Gcaud9917.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud9917.t1
Unique Name	Gcaud9917.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	664

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_302_length_31315_cov_4.933353	contig	NODE_302_length_31315_cov_4.933353:6243..8234 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9917	Gcaud9917	Gracilaria caudata M_176_S67 male	gene	NODE_302_length_31315_cov_4.933353 6243..8234 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9917.t1.stop1	Gcaud9917.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_302_length_31315_cov_4.933353 6243..6245 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9917.t1.CDS1	Gcaud9917.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_302_length_31315_cov_4.933353 6243..8234 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9917.t1.exon1	Gcaud9917.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_302_length_31315_cov_4.933353 6243..8234 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9917.t1.start1	Gcaud9917.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_302_length_31315_cov_4.933353 8232..8234 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9917.t1	Gcaud9917.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_302_length_31315_cov_4.933353 6243..8234 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_302_length_31315_cov_4.933353:6243..8234-
coding sequence from alignment at NODE_302_length_31315_cov_4.933353:6243..8234-

mRNA sequence

>Gcaud9917.t1 ID=Gcaud9917.t1|Name=Gcaud9917.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=664bp
MNVVNERSELPERSAVNDGHGFQDGRQNHGATATSSTSREVEANEQRQSG
RRRTRIGRALLKPFKLVGSGLKKAVRCCFQCSTSERGGVVPVVEIVEDRN
QGVPRNAHDEPRLALVEDVIEKNEGPENGEHHGMDAGTLECRLSADTGLD
VQPSSGSCSGDEEKGDRETLKEQDGGGSVGGGLTSPVVVKKAFATVISAA
EDDGQPVLRSTSPSDVAASLGGQSGENGDATANVPEAEVKKSNEDSSDYE
LNKSDDFRGVLIEEEVVMTSENDDLNTEEDSEAQSHADYGRTFQDDSYLQ
FFVNEQNESSGGSENGSVGSPSASASGEDEMSDHNTQNGSEKSVTETDEE
SPSVPSSESDSLDSDQIRESVENRDGGEATHSSDGDEESQADDIRLMNRE
NIVSRASSNSTSRDGSPLEPTIETGRNQGESNGNESQQGNSVFGFVLSKL
RSVLTSFRRENSEAEEQNFNDAQAEHDSDNEIETSSNSSENEGEVAAGNN
SGSCSQFSSSAVDSFSKSDANSGSAFESAGSGEGVEGGDSKNRVQEAAVS
HKSSQDDQDDQDDAESVPISGSSGTQSLEDSDHSSQVMSSSIAESFEDSD
QSSQAVPSSSARSIESSSHSSGSASLSSAESPADSDYSSQVVTSSSADMQ
TDSDEIEFGEESE*

