g2874.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	g2874.t1
Unique Name	g2874.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	227

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_169_length_41188_cov_4.653503	contig	NODE_169_length_41188_cov_4.653503:24041..24893 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
g2874	g2874	Gracilaria caudata M_176_S67 male	gene	NODE_169_length_41188_cov_4.653503 24041..24893 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
g2874.t1	g2874.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_169_length_41188_cov_4.653503 24041..24893 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
g2874.t1.start1	g2874.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_169_length_41188_cov_4.653503 24041..24043 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
g2874.t1.CDS1	g2874.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_169_length_41188_cov_4.653503 24041..24700 +
g2874.t1.CDS2	g2874.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_169_length_41188_cov_4.653503 24873..24893 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
g2874.t1.exon1	g2874.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_169_length_41188_cov_4.653503 24041..24700 +
g2874.t1.exon2	g2874.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_169_length_41188_cov_4.653503 24041..24700 +
g2874.t1.exon3	g2874.t1.exon3	Gracilaria caudata M_176_S67 male	exon	NODE_169_length_41188_cov_4.653503 24873..24893 +
g2874.t1.exon4	g2874.t1.exon4	Gracilaria caudata M_176_S67 male	exon	NODE_169_length_41188_cov_4.653503 24873..24893 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
g2874.t1.intron1	g2874.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_169_length_41188_cov_4.653503 24701..24872 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
g2874.t1.stop1	g2874.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_169_length_41188_cov_4.653503 24891..24893 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_169_length_41188_cov_4.653503:24041..24893+
coding sequence from alignment at NODE_169_length_41188_cov_4.653503:24041..24893+

mRNA sequence

>g2874.t1 ID=g2874.t1|Name=g2874.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=227bp
MFYKARSGQLNNQLISFFNALTIAKESNAVLVSPFAFYGSESYIDYAKSR
GFFYHLYEAYDLYVYQRFLKLLGLFYKHDELVGDYLDGSLLNKTQPVVSI
MDFLRSPGADYLRTFPHVLARKGDAPFYYMSLGKRSLFESSVNMRGQASK
SDPDSALSSPSSRRELDCNFNASDYFRGLPYFAGVNGNYLFLSRLYRSHS
LNCTGSNPYWLELRKYVQPRRIRLAP*

spliced messenger RNA

>g2874.t1 ID=g2874.t1|Name=g2874.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1362bp|location=Sequence derived from alignment at NODE_169_length_41188_cov_4.653503:24041..24893+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTTACAAAGCACGAAGCGGTCAACTTAACAACCAGCTCATTTCATT
TTTCAACGCTTTGACGATTGCAAAAGAGTCAAATGCCGTTCTGGTTTCCC
CGTTCGCCTTTTATGGCTCTGAATCTTATATAGATTATGCGAAATCTCGC
GGCTTCTTCTACCATTTGTACGAGGCTTATGATCTGTACGTTTATCAGCG
TTTCCTTAAGCTTTTGGGTCTCTTTTACAAGCATGACGAACTAGTCGGCG
ACTATCTCGATGGTTCTCTGTTGAATAAGACGCAACCAGTGGTGAGCATC
ATGGATTTCCTTCGTTCGCCAGGAGCAGACTATCTCAGAACATTTCCTCA
CGTATTGGCACGGAAAGGCGACGCGCCGTTCTATTACATGTCGCTGGGGA
AAAGGAGTTTGTTTGAATCCAGTGTCAACATGCGAGGTCAAGCTTCCAAG
AGCGATCCAGATTCGGCATTGTCAAGCCCTTCCAGTCGCCGAGAGCTCGA
TTGCAATTTCAATGCTTCTGATTACTTTCGGGGACTACCATACTTTGCCG
GTGTGAACGGTAACTATTTGTTCTTATCTCGCTTATATCGAAGCCATTCT
CTTAACTGTACCGGTTCAAATCCGTATTGGTTGGAGCTTCGTAAATATGT
CCAGCCCCGGATGTTTTACAAAGCACGAAGCGGTCAACTTAACAACCAGC
TCATTTCATTTTTCAACGCTTTGACGATTGCAAAAGAGTCAAATGCCGTT
CTGGTTTCCCCGTTCGCCTTTTATGGCTCTGAATCTTATATAGATTATGC
GAAATCTCGCGGCTTCTTCTACCATTTGTACGAGGCTTATGATCTGTACG
TTTATCAGCGTTTCCTTAAGCTTTTGGGTCTCTTTTACAAGCATGACGAA
CTAGTCGGCGACTATCTCGATGGTTCTCTGTTGAATAAGACGCAACCAGT
GGTGAGCATCATGGATTTCCTTCGTTCGCCAGGAGCAGACTATCTCAGAA
CATTTCCTCACGTATTGGCACGGAAAGGCGACGCGCCGTTCTATTACATG
TCGCTGGGGAAAAGGAGTTTGTTTGAATCCAGTGTCAACATGCGAGGTCA
AGCTTCCAAGAGCGATCCAGATTCGGCATTGTCAAGCCCTTCCAGTCGCC
GAGAGCTCGATTGCAATTTCAATGCTTCTGATTACTTTCGGGGACTACCA
TACTTTGCCGGTGTGAACGGTAACTATTTGTTCTTATCTCGCTTATATCG
AAGCCATTCTCTTAACTGTACCGGTTCAAATCCGTATTGGTTGGAGCTTC
GTAAATATGTCCAGCCCCGGCGTATTCGGTTAGCTCCCTAGCGTATTCGG
TTAGCTCCCTAG

