Gcaud997.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud997.t1
Unique NameGcaud997.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length176
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2982_length_4276_cov_3.347909contigNODE_2982_length_4276_cov_3.347909:1250..1777 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1396141.BATP01000038_gene1189
PFAMsLaminin_G_3,Malectin
Max annot lvl203494|Verrucomicrobiae
Evalue1.69e-10
EggNOG OGsCOG2982@1|root,COG3227@1|root,COG3291@1|root,COG2982@2|Bacteria,COG3227@2|Bacteria,COG3291@2|Bacteria,46TIB@74201|Verrucomicrobia,2IVWU@203494|Verrucomicrobiae
DescriptionCarbohydrate-binding protein of the ER
COG categoryM
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud997Gcaud997Gracilaria caudata M_176_S67 malegeneNODE_2982_length_4276_cov_3.347909 1250..1777 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud997.t1.stop1Gcaud997.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_2982_length_4276_cov_3.347909 1250..1252 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud997.t1.CDS1Gcaud997.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_2982_length_4276_cov_3.347909 1250..1777 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud997.t1.exon1Gcaud997.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_2982_length_4276_cov_3.347909 1250..1777 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud997.t1.start1Gcaud997.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_2982_length_4276_cov_3.347909 1775..1777 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud997.t1Gcaud997.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_2982_length_4276_cov_3.347909 1250..1777 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud997.t1 ID=Gcaud997.t1|Name=Gcaud997.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=176bp
MKIAGFLSLFLAVVSTVQSQTLLLNVGGPDLPDIGFVADPTSNLLSSASA
TVSLPANTVPLNSSWAPIYSSYRYAFGGNLAYRFALDDGTYSVSLAFAET
YAPTFFAGARQFDVVINGVVHFARLDVFATVGANRALYLNVRDVRVVGGS
LSVQMRRIEGRQNPFLSAMVVRPLA*
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spliced messenger RNA

>Gcaud997.t1 ID=Gcaud997.t1|Name=Gcaud997.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=528bp|location=Sequence derived from alignment at NODE_2982_length_4276_cov_3.347909:1250..1777- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAATCGCAGGCTTCCTATCTCTGTTCCTCGCCGTGGTTTCCACAGT
TCAAAGCCAGACTCTGTTGCTCAATGTAGGCGGACCAGATCTCCCGGACA
TCGGCTTCGTGGCAGACCCCACCTCAAACCTGCTCTCCAGCGCCTCCGCA
ACAGTGTCGCTGCCCGCCAACACCGTGCCGCTCAACTCGTCGTGGGCGCC
CATCTACTCCAGCTACCGCTATGCGTTTGGCGGCAATCTGGCGTACCGCT
TCGCGCTGGACGACGGCACCTACTCCGTCTCGCTGGCGTTCGCGGAGACG
TATGCGCCGACGTTCTTCGCGGGCGCGCGGCAGTTCGACGTGGTGATCAA
CGGCGTGGTGCACTTTGCGCGGCTGGACGTGTTTGCCACGGTGGGCGCCA
ATCGCGCGCTGTACCTCAACGTGCGCGACGTGCGCGTGGTGGGCGGCTCG
CTCAGCGTGCAGATGCGGCGCATTGAGGGCCGGCAGAACCCGTTCCTGAG
CGCGATGGTGGTCAGGCCTTTGGCGTAA
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protein sequence of Gcaud997.t1

>Gcaud997.t1 ID=Gcaud997.t1|Name=Gcaud997.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=176bp
MKIAGFLSLFLAVVSTVQSQTLLLNVGGPDLPDIGFVADPTSNLLSSASA
TVSLPANTVPLNSSWAPIYSSYRYAFGGNLAYRFALDDGTYSVSLAFAET
YAPTFFAGARQFDVVINGVVHFARLDVFATVGANRALYLNVRDVRVVGGS
LSVQMRRIEGRQNPFLSAMVVRPLA*
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mRNA from alignment at NODE_2982_length_4276_cov_3.347909:1250..1777-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud997.t1 ID=Gcaud997.t1|Name=Gcaud997.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=528bp|location=Sequence derived from alignment at NODE_2982_length_4276_cov_3.347909:1250..1777- (Gracilaria caudata M_176_S67 male)
ATGAAAATCGCAGGCTTCCTATCTCTGTTCCTCGCCGTGGTTTCCACAGT
TCAAAGCCAGACTCTGTTGCTCAATGTAGGCGGACCAGATCTCCCGGACA
TCGGCTTCGTGGCAGACCCCACCTCAAACCTGCTCTCCAGCGCCTCCGCA
ACAGTGTCGCTGCCCGCCAACACCGTGCCGCTCAACTCGTCGTGGGCGCC
CATCTACTCCAGCTACCGCTATGCGTTTGGCGGCAATCTGGCGTACCGCT
TCGCGCTGGACGACGGCACCTACTCCGTCTCGCTGGCGTTCGCGGAGACG
TATGCGCCGACGTTCTTCGCGGGCGCGCGGCAGTTCGACGTGGTGATCAA
CGGCGTGGTGCACTTTGCGCGGCTGGACGTGTTTGCCACGGTGGGCGCCA
ATCGCGCGCTGTACCTCAACGTGCGCGACGTGCGCGTGGTGGGCGGCTCG
CTCAGCGTGCAGATGCGGCGCATTGAGGGCCGGCAGAACCCGTTCCTGAG
CGCGATGGTGGTCAGGCCTTTGGCGTAA
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Coding sequence (CDS) from alignment at NODE_2982_length_4276_cov_3.347909:1250..1777-

>Gcaud997.t1 ID=Gcaud997.t1|Name=Gcaud997.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=528bp|location=Sequence derived from alignment at NODE_2982_length_4276_cov_3.347909:1250..1777- (Gracilaria caudata M_176_S67 male)
ATGAAAATCGCAGGCTTCCTATCTCTGTTCCTCGCCGTGGTTTCCACAGT
TCAAAGCCAGACTCTGTTGCTCAATGTAGGCGGACCAGATCTCCCGGACA
TCGGCTTCGTGGCAGACCCCACCTCAAACCTGCTCTCCAGCGCCTCCGCA
ACAGTGTCGCTGCCCGCCAACACCGTGCCGCTCAACTCGTCGTGGGCGCC
CATCTACTCCAGCTACCGCTATGCGTTTGGCGGCAATCTGGCGTACCGCT
TCGCGCTGGACGACGGCACCTACTCCGTCTCGCTGGCGTTCGCGGAGACG
TATGCGCCGACGTTCTTCGCGGGCGCGCGGCAGTTCGACGTGGTGATCAA
CGGCGTGGTGCACTTTGCGCGGCTGGACGTGTTTGCCACGGTGGGCGCCA
ATCGCGCGCTGTACCTCAACGTGCGCGACGTGCGCGTGGTGGGCGGCTCG
CTCAGCGTGCAGATGCGGCGCATTGAGGGCCGGCAGAACCCGTTCCTGAG
CGCGATGGTGGTCAGGCCTTTGGCGTAA
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