Gcaud9965.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud9965.t1
Unique NameGcaud9965.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length253
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1884_length_7894_cov_4.416378contigNODE_1884_length_7894_cov_4.416378:4301..5097 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9965Gcaud9965Gracilaria caudata M_176_S67 malegeneNODE_1884_length_7894_cov_4.416378 4301..5097 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9965.t1Gcaud9965.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1884_length_7894_cov_4.416378 4301..5097 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9965.t1.start1Gcaud9965.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1884_length_7894_cov_4.416378 4301..4303 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9965.t1.CDS1Gcaud9965.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1884_length_7894_cov_4.416378 4301..4694 +
Gcaud9965.t1.CDS2Gcaud9965.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_1884_length_7894_cov_4.416378 4733..5097 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9965.t1.exon1Gcaud9965.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1884_length_7894_cov_4.416378 4301..4694 +
Gcaud9965.t1.exon2Gcaud9965.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_1884_length_7894_cov_4.416378 4733..5097 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9965.t1.intron1Gcaud9965.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_1884_length_7894_cov_4.416378 4695..4732 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9965.t1.stop1Gcaud9965.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1884_length_7894_cov_4.416378 5095..5097 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud9965.t1 ID=Gcaud9965.t1|Name=Gcaud9965.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=253bp
MEPKTVKRANDSDSFVCSYPRIGGLYRDCHTEIFRNEERDVTEPPPDDDG
RTFIARLGKDGTWETRGDRRNVPLLNGADARQMERVSFSELIAEFDELRK
KGRVDEFRVLGSDLKSSGKTKLTVFWKRIQKNYLAPEQDRFAIATDENSF
LIRRPSTVSINDILLAISTVLSGVMESFKLFSGVKKDLENRKAVKEREIR
GVNSDGFTNNDEGEKRDGEGALFLVKPFAKVIGLMALTVAELVPLWFLFI
NY*
back to top

spliced messenger RNA

>Gcaud9965.t1 ID=Gcaud9965.t1|Name=Gcaud9965.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=759bp|location=Sequence derived from alignment at NODE_1884_length_7894_cov_4.416378:4301..5097+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCCAAAAACAGTTAAGCGCGCCAATGATAGCGATTCTTTCGTCTG
CTCGTATCCCAGAATTGGTGGGTTATATAGAGACTGTCACACTGAGATTT
TCCGCAATGAAGAGAGAGACGTCACGGAACCGCCTCCAGATGACGATGGA
AGAACTTTCATAGCTAGGTTAGGAAAAGACGGTACATGGGAGACTCGAGG
AGACAGAAGAAACGTTCCTCTGTTGAATGGAGCAGACGCTAGACAAATGG
AGAGGGTTAGTTTCAGTGAACTTATTGCAGAGTTTGATGAATTGCGAAAG
AAAGGAAGAGTTGACGAGTTTCGTGTACTTGGAAGTGATCTAAAGTCCTC
AGGCAAGACTAAACTCACAGTGTTCTGGAAGAGAATTCAGAAGAATTATT
TAGCACCAGAACAGGATCGATTTGCCATAGCAACTGATGAAAACAGCTTC
CTCATACGGCGACCATCGACTGTATCTATCAACGATATTTTGCTTGCAAT
ATCAACTGTTTTGAGTGGAGTCATGGAGTCATTCAAACTCTTTTCAGGTG
TGAAGAAAGACTTGGAGAACAGGAAAGCAGTGAAGGAAAGAGAAATTAGA
GGTGTAAACTCGGATGGTTTTACAAACAACGATGAAGGAGAAAAACGGGA
CGGAGAAGGAGCTTTGTTTCTGGTTAAACCGTTCGCTAAAGTTATTGGTC
TAATGGCTCTTACTGTCGCAGAATTGGTGCCTTTGTGGTTTTTGTTTATC
AACTATTAG
back to top

protein sequence of Gcaud9965.t1

>Gcaud9965.t1 ID=Gcaud9965.t1|Name=Gcaud9965.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=253bp
MEPKTVKRANDSDSFVCSYPRIGGLYRDCHTEIFRNEERDVTEPPPDDDG
RTFIARLGKDGTWETRGDRRNVPLLNGADARQMERVSFSELIAEFDELRK
KGRVDEFRVLGSDLKSSGKTKLTVFWKRIQKNYLAPEQDRFAIATDENSF
LIRRPSTVSINDILLAISTVLSGVMESFKLFSGVKKDLENRKAVKEREIR
GVNSDGFTNNDEGEKRDGEGALFLVKPFAKVIGLMALTVAELVPLWFLFI
NY*
back to top