spliced messenger RNA

>Gcaud9917.t1 ID=Gcaud9917.t1|Name=Gcaud9917.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1992bp|location=Sequence derived from alignment at NODE_302_length_31315_cov_4.933353:6243..8234- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATGTTGTGAACGAACGAAGTGAGCTTCCTGAGCGCTCGGCTGTAAA
CGATGGTCATGGCTTTCAGGATGGAAGACAAAACCACGGGGCCACCGCAA
CCTCCTCAACAAGCAGAGAGGTGGAAGCCAACGAACAAAGGCAGAGTGGA
CGGCGCCGCACCAGGATTGGTAGGGCACTGTTAAAACCGTTCAAACTCGT
TGGCTCAGGATTGAAGAAAGCTGTGCGGTGTTGCTTTCAATGCAGCACCA
GCGAGAGGGGAGGCGTCGTGCCTGTGGTGGAGATCGTCGAGGATCGAAAC
CAAGGGGTTCCAAGGAATGCCCATGATGAGCCTCGTTTAGCTCTTGTTGA
AGACGTTATTGAGAAAAACGAGGGCCCCGAAAATGGTGAACATCATGGAA
TGGATGCGGGGACTCTGGAATGCAGACTTTCTGCAGATACTGGACTTGAT
GTACAGCCCAGTTCGGGAAGCTGTTCGGGTGACGAAGAAAAGGGTGATCG
TGAAACCCTTAAGGAACAGGACGGAGGTGGAAGTGTAGGCGGAGGTCTTA
CTTCGCCTGTGGTGGTCAAGAAAGCCTTCGCGACAGTCATTTCCGCCGCG
GAGGATGACGGTCAGCCGGTGTTGAGGTCGACTTCTCCATCGGACGTTGC
CGCTTCGTTAGGTGGCCAAAGCGGTGAAAACGGAGACGCAACTGCAAACG
TCCCGGAAGCCGAAGTCAAAAAGAGCAACGAAGACTCTTCTGACTATGAA
CTTAATAAGTCCGATGACTTCAGAGGAGTTCTCATCGAAGAGGAGGTAGT
AATGACCTCGGAAAATGATGACCTGAACACGGAAGAGGACAGTGAAGCCC
AGTCCCATGCCGATTATGGAAGAACTTTCCAGGACGACAGTTACCTGCAA
TTCTTCGTGAACGAGCAGAACGAATCTTCTGGCGGTTCGGAAAATGGATC
TGTGGGCAGCCCAAGCGCTTCGGCGTCGGGAGAAGATGAGATGTCTGATC
ACAACACACAAAACGGATCAGAAAAGTCCGTAACGGAAACAGACGAAGAA
TCTCCTTCTGTACCGTCGTCAGAAAGCGACTCTCTTGATTCTGACCAAAT
CAGAGAATCCGTCGAGAATCGAGACGGAGGGGAGGCGACGCACAGCAGTG
ATGGTGATGAAGAAAGCCAGGCCGATGACATACGCCTCATGAATCGAGAG
AATATCGTGTCGCGTGCTTCAAGTAATTCCACGTCCCGGGATGGGAGCCC
ATTGGAGCCAACGATCGAAACAGGAAGAAATCAAGGTGAGTCCAACGGAA
ACGAGAGTCAACAAGGAAATTCTGTGTTCGGTTTTGTGCTTTCAAAGTTA
CGTTCCGTTCTCACAAGCTTTCGACGTGAAAACAGCGAAGCTGAAGAGCA
AAACTTTAATGATGCACAAGCTGAACATGACTCAGACAACGAGATCGAAA
CCTCTTCAAACAGTTCTGAGAATGAAGGCGAGGTTGCGGCTGGGAATAAC
TCTGGATCATGTTCACAATTCTCTTCTTCTGCAGTTGACAGCTTTTCCAA
GAGCGACGCCAACTCAGGGAGTGCTTTTGAATCCGCGGGGAGTGGAGAGG
GTGTTGAAGGAGGGGACTCCAAAAATCGCGTACAAGAAGCAGCCGTCTCA
CATAAGTCCTCCCAAGACGATCAAGATGATCAAGATGATGCGGAATCCGT
GCCAATAAGCGGTTCTTCAGGCACCCAATCCCTCGAAGATTCTGATCATT
CCTCCCAGGTAATGTCGTCGTCTATTGCAGAATCGTTCGAAGACTCGGAC
CAATCATCTCAGGCAGTGCCTTCTTCCAGTGCTAGATCTATTGAGAGCTC
GAGCCATTCTTCTGGATCGGCGTCGCTTTCCAGTGCTGAATCGCCTGCTG
ATTCCGATTACTCGTCACAAGTTGTGACGTCTTCTTCTGCAGATATGCAA
ACAGACTCAGATGAAATAGAATTTGGAGAAGAATCAGAATGA

protein sequence of Gcaud9917.t1

>Gcaud9917.t1 ID=Gcaud9917.t1|Name=Gcaud9917.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=664bp
MNVVNERSELPERSAVNDGHGFQDGRQNHGATATSSTSREVEANEQRQSG
RRRTRIGRALLKPFKLVGSGLKKAVRCCFQCSTSERGGVVPVVEIVEDRN
QGVPRNAHDEPRLALVEDVIEKNEGPENGEHHGMDAGTLECRLSADTGLD
VQPSSGSCSGDEEKGDRETLKEQDGGGSVGGGLTSPVVVKKAFATVISAA
EDDGQPVLRSTSPSDVAASLGGQSGENGDATANVPEAEVKKSNEDSSDYE
LNKSDDFRGVLIEEEVVMTSENDDLNTEEDSEAQSHADYGRTFQDDSYLQ
FFVNEQNESSGGSENGSVGSPSASASGEDEMSDHNTQNGSEKSVTETDEE
SPSVPSSESDSLDSDQIRESVENRDGGEATHSSDGDEESQADDIRLMNRE
NIVSRASSNSTSRDGSPLEPTIETGRNQGESNGNESQQGNSVFGFVLSKL
RSVLTSFRRENSEAEEQNFNDAQAEHDSDNEIETSSNSSENEGEVAAGNN
SGSCSQFSSSAVDSFSKSDANSGSAFESAGSGEGVEGGDSKNRVQEAAVS
HKSSQDDQDDQDDAESVPISGSSGTQSLEDSDHSSQVMSSSIAESFEDSD
QSSQAVPSSSARSIESSSHSSGSASLSSAESPADSDYSSQVVTSSSADMQ
TDSDEIEFGEESE*

