Gcaud9951.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud9951.t1
Unique Name	Gcaud9951.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	277

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_3277_length_3722_cov_4.996420	contig	NODE_3277_length_3722_cov_4.996420:657..1487 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9951	Gcaud9951	Gracilaria caudata M_176_S67 male	gene	NODE_3277_length_3722_cov_4.996420 657..1487 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9951.t1.start1	Gcaud9951.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_3277_length_3722_cov_4.996420 657..659 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9951.t1.CDS1	Gcaud9951.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_3277_length_3722_cov_4.996420 657..1487 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9951.t1.exon1	Gcaud9951.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_3277_length_3722_cov_4.996420 657..1487 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9951.t1.stop1	Gcaud9951.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_3277_length_3722_cov_4.996420 1485..1487 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9951.t1	Gcaud9951.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_3277_length_3722_cov_4.996420 657..1487 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_3277_length_3722_cov_4.996420:657..1487+
coding sequence from alignment at NODE_3277_length_3722_cov_4.996420:657..1487+

mRNA sequence

>Gcaud9951.t1 ID=Gcaud9951.t1|Name=Gcaud9951.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=277bp
MAHLGILAFFFIQFCRDVVRSSPISSRKFEHGELLAFSSYSSSSGQLYDG
FAKAKEERSARLEIPAVRVGGGRTQTVGDASEVETESFLYQHQEEFEDIM
EASPQPDPEIDLQDILDILFSLPCSGGQCSSDNQTQLRCDISDLRDDENL
PLSNGGEGGGNATDPSDEGILTILDTPPVLVRLTTAENDENAVLCGHREL
SSSNSAVLVTPEETATPDLAGLDGTDMSLPISTNGTEGSVEASRGNGTLG
VGLAKFTGLLSVLEDRLEHVAVHVLS*

spliced messenger RNA

>Gcaud9951.t1 ID=Gcaud9951.t1|Name=Gcaud9951.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=831bp|location=Sequence derived from alignment at NODE_3277_length_3722_cov_4.996420:657..1487+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCATCTCGGAATACTCGCATTTTTCTTCATTCAATTCTGTCGGGA
TGTTGTACGTTCTTCTCCAATATCGTCTAGAAAGTTTGAGCATGGTGAAC
TACTTGCGTTTTCTTCTTATTCAAGCTCTTCAGGGCAATTGTATGACGGT
TTTGCTAAGGCGAAGGAAGAACGATCAGCACGACTTGAAATTCCTGCCGT
TCGAGTAGGAGGAGGCCGAACGCAAACTGTGGGTGATGCTTCTGAAGTTG
AAACTGAATCATTTCTTTATCAGCACCAAGAAGAGTTTGAAGATATCATG
GAAGCTTCTCCGCAACCAGATCCAGAAATAGATTTGCAAGATATCCTAGA
TATCCTTTTCAGTTTACCTTGCAGTGGAGGCCAGTGCTCCTCGGACAATC
AGACACAGCTCCGTTGTGATATTTCTGATCTGAGGGATGATGAAAATTTG
CCGCTGAGTAACGGAGGAGAGGGGGGTGGAAATGCCACCGACCCGTCCGA
TGAAGGGATTCTGACCATACTCGATACTCCGCCTGTCCTCGTTCGGCTCA
CGACAGCCGAAAATGATGAAAACGCTGTTTTATGTGGTCACAGGGAACTT
TCTTCGAGTAATTCTGCGGTTTTAGTAACGCCTGAGGAAACAGCAACACC
CGATTTAGCCGGCCTCGATGGGACTGACATGAGTTTACCAATTAGTACCA
ATGGAACAGAGGGAAGTGTAGAGGCCTCCAGAGGGAATGGAACTCTTGGC
GTCGGTTTAGCAAAGTTCACGGGCCTTCTTTCGGTTTTGGAGGATCGTTT
GGAACATGTTGCCGTCCATGTTCTTTCCTGA

protein sequence of Gcaud9951.t1

>Gcaud9951.t1 ID=Gcaud9951.t1|Name=Gcaud9951.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=277bp
MAHLGILAFFFIQFCRDVVRSSPISSRKFEHGELLAFSSYSSSSGQLYDG
FAKAKEERSARLEIPAVRVGGGRTQTVGDASEVETESFLYQHQEEFEDIM
EASPQPDPEIDLQDILDILFSLPCSGGQCSSDNQTQLRCDISDLRDDENL
PLSNGGEGGGNATDPSDEGILTILDTPPVLVRLTTAENDENAVLCGHREL
SSSNSAVLVTPEETATPDLAGLDGTDMSLPISTNGTEGSVEASRGNGTLG
VGLAKFTGLLSVLEDRLEHVAVHVLS*

