Gcaud9985.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud9985.t1
Unique Name	Gcaud9985.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	303

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_132_length_45408_cov_4.668756	contig	NODE_132_length_45408_cov_4.668756:11300..12208 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005706306.1
PFAMs	PP2C
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K01090,ko:K19704
KEGG Pathway	ko04011,map04011
GOs	GO:0000001,GO:0000173,GO:0000188,GO:0000394,GO:0000749,GO:0000750,GO:0001932,GO:0001933,GO:0003674,GO:0003824,GO:0004721,GO:0004722,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006388,GO:0006396,GO:0006399,GO:0006464,GO:0006469,GO:0006470,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006970,GO:0006996,GO:0007005,GO:0007154,GO:0007165,GO:0007186,GO:0007231,GO:0008033,GO:0008150,GO:0008152,GO:0008380,GO:0009628,GO:0009892,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010467,GO:0010563,GO:0010605,GO:0010646,GO:0010648,GO:0016043,GO:0016070,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019220,GO:0019222,GO:0019236,GO:0019538,GO:0023051,GO:0023052,GO:0023057,GO:0031136,GO:0031137,GO:0031139,GO:0031323,GO:0031324,GO:0031399,GO:0031400,GO:0032005,GO:0032268,GO:0032269,GO:0033554,GO:0033673,GO:0034470,GO:0034641,GO:0034660,GO:0036211,GO:0042221,GO:0042325,GO:0042326,GO:0042578,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043405,GO:0043407,GO:0043408,GO:0043409,GO:0043412,GO:0043549,GO:0043900,GO:0043902,GO:0044092,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0045859,GO:0045936,GO:0046483,GO:0046999,GO:0048308,GO:0048311,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051174,GO:0051179,GO:0051246,GO:0051248,GO:0051338,GO:0051348,GO:0051640,GO:0051641,GO:0051646,GO:0051716,GO:0060255,GO:0065007,GO:0065009,GO:0070887,GO:0071214,GO:0071310,GO:0071444,GO:0071470,GO:0071704,GO:0071840,GO:0071900,GO:0071901,GO:0080090,GO:0090304,GO:0104004,GO:0140096,GO:1901360,GO:1901564,GO:1902531,GO:1902532,GO:2000241,GO:2000243
Evalue	7.97e-51
EggNOG OGs	COG0631@1\|root,KOG0698@2759\|Eukaryota
EC	3.1.3.16
Description	protein serine/threonine phosphatase activity
COG category	T
BRITE	ko00000,ko00001,ko01000,ko01009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9985	Gcaud9985	Gracilaria caudata M_176_S67 male	gene	NODE_132_length_45408_cov_4.668756 11300..12208 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9985.t1.start1	Gcaud9985.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_132_length_45408_cov_4.668756 11300..11302 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9985.t1.CDS1	Gcaud9985.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_132_length_45408_cov_4.668756 11300..12208 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9985.t1.exon1	Gcaud9985.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_132_length_45408_cov_4.668756 11300..12208 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9985.t1.stop1	Gcaud9985.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_132_length_45408_cov_4.668756 12206..12208 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9985.t1	Gcaud9985.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_132_length_45408_cov_4.668756 11300..12208 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_132_length_45408_cov_4.668756:11300..12208+
coding sequence from alignment at NODE_132_length_45408_cov_4.668756:11300..12208+

mRNA sequence

>Gcaud9985.t1 ID=Gcaud9985.t1|Name=Gcaud9985.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=303bp
MEDEMVVEQYTQFPALFVAVYDGHGGKLASTLLRQLLHRFFLDEILRHQP
ALVMRAHLSPTDDNVRLPIALPSTPSDSDSESCNHPCSIPDALSLDHNPI
KPSYHLHNIDATSAFTRAYAQMDSMLKLRNCSRVGATAVTCFLRTIPDVG
RILTTANCGDSRAVLCRGGRPVRLSEDHRPVDKAERKRIEDAGGFVAWSR
VNGVLNVSRAFGDHCMKSVVVSTPSVSEIVLDGADEFMVLACDGLWDFVE
ERSVIATAHEAFEQGMCSEQVAKVLVKEALQCGSTDNVSVMVVHFDDLEY
EQ*