mRNA from alignment at NODE_302_length_31315_cov_4.933353:6243..8234-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud9917.t1 ID=Gcaud9917.t1|Name=Gcaud9917.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1992bp|location=Sequence derived from alignment at NODE_302_length_31315_cov_4.933353:6243..8234- (Gracilaria caudata M_176_S67 male)
ATGAATGTTGTGAACGAACGAAGTGAGCTTCCTGAGCGCTCGGCTGTAAA
CGATGGTCATGGCTTTCAGGATGGAAGACAAAACCACGGGGCCACCGCAA
CCTCCTCAACAAGCAGAGAGGTGGAAGCCAACGAACAAAGGCAGAGTGGA
CGGCGCCGCACCAGGATTGGTAGGGCACTGTTAAAACCGTTCAAACTCGT
TGGCTCAGGATTGAAGAAAGCTGTGCGGTGTTGCTTTCAATGCAGCACCA
GCGAGAGGGGAGGCGTCGTGCCTGTGGTGGAGATCGTCGAGGATCGAAAC
CAAGGGGTTCCAAGGAATGCCCATGATGAGCCTCGTTTAGCTCTTGTTGA
AGACGTTATTGAGAAAAACGAGGGCCCCGAAAATGGTGAACATCATGGAA
TGGATGCGGGGACTCTGGAATGCAGACTTTCTGCAGATACTGGACTTGAT
GTACAGCCCAGTTCGGGAAGCTGTTCGGGTGACGAAGAAAAGGGTGATCG
TGAAACCCTTAAGGAACAGGACGGAGGTGGAAGTGTAGGCGGAGGTCTTA
CTTCGCCTGTGGTGGTCAAGAAAGCCTTCGCGACAGTCATTTCCGCCGCG
GAGGATGACGGTCAGCCGGTGTTGAGGTCGACTTCTCCATCGGACGTTGC
CGCTTCGTTAGGTGGCCAAAGCGGTGAAAACGGAGACGCAACTGCAAACG
TCCCGGAAGCCGAAGTCAAAAAGAGCAACGAAGACTCTTCTGACTATGAA
CTTAATAAGTCCGATGACTTCAGAGGAGTTCTCATCGAAGAGGAGGTAGT
AATGACCTCGGAAAATGATGACCTGAACACGGAAGAGGACAGTGAAGCCC
AGTCCCATGCCGATTATGGAAGAACTTTCCAGGACGACAGTTACCTGCAA
TTCTTCGTGAACGAGCAGAACGAATCTTCTGGCGGTTCGGAAAATGGATC
TGTGGGCAGCCCAAGCGCTTCGGCGTCGGGAGAAGATGAGATGTCTGATC
ACAACACACAAAACGGATCAGAAAAGTCCGTAACGGAAACAGACGAAGAA
TCTCCTTCTGTACCGTCGTCAGAAAGCGACTCTCTTGATTCTGACCAAAT
CAGAGAATCCGTCGAGAATCGAGACGGAGGGGAGGCGACGCACAGCAGTG
ATGGTGATGAAGAAAGCCAGGCCGATGACATACGCCTCATGAATCGAGAG
AATATCGTGTCGCGTGCTTCAAGTAATTCCACGTCCCGGGATGGGAGCCC
ATTGGAGCCAACGATCGAAACAGGAAGAAATCAAGGTGAGTCCAACGGAA
ACGAGAGTCAACAAGGAAATTCTGTGTTCGGTTTTGTGCTTTCAAAGTTA
CGTTCCGTTCTCACAAGCTTTCGACGTGAAAACAGCGAAGCTGAAGAGCA
AAACTTTAATGATGCACAAGCTGAACATGACTCAGACAACGAGATCGAAA
CCTCTTCAAACAGTTCTGAGAATGAAGGCGAGGTTGCGGCTGGGAATAAC
TCTGGATCATGTTCACAATTCTCTTCTTCTGCAGTTGACAGCTTTTCCAA
GAGCGACGCCAACTCAGGGAGTGCTTTTGAATCCGCGGGGAGTGGAGAGG
GTGTTGAAGGAGGGGACTCCAAAAATCGCGTACAAGAAGCAGCCGTCTCA
CATAAGTCCTCCCAAGACGATCAAGATGATCAAGATGATGCGGAATCCGT
GCCAATAAGCGGTTCTTCAGGCACCCAATCCCTCGAAGATTCTGATCATT
CCTCCCAGGTAATGTCGTCGTCTATTGCAGAATCGTTCGAAGACTCGGAC
CAATCATCTCAGGCAGTGCCTTCTTCCAGTGCTAGATCTATTGAGAGCTC
GAGCCATTCTTCTGGATCGGCGTCGCTTTCCAGTGCTGAATCGCCTGCTG
ATTCCGATTACTCGTCACAAGTTGTGACGTCTTCTTCTGCAGATATGCAA
ACAGACTCAGATGAAATAGAATTTGGAGAAGAATCAGAATGA

Coding sequence (CDS) from alignment at NODE_302_length_31315_cov_4.933353:6243..8234-

