Gcaud9969.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud9969.t1
Unique Name	Gcaud9969.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	244

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_502_length_23533_cov_4.649518	contig	NODE_502_length_23533_cov_4.649518:5087..5818 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	199306.XP_003069380.1
Preferred name	SIS1
PFAMs	DnaJ,DnaJ_C
Max annot lvl	4751\|Fungi
KEGG ko	ko:K09510
GOs	GO:0002181,GO:0002183,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005840,GO:0006403,GO:0006404,GO:0006412,GO:0006413,GO:0006457,GO:0006508,GO:0006511,GO:0006515,GO:0006518,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009987,GO:0010033,GO:0010467,GO:0010498,GO:0015031,GO:0015833,GO:0015931,GO:0015935,GO:0019538,GO:0019941,GO:0022626,GO:0022627,GO:0030163,GO:0030544,GO:0031072,GO:0032991,GO:0033036,GO:0033554,GO:0034613,GO:0034641,GO:0034645,GO:0035719,GO:0035966,GO:0035967,GO:0042221,GO:0042886,GO:0043043,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0043604,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0050657,GO:0050658,GO:0050896,GO:0051031,GO:0051082,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051236,GO:0051603,GO:0051641,GO:0051649,GO:0051716,GO:0051787,GO:0051788,GO:0070727,GO:0070843,GO:0070887,GO:0071218,GO:0071310,GO:0071630,GO:0071702,GO:0071704,GO:0071705,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1990904
Evalue	7.86e-13
EggNOG OGs	COG0484@1\|root,KOG0714@2759\|Eukaryota,38BTN@33154\|Opisthokonta,3NW97@4751\|Fungi,3QNCB@4890\|Ascomycota,20APE@147545\|Eurotiomycetes,3B1NI@33183\|Onygenales,3FNI5@34383\|Onygenales incertae sedis
Description	DnaJ C terminal domain
COG category	O
BRITE	ko00000,ko03110

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9969	Gcaud9969	Gracilaria caudata M_176_S67 male	gene	NODE_502_length_23533_cov_4.649518 5087..5818 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9969.t1.start1	Gcaud9969.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_502_length_23533_cov_4.649518 5087..5089 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9969.t1.CDS1	Gcaud9969.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_502_length_23533_cov_4.649518 5087..5818 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9969.t1.exon1	Gcaud9969.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_502_length_23533_cov_4.649518 5087..5818 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9969.t1.stop1	Gcaud9969.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_502_length_23533_cov_4.649518 5816..5818 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9969.t1	Gcaud9969.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_502_length_23533_cov_4.649518 5087..5818 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_502_length_23533_cov_4.649518:5087..5818+
coding sequence from alignment at NODE_502_length_23533_cov_4.649518:5087..5818+

mRNA sequence

>Gcaud9969.t1 ID=Gcaud9969.t1|Name=Gcaud9969.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=244bp
MYFSDFPCNRDVSYGTTFEHLLLSRASHAFKIDRRLRSTLPEVSCEMDEE
GKRLYRAIGFDPERQNVLELSQKDIARAYRKQALKWHPDRNRDDPTASHK
FSEIFLAYETLSSPNTRKKYDDAIQAGRKHRERLDRMDSVRRQFREALEK
EEKSGSLGGKRSSPLTEDALKRVQKEIEKLRREASEAAQNNGQLQKLDTK
NTGSPVLDVGPWAEVPGYSEFRDSGLSSFEDFERDVLDRKIPF*

spliced messenger RNA

>Gcaud9969.t1 ID=Gcaud9969.t1|Name=Gcaud9969.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=732bp|location=Sequence derived from alignment at NODE_502_length_23533_cov_4.649518:5087..5818+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTATTTTTCCGATTTTCCTTGCAATCGTGACGTAAGTTATGGAACTAC
CTTCGAACACCTGCTTCTTTCTCGCGCCTCCCATGCGTTCAAAATCGATA
GACGACTTCGCAGTACACTACCCGAGGTTTCATGTGAAATGGACGAAGAA
GGAAAAAGGCTGTATCGCGCTATTGGTTTTGACCCAGAGCGGCAGAATGT
CTTGGAATTGTCGCAAAAAGACATAGCTAGAGCATACCGAAAACAAGCGC
TCAAATGGCACCCAGATAGGAACAGGGACGACCCAACTGCTTCACACAAG
TTCTCCGAGATCTTTCTTGCGTACGAAACGCTGTCTTCTCCCAATACGAG
GAAGAAATATGATGATGCCATTCAGGCGGGGAGAAAGCATCGAGAACGTT
TGGATCGAATGGATTCAGTTCGACGTCAGTTCCGAGAGGCTTTGGAGAAA
GAGGAGAAAAGTGGCTCACTTGGTGGAAAAAGGTCTTCACCACTCACTGA
AGATGCATTGAAAAGAGTACAAAAGGAAATTGAGAAGCTTCGTCGGGAAG
CATCAGAGGCAGCCCAAAACAATGGCCAGCTCCAGAAACTGGATACGAAA
AACACTGGAAGCCCTGTGCTTGATGTAGGTCCCTGGGCTGAAGTTCCGGG
GTATTCCGAGTTTCGCGATTCCGGACTTTCAAGCTTCGAGGATTTTGAGC
GCGATGTTCTAGACCGAAAAATCCCATTTTAG

