Gcaud1540.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1540.t1
Unique NameGcaud1540.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length103
Homology
BLAST of Gcaud1540.t1 vs. uniprot
Match: A0A2V3IYN0_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IYN0_9FLOR)

HSP 1 Score: 153 bits (387), Expect = 1.530e-46
Identity = 81/102 (79.41%), Postives = 96/102 (94.12%), Query Frame = 0
Query:    1 MVSTAFVSATPVLARATPSLTTTSFTSRRTVVVPARRSATVMMADKEKIPQGFTAYSEILNGRAAMLGLMLAIVTEAITGKGILGQLAALGDVSSITNALGL 102
            MVSTAFV+ATPVLAR  PS++ TSFTSR  V +PARRSAT+MMADKE+IPQGFTA+SE+LNGRAAMLG++LAIVTEAITGKGI+GQ+AALGD++SIT+ALGL
Sbjct:    1 MVSTAFVAATPVLARTIPSVSNTSFTSRSIVALPARRSATIMMADKERIPQGFTAFSEVLNGRAAMLGIVLAIVTEAITGKGIVGQVAALGDIASITHALGL 102          
BLAST of Gcaud1540.t1 vs. uniprot
Match: A0A2V3IYF7_9FLOR (Uncharacterized protein n=2 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IYF7_9FLOR)

HSP 1 Score: 96.3 bits (238), Expect = 7.610e-24
Identity = 54/101 (53.47%), Postives = 74/101 (73.27%), Query Frame = 0
Query:    5 AFVSATPVLARATPSLTTTSFTSRRTVVVPARRSATVMMA----DKEKIPQGFTAYSEILNGRAAMLGLMLAIVTEAITGKGILGQLAALGDVSSITNALG 101
            AFVS TP+++R   ++   S TSRR+V V   R A + MA    + EKIPQGFT++SE+LNGRAAMLG  LA+VTE ITGKGILGQ+ ++ ++ ++ +ALG
Sbjct:    2 AFVSPTPIISRTNTAVGAASITSRRSVAVTPVRRAALRMAGEGPEMEKIPQGFTSFSELLNGRAAMLGFTLAVVTELITGKGILGQVGSVFEIVNLASALG 102          
BLAST of Gcaud1540.t1 vs. uniprot
Match: B0BZB4_ACAM1 (High light inducible protein n=1 Tax=Acaryochloris marina (strain MBIC 11017) TaxID=329726 RepID=B0BZB4_ACAM1)

HSP 1 Score: 55.8 bits (133), Expect = 1.610e-8
Identity = 27/38 (71.05%), Postives = 32/38 (84.21%), Query Frame = 0
Query:   52 GFTAYSEILNGRAAMLGLMLAIVTEAITGKGILGQLAA 89
            GF+A+SE  NGR AM+G  LAI+TEA+TGKGILGQL A
Sbjct:    8 GFSAFSETWNGRLAMIGFTLAIITEALTGKGILGQLVA 45          
BLAST of Gcaud1540.t1 vs. uniprot
Match: UPI0002483FDE (chlorophyll a/b-binding protein n=1 Tax=Acaryochloris sp. CCMEE 5410 TaxID=310037 RepID=UPI0002483FDE)

HSP 1 Score: 52.8 bits (125), Expect = 2.670e-7
Identity = 24/36 (66.67%), Postives = 31/36 (86.11%), Query Frame = 0
Query:   52 GFTAYSEILNGRAAMLGLMLAIVTEAITGKGILGQL 87
            GF+A+SE  NGR AM+G  LA++TEA+TGKGI+GQL
Sbjct:    9 GFSAFSETWNGRLAMIGFTLALITEALTGKGIIGQL 44          
BLAST of Gcaud1540.t1 vs. uniprot
Match: B0C5W4_ACAM1 (High light inducible protein n=2 Tax=Acaryochloridaceae TaxID=1890429 RepID=B0C5W4_ACAM1)

HSP 1 Score: 52.4 bits (124), Expect = 3.860e-7
Identity = 24/38 (63.16%), Postives = 31/38 (81.58%), Query Frame = 0
Query:   52 GFTAYSEILNGRAAMLGLMLAIVTEAITGKGILGQLAA 89
            GFT+Y+E  +GR AM G  +A+VTE +TGKGILGQL+A
Sbjct:    9 GFTSYAETFSGRLAMYGFFIALVTEVLTGKGILGQLSA 46          
BLAST of Gcaud1540.t1 vs. uniprot
Match: A0A8J6QE11_9CYAN (Uncharacterized protein n=1 Tax=Vulcanococcus sp. Clear-D1 TaxID=2766970 RepID=A0A8J6QE11_9CYAN)

HSP 1 Score: 52.8 bits (125), Expect = 4.650e-7
Identity = 29/51 (56.86%), Postives = 35/51 (68.63%), Query Frame = 0
Query:   40 TVMMADKEKIPQ---GFTAYSEILNGRAAMLGLMLAIVTEAITGKGILGQL 87
            T M     KIP    GF  ++E LNGR AMLG ++AI TEA++GKGILGQL
Sbjct:   21 TAMAGSDFKIPYQRTGFVPFAESLNGRLAMLGFVIAIATEALSGKGILGQL 71          
BLAST of Gcaud1540.t1 vs. uniprot
Match: B0CET4_ACAM1 (High light inducible protein n=2 Tax=Acaryochloridaceae TaxID=1890429 RepID=B0CET4_ACAM1)