spliced messenger RNA

>Gcaud9985.t1 ID=Gcaud9985.t1|Name=Gcaud9985.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=909bp|location=Sequence derived from alignment at NODE_132_length_45408_cov_4.668756:11300..12208+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGACGAGATGGTAGTGGAGCAGTACACGCAATTCCCCGCCCTTTT
CGTGGCCGTGTACGATGGACACGGGGGTAAATTAGCGTCCACACTTCTTC
GTCAGCTTCTTCATCGATTCTTCCTCGACGAGATATTACGTCATCAACCC
GCGCTCGTCATGCGCGCACATCTGTCTCCCACTGATGATAACGTGCGTCT
TCCTATCGCGCTTCCCTCCACACCGTCTGATTCTGATTCCGAGAGCTGCA
ATCATCCATGTTCCATCCCCGACGCGCTCAGTCTCGACCACAACCCCATC
AAACCGTCGTATCATCTGCACAACATTGATGCCACTTCCGCCTTCACTCG
CGCATACGCTCAGATGGACTCCATGTTGAAGCTGCGCAACTGCAGTCGAG
TAGGCGCAACAGCCGTCACCTGTTTCTTGCGCACCATTCCGGACGTGGGC
AGGATTCTCACCACCGCCAACTGCGGTGACTCGCGCGCGGTGCTTTGTCG
GGGCGGACGTCCCGTGCGTCTGTCCGAAGACCATCGACCAGTGGACAAGG
CGGAACGGAAGCGCATCGAAGACGCGGGCGGCTTTGTGGCGTGGTCTAGA
GTAAATGGCGTGCTGAACGTGTCGAGAGCATTTGGCGACCATTGCATGAA
GAGTGTGGTGGTCTCCACGCCGTCTGTGAGCGAGATTGTTCTTGATGGCG
CCGATGAATTTATGGTGCTTGCTTGTGATGGCCTGTGGGATTTTGTGGAA
GAGAGAAGTGTGATTGCGACGGCGCATGAGGCGTTTGAGCAGGGAATGTG
TTCTGAACAGGTTGCCAAGGTGCTTGTGAAGGAAGCTTTGCAATGCGGCA
GTACGGACAATGTATCTGTCATGGTAGTACACTTTGACGATTTGGAATAC
GAACAGTGA

protein sequence of Gcaud9985.t1

>Gcaud9985.t1 ID=Gcaud9985.t1|Name=Gcaud9985.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=303bp
MEDEMVVEQYTQFPALFVAVYDGHGGKLASTLLRQLLHRFFLDEILRHQP
ALVMRAHLSPTDDNVRLPIALPSTPSDSDSESCNHPCSIPDALSLDHNPI
KPSYHLHNIDATSAFTRAYAQMDSMLKLRNCSRVGATAVTCFLRTIPDVG
RILTTANCGDSRAVLCRGGRPVRLSEDHRPVDKAERKRIEDAGGFVAWSR
VNGVLNVSRAFGDHCMKSVVVSTPSVSEIVLDGADEFMVLACDGLWDFVE
ERSVIATAHEAFEQGMCSEQVAKVLVKEALQCGSTDNVSVMVVHFDDLEY
EQ*

