGTEVKSVRLGQANLRDSYAVIREGQLYVKNMRISHYPFATEKFNHEPLREKKLLLHKREIRKLASKVAEKGLTLVPTRLYFTNGFVKVEIALAKGKQERDRREDIKKRDDQREMRRIEK 155
            Y    DNR AR RYE L+ +E G+EL GTEVKS+RLG+ NLRD YA+IR  + ++ N+ IS Y  A+E FNH+P R +KLLLH+ EIRKL  KV E+GLTLVP ++Y  NG+VKV I L KGK+  D+RED+KK+ ++RE+ R+ K
Sbjct:    9 YKIVSDNRQARYRYEILDTYEAGIELKGTEVKSIRLGRVNLRDGYALIRNNEAWLHNVHISPYDTASEYFNHDPRRTRKLLLHREEIRKLIGKVEERGLTLVPLKMYLKNGWVKVTIGLGKGKKLHDKREDLKKKQEKREIARMMK 154          
BLAST of Gcaud1840.t1 vs. uniprot
Match: A0A0C2LGS9_9CYAN (SsrA-binding protein n=6 Tax=Nostocales TaxID=1161 RepID=A0A0C2LGS9_9CYAN)

HSP 1 Score: 158 bits (400), Expect = 8.260e-47
Identity = 82/152 (53.95%), Postives = 110/152 (72.37%), Query Frame = 0
Query:    4 SKRPRNYSPTFDNRIARARYEFLEKHECGVELLGTEVKSVRLGQANLRDSYAVIREGQLYVKNMRISHYPFATEKFNHEPLREKKLLLHKREIRKLASKVAEKGLTLVPTRLYFTNGFVKVEIALAKGKQERDRREDIKKRDDQREMRRIEK 155
            S+  + Y    DNR AR  YE LE +E G+EL GTEVKS+R G+ NL+D YA+IR+GQ ++ N  IS Y  + + FNHEP R +KLLLH+ EIRKL  KV ++GLTL+P ++Y   G+VK+ IALA+GK+  D+REDIK+R DQR+M+R  K
Sbjct:    2 SENSQGYKVVTDNRQARYLYEILETYEAGIELTGTEVKSIRAGKVNLQDGYALIRDGQAWLLNAHISPYNASGQYFNHEPRRTRKLLLHREEIRKLIGKVEQQGLTLIPLKMYLKRGWVKISIALARGKKVHDKREDIKRRQDQRDMQRAMK 153          
BLAST of Gcaud1840.t1 vs. uniprot
Match: A0A6M0F0H0_9CYAN (SsrA-binding protein n=5 Tax=Cyanobacteria TaxID=1117 RepID=A0A6M0F0H0_9CYAN)

HSP 1 Score: 158 bits (400), Expect = 8.260e-47
Identity = 86/152 (56.58%), Postives = 109/152 (71.71%), Query Frame = 0
Query:    4 SKRPRNYSPTFDNRIARARYEFLEKHECGVELLGTEVKSVRLGQANLRDSYAVIREGQLYVKNMRISHYPFATEKFNHEPLREKKLLLHKREIRKLASKVAEKGLTLVPTRLYFTNGFVKVEIALAKGKQERDRREDIKKRDDQREMRRIEK 155
            S +  +Y    DNR AR RYE LE +E GVEL GTEVKS+R G+ NLRD YA+IR G+ ++ N+ IS Y  +   FNH+P R ++LLLHK+EIRKL  KV ++GLTLVP ++Y   GFVKV IALAKGK+  D+RE IK+R D+REM R  K
Sbjct:    2 SDKGESYKVVSDNRQARFRYEILETYEAGVELKGTEVKSIRQGKVNLRDGYALIRNGEAWLLNVHISPYESSGNFFNHDPRRTRRLLLHKKEIRKLIGKVEQEGLTLVPLKMYMKRGFVKVAIALAKGKKIHDKRETIKQRQDKREMARAMK 153          
The following BLAST results are available for this feature:
BLAST of Gcaud1840.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IR07_9FLOR9.910e-7875.32SsrA-binding protein n=1 Tax=Gracilariopsis chorda... [more]
K9WLZ0_9CYAN3.550e-4856.58SsrA-binding protein n=2 Tax=Oscillatoriales TaxID... [more]
A0A6M0C0I4_9CYAN5.200e-4858.90SsrA-binding protein n=1 Tax=Okeania sp. SIO2H7 Ta... [more]
UPI00034669C31.310e-4756.08SsrA-binding protein SmpB n=1 Tax=Pseudanabaena sp... [more]
A0A2N5JP85_9CYAN2.640e-4757.75SsrA-binding protein n=1 Tax=Cyanobacteria bacteri... [more]
A0A3C1M162_9CYAN2.640e-4756.76SsrA-binding protein n=1 Tax=Cyanobacteria bacteri... [more]
A0A1Z4ISL6_9CYAN4.110e-4755.26SsrA-binding protein n=1 Tax=Scytonema sp. HK-05 T... [more]
UPI000B31C0006.010e-4756.16SsrA-binding protein SmpB n=1 Tax=Cyanobacteria ba... [more]
A0A0C2LGS9_9CYAN8.260e-4753.95SsrA-binding protein n=6 Tax=Nostocales TaxID=1161... [more]
A0A6M0F0H0_9CYAN8.260e-4756.58SsrA-binding protein n=5 Tax=Cyanobacteria TaxID=1... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000037SsrA-binding proteinTIGRFAMTIGR00086TIGR00086coord: 14..153
e-value: 5.8E-51
score: 170.3
IPR000037SsrA-binding proteinPFAMPF01668SmpBcoord: 15..154
e-value: 1.6E-54
score: 183.7
IPR000037SsrA-binding proteinPANTHERPTHR30308TMRNA-BINDING COMPONENT OF TRANS-TRANSLATION TAGGING COMPLEXcoord: 8..154
IPR000037SsrA-binding proteinHAMAPMF_00023SmpBcoord: 1..160
score: 61.90625
IPR000037SsrA-binding proteinCDDcd09294SmpBcoord: 16..132
e-value: 2.32384E-60
score: 180.624
IPR023620Small protein BGENE3D2.40.280.10coord: 6..133
e-value: 1.7E-45
score: 156.0
IPR023620Small protein BSUPERFAMILY74982Small protein B (SmpB)coord: 8..137
IPR020081SsrA-binding protein, conserved sitePROSITEPS01317SSRPcoord: 31..43

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_207_length_37223_cov_4.468356contigNODE_207_length_37223_cov_4.468356:5784..6269 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1840.t1Gcaud1840.t1Gracilaria caudata M_176_S67 malemRNANODE_207_length_37223_cov_4.468356 5784..6269 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1840.t1 ID=Gcaud1840.t1|Name=Gcaud1840.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=162bp
MAKSKRPRNYSPTFDNRIARARYEFLEKHECGVELLGTEVKSVRLGQANL
RDSYAVIREGQLYVKNMRISHYPFATEKFNHEPLREKKLLLHKREIRKLA
SKVAEKGLTLVPTRLYFTNGFVKVEIALAKGKQERDRREDIKKRDDQREM
RRIEKIVVRGM*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000037SsrA-bd_prot
IPR023620SmpB
IPR020081SsrA-bd_prot_CS