mRNA from alignment at NODE_1884_length_7894_cov_4.416378:4301..5097+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud9965.t1 ID=Gcaud9965.t1|Name=Gcaud9965.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=797bp|location=Sequence derived from alignment at NODE_1884_length_7894_cov_4.416378:4301..5097+ (Gracilaria caudata M_176_S67 male)
ATGGAGCCAAAAACAGTTAAGCGCGCCAATGATAGCGATTCTTTCGTCTG
CTCGTATCCCAGAATTGGTGGGTTATATAGAGACTGTCACACTGAGATTT
TCCGCAATGAAGAGAGAGACGTCACGGAACCGCCTCCAGATGACGATGGA
AGAACTTTCATAGCTAGGTTAGGAAAAGACGGTACATGGGAGACTCGAGG
AGACAGAAGAAACGTTCCTCTGTTGAATGGAGCAGACGCTAGACAAATGG
AGAGGGTTAGTTTCAGTGAACTTATTGCAGAGTTTGATGAATTGCGAAAG
AAAGGAAGAGTTGACGAGTTTCGTGTACTTGGAAGTGATCTAAAGTCCTC
AGGCAAGACTAAACTCACAGTGTTCTGGAAGAGAATTCAGAAGAGTGCGG
AAGGATGTTTGCGAGCGCTTTGGAAAGCGTAGATTATTTAGCACCAGAAC
AGGATCGATTTGCCATAGCAACTGATGAAAACAGCTTCCTCATACGGCGA
CCATCGACTGTATCTATCAACGATATTTTGCTTGCAATATCAACTGTTTT
GAGTGGAGTCATGGAGTCATTCAAACTCTTTTCAGGTGTGAAGAAAGACT
TGGAGAACAGGAAAGCAGTGAAGGAAAGAGAAATTAGAGGTGTAAACTCG
GATGGTTTTACAAACAACGATGAAGGAGAAAAACGGGACGGAGAAGGAGC
TTTGTTTCTGGTTAAACCGTTCGCTAAAGTTATTGGTCTAATGGCTCTTA
CTGTCGCAGAATTGGTGCCTTTGTGGTTTTTGTTTATCAACTATTAG
back to top

Coding sequence (CDS) from alignment at NODE_1884_length_7894_cov_4.416378:4301..5097+

>Gcaud9965.t1 ID=Gcaud9965.t1|Name=Gcaud9965.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=759bp|location=Sequence derived from alignment at NODE_1884_length_7894_cov_4.416378:4301..5097+ (Gracilaria caudata M_176_S67 male)
ATGGAGCCAAAAACAGTTAAGCGCGCCAATGATAGCGATTCTTTCGTCTG
CTCGTATCCCAGAATTGGTGGGTTATATAGAGACTGTCACACTGAGATTT
TCCGCAATGAAGAGAGAGACGTCACGGAACCGCCTCCAGATGACGATGGA
AGAACTTTCATAGCTAGGTTAGGAAAAGACGGTACATGGGAGACTCGAGG
AGACAGAAGAAACGTTCCTCTGTTGAATGGAGCAGACGCTAGACAAATGG
AGAGGGTTAGTTTCAGTGAACTTATTGCAGAGTTTGATGAATTGCGAAAG
AAAGGAAGAGTTGACGAGTTTCGTGTACTTGGAAGTGATCTAAAGTCCTC
AGGCAAGACTAAACTCACAGTGTTCTGGAAGAGAATTCAGAAGAATTATT
TAGCACCAGAACAGGATCGATTTGCCATAGCAACTGATGAAAACAGCTTC
CTCATACGGCGACCATCGACTGTATCTATCAACGATATTTTGCTTGCAAT
ATCAACTGTTTTGAGTGGAGTCATGGAGTCATTCAAACTCTTTTCAGGTG
TGAAGAAAGACTTGGAGAACAGGAAAGCAGTGAAGGAAAGAGAAATTAGA
GGTGTAAACTCGGATGGTTTTACAAACAACGATGAAGGAGAAAAACGGGA
CGGAGAAGGAGCTTTGTTTCTGGTTAAACCGTTCGCTAAAGTTATTGGTC
TAATGGCTCTTACTGTCGCAGAATTGGTGCCTTTGTGGTTTTTGTTTATC
AACTATTAG
back to top