Gcaud1438.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1438.t1
Unique NameGcaud1438.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length111
Homology
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BLAST of Gcaud1438.t1 vs. uniprot
Match: A0A2V3ITD9_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ITD9_9FLOR)

HSP 1 Score: 152 bits (385), Expect = 5.620e-46
Identity = 87/111 (78.38%), Postives = 103/111 (92.79%), Query Frame = 0 
Query:    1 MVQAPLSRRSVLQLAAFSVVGVATAAIA-SDIDIKELKEDIKELDYEEEVTEVGPDPAEKNITRIRKKEAEPAYKIEERELEKEEKEDYEAMLKREAEEDARIKAKFSKSN 110
            MV APLSRRSVLQ AAFS+ G+A+AA+A S+IDIKELKED+KEL+Y+EEVTEVGPDP EKNITRI+KKE EP+YK+EEREL KEE+E+Y+AM+K+EAEEDARIKAKFSK N
Sbjct:    1 MVHAPLSRRSVLQAAAFSLAGIASAALAASNIDIKELKEDVKELEYDEEVTEVGPDPVEKNITRIKKKELEPSYKVEERELIKEEEEEYKAMVKKEAEEDARIKAKFSKPN 111
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BLAST of Gcaud1438.t1 vs. uniprot
Match: A0A1X6NWZ9_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NWZ9_PORUM)

HSP 1 Score: 59.3 bits (142), Expect = 8.450e-9
Identity = 33/77 (42.86%), Postives = 56/77 (72.73%), Query Frame = 0 
Query:   33 IKELKEDIKELDYEEEVTEVGPDPAEKNITRIRKKEAEPAYKIEERELEKEEKEDYEAMLKREAEEDARIKAKFSKS 109
            + ++K+ ++ LDYEEE  +VGPD  EK IT ++KK  +PAY+ + + + + E++ ++ M+ +E EE+A +KAKFSKS
Sbjct:   70 LSDIKKQVEALDYEEEFADVGPDVMEKEITNLKKKVKDPAYRAKLKAVVEAEEKKFDEMVAKEKEEEAVLKAKFSKS 146
The following BLAST results are available for this feature:
BLAST of Gcaud1438.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3ITD9_9FLOR5.620e-4678.38Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A1X6NWZ9_PORUM8.450e-942.86Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 66..98
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 21..28
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 10..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..9
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..28
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 29..110
IPR006311Twin-arginine translocation pathway, signal sequencePROSITEPS51318TATcoord: 1..28
score: 7.767643

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1082_length_14096_cov_4.305677contigNODE_1082_length_14096_cov_4.305677:10533..10865 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1438.t1Gcaud1438.t1Gracilaria caudata M_176_S67 malemRNANODE_1082_length_14096_cov_4.305677 10533..10865 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1438.t1 ID=Gcaud1438.t1|Name=Gcaud1438.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=111bp
MVQAPLSRRSVLQLAAFSVVGVATAAIASDIDIKELKEDIKELDYEEEVT
EVGPDPAEKNITRIRKKEAEPAYKIEERELEKEEKEDYEAMLKREAEEDA
RIKAKFSKSN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006311TAT_signal