Gcaud1420.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gcaud1420.t1
Unique Name	Gcaud1420.t1
Type	polypeptide
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	367

Homology

[Close]

BLAST of Gcaud1420.t1 vs. uniprot
Match: A0A2V3J175_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J175_9FLOR)

HSP 1 Score: 601 bits (1549), Expect = 6.060e-215
Identity = 295/356 (82.87%), Postives = 329/356 (92.42%), Query Frame = 0

Query:    1 MKANGARKELRMLVLVALAAITSSVSLFYALSRPALDVERLESRLRLIEQYARAGADVPPLPAPVVTAVGGGSSFQKRLVFYNRPPKTGSTTVRIAVKRALDDQQLKAAKCFNMIEWNEMGLKTIINRRDVDFYGCHTRMTKDRYEFVSRMRGGNVTFITNTREPKNIILSAYLQENRERKVADITDEKEMQEEIERYKEHLERYPVDALYRYHGADVPLTSCPAEWVHEDAMRRVAERYEVVIDLSRPEESTAMMEAVTGLRPDFTGHFNERTTDTSGKMLSALKDIDTSHKTCGNELVHKVLMQQYNIIKDRLMQNRCFDEDSGAFSLCEKAVLKKEEIMERTRKESYAAREAL 356
            MKA   R+E+RML LVALAA+ S+VSLFY+LSRPALDVERLESRLRLIEQYARAGADVPP PAP+VT V    S QKRL+FYNRPPKTGSTTVRIAVKRALD+++++AAKCFNMIEWNEMGLKTII+RRDVDFYGCHTR+T +RY+FVSR+RGGNVTF+TNTREP NI+LSAYLQ NR+R VADITD  EM +EIERYK+H+E YPVDALYRYHGA VPLT CP EWVHEDAMR +AERYEVVIDLSRPEESTAMME VTGLRPDFTGH+NERTTDTSGKML+ALK+IDTSHKTCGNELVHKVLMQQ+NIIKDRLMQNRCFDEDSG ++LCEKAVLKKE+I ER+R+ESYAAR+AL
Sbjct:    1 MKAAAPRREMRMLALVALAAVASTVSLFYSLSRPALDVERLESRLRLIEQYARAGADVPPPPAPIVTTVPSAHSSQKRLIFYNRPPKTGSTTVRIAVKRALDEREMRAAKCFNMIEWNEMGLKTIIHRRDVDFYGCHTRLTTERYDFVSRLRGGNVTFVTNTREPSNIVLSAYLQANRDRNVADITDPAEMDKEIERYKQHVESYPVDALYRYHGASVPLTKCPHEWVHEDAMRAIAERYEVVIDLSRPEESTAMMETVTGLRPDFTGHYNERTTDTSGKMLTALKNIDTSHKTCGNELVHKVLMQQFNIIKDRLMQNRCFDEDSGGYTLCEKAVLKKEDITERSRQESYAARDAL 356

[Close]

BLAST of Gcaud1420.t1 vs. uniprot
Match: A0A2V3IZP3_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IZP3_9FLOR)

HSP 1 Score: 367 bits (942), Expect = 7.500e-123
Identity = 185/292 (63.36%), Postives = 227/292 (77.74%), Query Frame = 0

Query:   70 GGGSSFQKRLVFYNRPPKTGSTTVRIAVKRALDDQQLKAAKCFNMIEWNEMGLKTIINRRDVDFYGCHTRMTKDRYEFVSRMRGGNVTFITNTREPKNIILSAYLQENRERKVADITDEKEMQEEIERYKEHLERYPVDALYRYHGA-DV-PLTSCPAEWVHEDAMRRVAERYEVVIDLSRPEESTAMMEAVTGLRPDFTGHFNERTTDTSGKMLSALKDIDTSHKTCGNELVHKVLMQQYNIIKDRLMQNRCFDEDSGAFSLCEKAVLKKEEIMERTRKESYAAREALSQM 359
            G  S   KRL+FYNRPPKTGST+VRIA+K AL+   + AAKCFNMIEWNEM L+TIINRR+VDFYGCHTR+  DR+  +S+MRGGNVTF+T+TRE  +I+LSAYLQ+ R+R+VADIT +KEM EEI RYK+ +E+YPVDALY YHGA D+  L+SCP  W H  AMRR+AERYE+V+DL + +ES  M+EAVTGL+PD    +NERT   S  ML  L  IDTSHKTCGNELVH+VL  Q+N+IKDRLMQNRCFDE S +  LC++  L  + I ER R ES  AR+AL ++
Sbjct:   62 GAHSPHTKRLLFYNRPPKTGSTSVRIAMKNALNKDNMVAAKCFNMIEWNEMALRTIINRRNVDFYGCHTRLVPDRFRDISQMRGGNVTFMTSTREASDIVLSAYLQDQRDRRVADITGKKEMDEEIARYKKFVEKYPVDALYAYHGAGDIHKLSSCPVSWQHTLAMRRIAERYEIVVDLEKADESAVMVEAVTGLKPDLNLFYNERTKQKS-PMLDKLGAIDTSHKTCGNELVHEVLTMQFNVIKDRLMQNRCFDEGSASAHLCDRIKLTADSIAERGRLESMKARDALKKL 352

The following BLAST results are available for this feature:

BLAST of Gcaud1420.t1 vs. uniprot

BLAST of Gcaud1420.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A2V3J175_9FLOR	6.060e-215	82.87	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]
A0A2V3IZP3_9FLOR	7.500e-123	63.36	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 75..343 e-value: 3.5E-11 score: 44.9
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 75..215
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..32
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..12
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 29..32
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 33..366
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 13..28
None	No IPR available	TMHMM	TMhelix		coord: 12..31

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_653_length_20221_cov_4.515748	contig	NODE_653_length_20221_cov_4.515748:12263..13363 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1420.t1	Gcaud1420.t1	Gracilaria caudata M_176_S67 male	mRNA	NODE_653_length_20221_cov_4.515748 12263..13363 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gcaud1420.t1 ID=Gcaud1420.t1|Name=Gcaud1420.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=367bp
MKANGARKELRMLVLVALAAITSSVSLFYALSRPALDVERLESRLRLIEQ
YARAGADVPPLPAPVVTAVGGGSSFQKRLVFYNRPPKTGSTTVRIAVKRA
LDDQQLKAAKCFNMIEWNEMGLKTIINRRDVDFYGCHTRMTKDRYEFVSR
MRGGNVTFITNTREPKNIILSAYLQENRERKVADITDEKEMQEEIERYKE
HLERYPVDALYRYHGADVPLTSCPAEWVHEDAMRRVAERYEVVIDLSRPE
ESTAMMEAVTGLRPDFTGHFNERTTDTSGKMLSALKDIDTSHKTCGNELV
HKVLMQQYNIIKDRLMQNRCFDEDSGAFSLCEKAVLKKEEIMERTRKESY
AAREALSQMGGSTDAA*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR027417	P-loop_NTPase