mRNA from alignment at NODE_3277_length_3722_cov_4.996420:657..1487+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud9951.t1 ID=Gcaud9951.t1|Name=Gcaud9951.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=831bp|location=Sequence derived from alignment at NODE_3277_length_3722_cov_4.996420:657..1487+ (Gracilaria caudata M_176_S67 male)
ATGGCTCATCTCGGAATACTCGCATTTTTCTTCATTCAATTCTGTCGGGA
TGTTGTACGTTCTTCTCCAATATCGTCTAGAAAGTTTGAGCATGGTGAAC
TACTTGCGTTTTCTTCTTATTCAAGCTCTTCAGGGCAATTGTATGACGGT
TTTGCTAAGGCGAAGGAAGAACGATCAGCACGACTTGAAATTCCTGCCGT
TCGAGTAGGAGGAGGCCGAACGCAAACTGTGGGTGATGCTTCTGAAGTTG
AAACTGAATCATTTCTTTATCAGCACCAAGAAGAGTTTGAAGATATCATG
GAAGCTTCTCCGCAACCAGATCCAGAAATAGATTTGCAAGATATCCTAGA
TATCCTTTTCAGTTTACCTTGCAGTGGAGGCCAGTGCTCCTCGGACAATC
AGACACAGCTCCGTTGTGATATTTCTGATCTGAGGGATGATGAAAATTTG
CCGCTGAGTAACGGAGGAGAGGGGGGTGGAAATGCCACCGACCCGTCCGA
TGAAGGGATTCTGACCATACTCGATACTCCGCCTGTCCTCGTTCGGCTCA
CGACAGCCGAAAATGATGAAAACGCTGTTTTATGTGGTCACAGGGAACTT
TCTTCGAGTAATTCTGCGGTTTTAGTAACGCCTGAGGAAACAGCAACACC
CGATTTAGCCGGCCTCGATGGGACTGACATGAGTTTACCAATTAGTACCA
ATGGAACAGAGGGAAGTGTAGAGGCCTCCAGAGGGAATGGAACTCTTGGC
GTCGGTTTAGCAAAGTTCACGGGCCTTCTTTCGGTTTTGGAGGATCGTTT
GGAACATGTTGCCGTCCATGTTCTTTCCTGA

Coding sequence (CDS) from alignment at NODE_3277_length_3722_cov_4.996420:657..1487+

>Gcaud9951.t1 ID=Gcaud9951.t1|Name=Gcaud9951.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=831bp|location=Sequence derived from alignment at NODE_3277_length_3722_cov_4.996420:657..1487+ (Gracilaria caudata M_176_S67 male)
ATGGCTCATCTCGGAATACTCGCATTTTTCTTCATTCAATTCTGTCGGGA
TGTTGTACGTTCTTCTCCAATATCGTCTAGAAAGTTTGAGCATGGTGAAC
TACTTGCGTTTTCTTCTTATTCAAGCTCTTCAGGGCAATTGTATGACGGT
TTTGCTAAGGCGAAGGAAGAACGATCAGCACGACTTGAAATTCCTGCCGT
TCGAGTAGGAGGAGGCCGAACGCAAACTGTGGGTGATGCTTCTGAAGTTG
AAACTGAATCATTTCTTTATCAGCACCAAGAAGAGTTTGAAGATATCATG
GAAGCTTCTCCGCAACCAGATCCAGAAATAGATTTGCAAGATATCCTAGA
TATCCTTTTCAGTTTACCTTGCAGTGGAGGCCAGTGCTCCTCGGACAATC
AGACACAGCTCCGTTGTGATATTTCTGATCTGAGGGATGATGAAAATTTG
CCGCTGAGTAACGGAGGAGAGGGGGGTGGAAATGCCACCGACCCGTCCGA
TGAAGGGATTCTGACCATACTCGATACTCCGCCTGTCCTCGTTCGGCTCA
CGACAGCCGAAAATGATGAAAACGCTGTTTTATGTGGTCACAGGGAACTT
TCTTCGAGTAATTCTGCGGTTTTAGTAACGCCTGAGGAAACAGCAACACC
CGATTTAGCCGGCCTCGATGGGACTGACATGAGTTTACCAATTAGTACCA
ATGGAACAGAGGGAAGTGTAGAGGCCTCCAGAGGGAATGGAACTCTTGGC
GTCGGTTTAGCAAAGTTCACGGGCCTTCTTTCGGTTTTGGAGGATCGTTT
GGAACATGTTGCCGTCCATGTTCTTTCCTGA