protein sequence of Gcaud9969.t1

>Gcaud9969.t1 ID=Gcaud9969.t1|Name=Gcaud9969.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=244bp
MYFSDFPCNRDVSYGTTFEHLLLSRASHAFKIDRRLRSTLPEVSCEMDEE
GKRLYRAIGFDPERQNVLELSQKDIARAYRKQALKWHPDRNRDDPTASHK
FSEIFLAYETLSSPNTRKKYDDAIQAGRKHRERLDRMDSVRRQFREALEK
EEKSGSLGGKRSSPLTEDALKRVQKEIEKLRREASEAAQNNGQLQKLDTK
NTGSPVLDVGPWAEVPGYSEFRDSGLSSFEDFERDVLDRKIPF*

mRNA from alignment at NODE_502_length_23533_cov_4.649518:5087..5818+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud9969.t1 ID=Gcaud9969.t1|Name=Gcaud9969.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=732bp|location=Sequence derived from alignment at NODE_502_length_23533_cov_4.649518:5087..5818+ (Gracilaria caudata M_176_S67 male)
ATGTATTTTTCCGATTTTCCTTGCAATCGTGACGTAAGTTATGGAACTAC
CTTCGAACACCTGCTTCTTTCTCGCGCCTCCCATGCGTTCAAAATCGATA
GACGACTTCGCAGTACACTACCCGAGGTTTCATGTGAAATGGACGAAGAA
GGAAAAAGGCTGTATCGCGCTATTGGTTTTGACCCAGAGCGGCAGAATGT
CTTGGAATTGTCGCAAAAAGACATAGCTAGAGCATACCGAAAACAAGCGC
TCAAATGGCACCCAGATAGGAACAGGGACGACCCAACTGCTTCACACAAG
TTCTCCGAGATCTTTCTTGCGTACGAAACGCTGTCTTCTCCCAATACGAG
GAAGAAATATGATGATGCCATTCAGGCGGGGAGAAAGCATCGAGAACGTT
TGGATCGAATGGATTCAGTTCGACGTCAGTTCCGAGAGGCTTTGGAGAAA
GAGGAGAAAAGTGGCTCACTTGGTGGAAAAAGGTCTTCACCACTCACTGA
AGATGCATTGAAAAGAGTACAAAAGGAAATTGAGAAGCTTCGTCGGGAAG
CATCAGAGGCAGCCCAAAACAATGGCCAGCTCCAGAAACTGGATACGAAA
AACACTGGAAGCCCTGTGCTTGATGTAGGTCCCTGGGCTGAAGTTCCGGG
GTATTCCGAGTTTCGCGATTCCGGACTTTCAAGCTTCGAGGATTTTGAGC
GCGATGTTCTAGACCGAAAAATCCCATTTTAG

Coding sequence (CDS) from alignment at NODE_502_length_23533_cov_4.649518:5087..5818+

>Gcaud9969.t1 ID=Gcaud9969.t1|Name=Gcaud9969.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=732bp|location=Sequence derived from alignment at NODE_502_length_23533_cov_4.649518:5087..5818+ (Gracilaria caudata M_176_S67 male)
ATGTATTTTTCCGATTTTCCTTGCAATCGTGACGTAAGTTATGGAACTAC
CTTCGAACACCTGCTTCTTTCTCGCGCCTCCCATGCGTTCAAAATCGATA
GACGACTTCGCAGTACACTACCCGAGGTTTCATGTGAAATGGACGAAGAA
GGAAAAAGGCTGTATCGCGCTATTGGTTTTGACCCAGAGCGGCAGAATGT
CTTGGAATTGTCGCAAAAAGACATAGCTAGAGCATACCGAAAACAAGCGC
TCAAATGGCACCCAGATAGGAACAGGGACGACCCAACTGCTTCACACAAG
TTCTCCGAGATCTTTCTTGCGTACGAAACGCTGTCTTCTCCCAATACGAG
GAAGAAATATGATGATGCCATTCAGGCGGGGAGAAAGCATCGAGAACGTT
TGGATCGAATGGATTCAGTTCGACGTCAGTTCCGAGAGGCTTTGGAGAAA
GAGGAGAAAAGTGGCTCACTTGGTGGAAAAAGGTCTTCACCACTCACTGA
AGATGCATTGAAAAGAGTACAAAAGGAAATTGAGAAGCTTCGTCGGGAAG
CATCAGAGGCAGCCCAAAACAATGGCCAGCTCCAGAAACTGGATACGAAA
AACACTGGAAGCCCTGTGCTTGATGTAGGTCCCTGGGCTGAAGTTCCGGG
GTATTCCGAGTTTCGCGATTCCGGACTTTCAAGCTTCGAGGATTTTGAGC
GCGATGTTCTAGACCGAAAAATCCCATTTTAG