mRNA from alignment at NODE_132_length_45408_cov_4.668756:11300..12208+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud9985.t1 ID=Gcaud9985.t1|Name=Gcaud9985.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=909bp|location=Sequence derived from alignment at NODE_132_length_45408_cov_4.668756:11300..12208+ (Gracilaria caudata M_176_S67 male)
ATGGAGGACGAGATGGTAGTGGAGCAGTACACGCAATTCCCCGCCCTTTT
CGTGGCCGTGTACGATGGACACGGGGGTAAATTAGCGTCCACACTTCTTC
GTCAGCTTCTTCATCGATTCTTCCTCGACGAGATATTACGTCATCAACCC
GCGCTCGTCATGCGCGCACATCTGTCTCCCACTGATGATAACGTGCGTCT
TCCTATCGCGCTTCCCTCCACACCGTCTGATTCTGATTCCGAGAGCTGCA
ATCATCCATGTTCCATCCCCGACGCGCTCAGTCTCGACCACAACCCCATC
AAACCGTCGTATCATCTGCACAACATTGATGCCACTTCCGCCTTCACTCG
CGCATACGCTCAGATGGACTCCATGTTGAAGCTGCGCAACTGCAGTCGAG
TAGGCGCAACAGCCGTCACCTGTTTCTTGCGCACCATTCCGGACGTGGGC
AGGATTCTCACCACCGCCAACTGCGGTGACTCGCGCGCGGTGCTTTGTCG
GGGCGGACGTCCCGTGCGTCTGTCCGAAGACCATCGACCAGTGGACAAGG
CGGAACGGAAGCGCATCGAAGACGCGGGCGGCTTTGTGGCGTGGTCTAGA
GTAAATGGCGTGCTGAACGTGTCGAGAGCATTTGGCGACCATTGCATGAA
GAGTGTGGTGGTCTCCACGCCGTCTGTGAGCGAGATTGTTCTTGATGGCG
CCGATGAATTTATGGTGCTTGCTTGTGATGGCCTGTGGGATTTTGTGGAA
GAGAGAAGTGTGATTGCGACGGCGCATGAGGCGTTTGAGCAGGGAATGTG
TTCTGAACAGGTTGCCAAGGTGCTTGTGAAGGAAGCTTTGCAATGCGGCA
GTACGGACAATGTATCTGTCATGGTAGTACACTTTGACGATTTGGAATAC
GAACAGTGA

Coding sequence (CDS) from alignment at NODE_132_length_45408_cov_4.668756:11300..12208+

>Gcaud9985.t1 ID=Gcaud9985.t1|Name=Gcaud9985.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=909bp|location=Sequence derived from alignment at NODE_132_length_45408_cov_4.668756:11300..12208+ (Gracilaria caudata M_176_S67 male)
ATGGAGGACGAGATGGTAGTGGAGCAGTACACGCAATTCCCCGCCCTTTT
CGTGGCCGTGTACGATGGACACGGGGGTAAATTAGCGTCCACACTTCTTC
GTCAGCTTCTTCATCGATTCTTCCTCGACGAGATATTACGTCATCAACCC
GCGCTCGTCATGCGCGCACATCTGTCTCCCACTGATGATAACGTGCGTCT
TCCTATCGCGCTTCCCTCCACACCGTCTGATTCTGATTCCGAGAGCTGCA
ATCATCCATGTTCCATCCCCGACGCGCTCAGTCTCGACCACAACCCCATC
AAACCGTCGTATCATCTGCACAACATTGATGCCACTTCCGCCTTCACTCG
CGCATACGCTCAGATGGACTCCATGTTGAAGCTGCGCAACTGCAGTCGAG
TAGGCGCAACAGCCGTCACCTGTTTCTTGCGCACCATTCCGGACGTGGGC
AGGATTCTCACCACCGCCAACTGCGGTGACTCGCGCGCGGTGCTTTGTCG
GGGCGGACGTCCCGTGCGTCTGTCCGAAGACCATCGACCAGTGGACAAGG
CGGAACGGAAGCGCATCGAAGACGCGGGCGGCTTTGTGGCGTGGTCTAGA
GTAAATGGCGTGCTGAACGTGTCGAGAGCATTTGGCGACCATTGCATGAA
GAGTGTGGTGGTCTCCACGCCGTCTGTGAGCGAGATTGTTCTTGATGGCG
CCGATGAATTTATGGTGCTTGCTTGTGATGGCCTGTGGGATTTTGTGGAA
GAGAGAAGTGTGATTGCGACGGCGCATGAGGCGTTTGAGCAGGGAATGTG
TTCTGAACAGGTTGCCAAGGTGCTTGTGAAGGAAGCTTTGCAATGCGGCA
GTACGGACAATGTATCTGTCATGGTAGTACACTTTGACGATTTGGAATAC
GAACAGTGA