Gcaud1679.t2 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1679.t2
Unique NameGcaud1679.t2
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length372
Homology
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BLAST of Gcaud1679.t2 vs. uniprot
Match: A0A2V3IXK9_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IXK9_9FLOR)

HSP 1 Score: 529 bits (1363), Expect = 7.560e-184
Identity = 263/371 (70.89%), Postives = 309/371 (83.29%), Query Frame = 0 
Query:    1 MLGLADAEGQDVLRNMLRDVVSLLGGPSMALIYAVSSNSIAGFRYVKVELCRAEYSRRGTLGDLSWICRSVAAYEAVPIADENVVAEAMRAVHHEDLANDVEQLLRGNDVPVRLLLKYDVASAVRAIPHRRAMNRLRYAALLSRRTMLVPTAANARYDKVRATSAIHAIDAEGRVVGRKWLALALIVVASACGAAVAAYCISRDENVNSAEIIGTALAVGTVLLITLPQLHVETIGAGYTIGDLYRGCMPMTVVMQRRDVAFLKECVRKGANVEGVISGRHGCFLLGRARGNLDIGPVKVRDLDDRWDYGVSDRGVLCLRYRGLVGDMQVRERKIDGKMCRWWHCAVVGSKIVKGVGKAEVLEYLGDGEIG 371
            MLG+AD EGQ  LR ML +VV +LGGPSMALIYAVSS+ +A FR+ KVELCRA +S  G LGDLSW+ R   AY+ VPIADENVVA+AMRAVH E LA+D+  LL G++VPV LLL+YDVA AV AIPH +A+NRLRYA LLSRR +LVPTA  AR+DKV+ +S IH++DAEGRVVGRKWL + +I + S C A V AY  S D NVNSAE+ GT +A+ TVLLITLPQL+VE IGAGY+I +LYRGC+PM  +M+R  VAFLKEC+RKGA+VEGVISGRHGCFLLG ARG L++GPVKV DLDDRWDYG++DRGVLCLRYRG+VGDMQVRE+++DGKMCRWWHCAVVGS IVKGV K EVL+ LG GEIG
Sbjct:  176 MLGIADVEGQQALREMLLEVVPILGGPSMALIYAVSSSVVASFRFAKVELCRAVHSTGGRLGDLSWVYRCTPAYDVVPIADENVVAKAMRAVHDESLADDIAHLLEGDNVPVGLLLRYDVAKAVCAIPHSQAVNRLRYAGLLSRRDLLVPTAIYARHDKVQCSSIIHSVDAEGRVVGRKWL-IRVIALFSLCAAVVTAYLFSLDRNVNSAEVFGTGIAMVTVLLITLPQLYVECIGAGYSIRELYRGCVPMAALMEREGVAFLKECLRKGADVEGVISGRHGCFLLGTARGGLEVGPVKVDDLDDRWDYGLNDRGVLCLRYRGIVGDMQVREQEVDGKMCRWWHCAVVGSTIVKGVSKCEVLDKLGQGEIG 545
The following BLAST results are available for this feature:
BLAST of Gcaud1679.t2 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IXK9_9FLOR7.560e-18470.89Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 44..179
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..19
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 20..43
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 200..371
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 180..199
NoneNo IPR availableTMHMMTMhelixcoord: 212..231
NoneNo IPR availableTMHMMTMhelixcoord: 20..42
NoneNo IPR availableTMHMMTMhelixcoord: 180..202

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_494_length_23790_cov_4.579307contigNODE_494_length_23790_cov_4.579307:6973..8088 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1679.t2Gcaud1679.t2Gracilaria caudata M_176_S67 malemRNANODE_494_length_23790_cov_4.579307 6973..8088 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1679.t2 ID=Gcaud1679.t2|Name=Gcaud1679.t2|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=372bp
MLGLADAEGQDVLRNMLRDVVSLLGGPSMALIYAVSSNSIAGFRYVKVEL
CRAEYSRRGTLGDLSWICRSVAAYEAVPIADENVVAEAMRAVHHEDLAND
VEQLLRGNDVPVRLLLKYDVASAVRAIPHRRAMNRLRYAALLSRRTMLVP
TAANARYDKVRATSAIHAIDAEGRVVGRKWLALALIVVASACGAAVAAYC
ISRDENVNSAEIIGTALAVGTVLLITLPQLHVETIGAGYTIGDLYRGCMP
MTVVMQRRDVAFLKECVRKGANVEGVISGRHGCFLLGRARGNLDIGPVKV
RDLDDRWDYGVSDRGVLCLRYRGLVGDMQVRERKIDGKMCRWWHCAVVGS
KIVKGVGKAEVLEYLGDGEIG*
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