>Gcaud9917.t1 ID=Gcaud9917.t1|Name=Gcaud9917.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1992bp|location=Sequence derived from alignment at NODE_302_length_31315_cov_4.933353:6243..8234- (Gracilaria caudata M_176_S67 male)
ATGAATGTTGTGAACGAACGAAGTGAGCTTCCTGAGCGCTCGGCTGTAAA
CGATGGTCATGGCTTTCAGGATGGAAGACAAAACCACGGGGCCACCGCAA
CCTCCTCAACAAGCAGAGAGGTGGAAGCCAACGAACAAAGGCAGAGTGGA
CGGCGCCGCACCAGGATTGGTAGGGCACTGTTAAAACCGTTCAAACTCGT
TGGCTCAGGATTGAAGAAAGCTGTGCGGTGTTGCTTTCAATGCAGCACCA
GCGAGAGGGGAGGCGTCGTGCCTGTGGTGGAGATCGTCGAGGATCGAAAC
CAAGGGGTTCCAAGGAATGCCCATGATGAGCCTCGTTTAGCTCTTGTTGA
AGACGTTATTGAGAAAAACGAGGGCCCCGAAAATGGTGAACATCATGGAA
TGGATGCGGGGACTCTGGAATGCAGACTTTCTGCAGATACTGGACTTGAT
GTACAGCCCAGTTCGGGAAGCTGTTCGGGTGACGAAGAAAAGGGTGATCG
TGAAACCCTTAAGGAACAGGACGGAGGTGGAAGTGTAGGCGGAGGTCTTA
CTTCGCCTGTGGTGGTCAAGAAAGCCTTCGCGACAGTCATTTCCGCCGCG
GAGGATGACGGTCAGCCGGTGTTGAGGTCGACTTCTCCATCGGACGTTGC
CGCTTCGTTAGGTGGCCAAAGCGGTGAAAACGGAGACGCAACTGCAAACG
TCCCGGAAGCCGAAGTCAAAAAGAGCAACGAAGACTCTTCTGACTATGAA
CTTAATAAGTCCGATGACTTCAGAGGAGTTCTCATCGAAGAGGAGGTAGT
AATGACCTCGGAAAATGATGACCTGAACACGGAAGAGGACAGTGAAGCCC
AGTCCCATGCCGATTATGGAAGAACTTTCCAGGACGACAGTTACCTGCAA
TTCTTCGTGAACGAGCAGAACGAATCTTCTGGCGGTTCGGAAAATGGATC
TGTGGGCAGCCCAAGCGCTTCGGCGTCGGGAGAAGATGAGATGTCTGATC
ACAACACACAAAACGGATCAGAAAAGTCCGTAACGGAAACAGACGAAGAA
TCTCCTTCTGTACCGTCGTCAGAAAGCGACTCTCTTGATTCTGACCAAAT
CAGAGAATCCGTCGAGAATCGAGACGGAGGGGAGGCGACGCACAGCAGTG
ATGGTGATGAAGAAAGCCAGGCCGATGACATACGCCTCATGAATCGAGAG
AATATCGTGTCGCGTGCTTCAAGTAATTCCACGTCCCGGGATGGGAGCCC
ATTGGAGCCAACGATCGAAACAGGAAGAAATCAAGGTGAGTCCAACGGAA
ACGAGAGTCAACAAGGAAATTCTGTGTTCGGTTTTGTGCTTTCAAAGTTA
CGTTCCGTTCTCACAAGCTTTCGACGTGAAAACAGCGAAGCTGAAGAGCA
AAACTTTAATGATGCACAAGCTGAACATGACTCAGACAACGAGATCGAAA
CCTCTTCAAACAGTTCTGAGAATGAAGGCGAGGTTGCGGCTGGGAATAAC
TCTGGATCATGTTCACAATTCTCTTCTTCTGCAGTTGACAGCTTTTCCAA
GAGCGACGCCAACTCAGGGAGTGCTTTTGAATCCGCGGGGAGTGGAGAGG
GTGTTGAAGGAGGGGACTCCAAAAATCGCGTACAAGAAGCAGCCGTCTCA
CATAAGTCCTCCCAAGACGATCAAGATGATCAAGATGATGCGGAATCCGT
GCCAATAAGCGGTTCTTCAGGCACCCAATCCCTCGAAGATTCTGATCATT
CCTCCCAGGTAATGTCGTCGTCTATTGCAGAATCGTTCGAAGACTCGGAC
CAATCATCTCAGGCAGTGCCTTCTTCCAGTGCTAGATCTATTGAGAGCTC
GAGCCATTCTTCTGGATCGGCGTCGCTTTCCAGTGCTGAATCGCCTGCTG
ATTCCGATTACTCGTCACAAGTTGTGACGTCTTCTTCTGCAGATATGCAA
ACAGACTCAGATGAAATAGAATTTGGAGAAGAATCAGAATGA