HSP 1 Score: 52.0 bits (123), Expect = 5.350e-7
Identity = 23/39 (58.97%), Postives = 33/39 (84.62%), Query Frame = 0
Query:   52 GFTAYSEILNGRAAMLGLMLAIVTEAITGKGILGQLAAL 90
            GFT+++E L GR AM+G  LA++TE +TG+GI+GQ+AAL
Sbjct:    9 GFTSFAETLGGRLAMVGFSLAVITEVLTGQGIVGQIAAL 47          
BLAST of Gcaud1540.t1 vs. uniprot
Match: A0A4P7ZQM1_9SYNE (Uncharacterized protein n=1 Tax=Synechococcus sp. CB0101 TaxID=232348 RepID=A0A4P7ZQM1_9SYNE)

HSP 1 Score: 51.6 bits (122), Expect = 7.910e-7
Identity = 28/49 (57.14%), Postives = 35/49 (71.43%), Query Frame = 0
Query:   42 MMADKEKIPQ---GFTAYSEILNGRAAMLGLMLAIVTEAITGKGILGQL 87
            M +   KIP    GF  ++E LNGR AMLG ++AI TEA++GKGILGQL
Sbjct:    1 MASSDFKIPYQRTGFVPFAESLNGRLAMLGFVIAIATEALSGKGILGQL 49          
BLAST of Gcaud1540.t1 vs. uniprot
Match: A0A2T1LYU0_9CHRO (High light inducible protein n=2 Tax=Chroococcales TaxID=1118 RepID=A0A2T1LYU0_9CHRO)

HSP 1 Score: 50.8 bits (120), Expect = 1.390e-6
Identity = 26/45 (57.78%), Postives = 33/45 (73.33%), Query Frame = 0
Query:   43 MADKEKIPQGFTAYSEILNGRAAMLGLMLAIVTEAITGKGILGQL 87
            M +KEK   GFTA++E  NGR AMLG ++ + TE +TGKGIL QL
Sbjct:    1 MMEKEKF--GFTAFAENWNGRLAMLGFVIGVATELVTGKGILAQL 43          
BLAST of Gcaud1540.t1 vs. uniprot
Match: A8ZP27_ACAM1 (Conserved domain protein n=1 Tax=Acaryochloris marina (strain MBIC 11017) TaxID=329726 RepID=A8ZP27_ACAM1)

HSP 1 Score: 50.4 bits (119), Expect = 2.150e-6
Identity = 22/36 (61.11%), Postives = 31/36 (86.11%), Query Frame = 0
Query:   52 GFTAYSEILNGRAAMLGLMLAIVTEAITGKGILGQL 87
            GF+A+SE  NGR AM+G  LA++TEA+TG+GI+GQ+
Sbjct:    9 GFSAFSETWNGRLAMIGFTLALITEALTGEGIIGQI 44          
The following BLAST results are available for this feature:
BLAST of Gcaud1540.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A2V3IYN0_9FLOR1.530e-4679.41Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IYF7_9FLOR7.610e-2453.47Uncharacterized protein n=2 Tax=Gracilariopsis cho... [more]
B0BZB4_ACAM11.610e-871.05High light inducible protein n=1 Tax=Acaryochloris... [more]
UPI0002483FDE2.670e-766.67chlorophyll a/b-binding protein n=1 Tax=Acaryochlo... [more]
B0C5W4_ACAM13.860e-763.16High light inducible protein n=2 Tax=Acaryochlorid... [more]
A0A8J6QE11_9CYAN4.650e-756.86Uncharacterized protein n=1 Tax=Vulcanococcus sp. ... [more]
B0CET4_ACAM15.350e-758.97High light inducible protein n=2 Tax=Acaryochlorid... [more]
A0A4P7ZQM1_9SYNE7.910e-757.14Uncharacterized protein n=1 Tax=Synechococcus sp. ... [more]
A0A2T1LYU0_9CHRO1.390e-657.78High light inducible protein n=2 Tax=Chroococcales... [more]
A8ZP27_ACAM12.150e-661.11Conserved domain protein n=1 Tax=Acaryochloris mar... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022796Chlorophyll A-B binding proteinPFAMPF00504Chloroa_b-bindcoord: 53..82
e-value: 3.1E-5
score: 24.6
NoneNo IPR availableGENE3D1.10.3460.10Chlorophyll a/b binding protein domaincoord: 4..100
e-value: 3.7E-7
score: 32.4
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 10..14
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..9
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..14
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 15..102
NoneNo IPR availableSUPERFAMILY103511Chlorophyll a-b binding proteincoord: 42..89

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_717_length_19191_cov_4.160366contigNODE_717_length_19191_cov_4.160366:7371..7679 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1540.t1Gcaud1540.t1Gracilaria caudata M_176_S67 malemRNANODE_717_length_19191_cov_4.160366 7371..7679 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1540.t1 ID=Gcaud1540.t1|Name=Gcaud1540.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=103bp
MVSTAFVSATPVLARATPSLTTTSFTSRRTVVVPARRSATVMMADKEKIP
QGFTAYSEILNGRAAMLGLMLAIVTEAITGKGILGQLAALGDVSSITNAL
GL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022796Chloroa_b-bind