protein sequence of g2874.t1

>g2874.t1 ID=g2874.t1|Name=g2874.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=227bp
MFYKARSGQLNNQLISFFNALTIAKESNAVLVSPFAFYGSESYIDYAKSR
GFFYHLYEAYDLYVYQRFLKLLGLFYKHDELVGDYLDGSLLNKTQPVVSI
MDFLRSPGADYLRTFPHVLARKGDAPFYYMSLGKRSLFESSVNMRGQASK
SDPDSALSSPSSRRELDCNFNASDYFRGLPYFAGVNGNYLFLSRLYRSHS
LNCTGSNPYWLELRKYVQPRRIRLAP*

mRNA from alignment at NODE_169_length_41188_cov_4.653503:24041..24893+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>g2874.t1 ID=g2874.t1|Name=g2874.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=853bp|location=Sequence derived from alignment at NODE_169_length_41188_cov_4.653503:24041..24893+ (Gracilaria caudata M_176_S67 male)
ATGTTTTACAAAGCACGAAGCGGTCAACTTAACAACCAGCTCATTTCATT
TTTCAACGCTTTGACGATTGCAAAAGAGTCAAATGCCGTTCTGGTTTCCC
CGTTCGCCTTTTATGGCTCTGAATCTTATATAGATTATGCGAAATCTCGC
GGCTTCTTCTACCATTTGTACGAGGCTTATGATCTGTACGTTTATCAGCG
TTTCCTTAAGCTTTTGGGTCTCTTTTACAAGCATGACGAACTAGTCGGCG
ACTATCTCGATGGTTCTCTGTTGAATAAGACGCAACCAGTGGTGAGCATC
ATGGATTTCCTTCGTTCGCCAGGAGCAGACTATCTCAGAACATTTCCTCA
CGTATTGGCACGGAAAGGCGACGCGCCGTTCTATTACATGTCGCTGGGGA
AAAGGAGTTTGTTTGAATCCAGTGTCAACATGCGAGGTCAAGCTTCCAAG
AGCGATCCAGATTCGGCATTGTCAAGCCCTTCCAGTCGCCGAGAGCTCGA
TTGCAATTTCAATGCTTCTGATTACTTTCGGGGACTACCATACTTTGCCG
GTGTGAACGGTAACTATTTGTTCTTATCTCGCTTATATCGAAGCCATTCT
CTTAACTGTACCGGTTCAAATCCGTATTGGTTGGAGCTTCGTAAATATGT
CCAGCCCCGGGTCGAAATACGCTCCTTGGTGGATCAATATCTTGCTCATT
GGGGCAAGGTAACATCCGTTCACTTACGACTGTTTCCGTTTGATCTCGGG
AAGTTTTCAAGATCAACTTTTTGCAACCACTTTCTTGCACGTTTCGAAAA
GCAGATCAAAGAATCTGATGTGATCTACGTAGCGTATTCGGTTAGCTCCC
TAG

Coding sequence (CDS) from alignment at NODE_169_length_41188_cov_4.653503:24041..24893+

>g2874.t1 ID=g2874.t1|Name=g2874.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=681bp|location=Sequence derived from alignment at NODE_169_length_41188_cov_4.653503:24041..24893+ (Gracilaria caudata M_176_S67 male)
ATGTTTTACAAAGCACGAAGCGGTCAACTTAACAACCAGCTCATTTCATT
TTTCAACGCTTTGACGATTGCAAAAGAGTCAAATGCCGTTCTGGTTTCCC
CGTTCGCCTTTTATGGCTCTGAATCTTATATAGATTATGCGAAATCTCGC
GGCTTCTTCTACCATTTGTACGAGGCTTATGATCTGTACGTTTATCAGCG
TTTCCTTAAGCTTTTGGGTCTCTTTTACAAGCATGACGAACTAGTCGGCG
ACTATCTCGATGGTTCTCTGTTGAATAAGACGCAACCAGTGGTGAGCATC
ATGGATTTCCTTCGTTCGCCAGGAGCAGACTATCTCAGAACATTTCCTCA
CGTATTGGCACGGAAAGGCGACGCGCCGTTCTATTACATGTCGCTGGGGA
AAAGGAGTTTGTTTGAATCCAGTGTCAACATGCGAGGTCAAGCTTCCAAG
AGCGATCCAGATTCGGCATTGTCAAGCCCTTCCAGTCGCCGAGAGCTCGA
TTGCAATTTCAATGCTTCTGATTACTTTCGGGGACTACCATACTTTGCCG
GTGTGAACGGTAACTATTTGTTCTTATCTCGCTTATATCGAAGCCATTCT
CTTAACTGTACCGGTTCAAATCCGTATTGGTTGGAGCTTCGTAAATATGT
CCAGCCCCGGCGTATTCGGTTAGCTCCCTAG