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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 1541065.JRFE01000017_gene144 |
| Preferred name | mutS2 |
| PFAMs | MutS_V,Smr |
| Max annot lvl | 1117|Cyanobacteria |
| KEGG ko | ko:K07456 |
| KEGG Pathway | ko03430,map03430 |
| GOs | GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008094,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0030983,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391 |
| Evalue | 1.6e-174 |
| EggNOG OGs | COG1193@1|root,COG1193@2|Bacteria,1G1GB@1117|Cyanobacteria,3VIAX@52604|Pleurocapsales |
| Description | Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity |
| COG category | L |
| BRITE | ko00000,ko00001,ko03400 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud9899.t1.stop1 | Gcaud9899.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_177_length_40581_cov_4.324031 24001..24003 - |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud9899.t1.intron1 | Gcaud9899.t1.intron1 | Gracilaria caudata M_176_S67 male | intron | NODE_177_length_40581_cov_4.324031 25150..25273 - |
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud9899.t1.start1 | Gcaud9899.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_177_length_40581_cov_4.324031 26537..26539 - |
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud9899.t1 ID=Gcaud9899.t1|Name=Gcaud9899.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=805bp MRVPQSREESESVLALTRAMHYLRFTLMKAVEFGGVRDVTDVLLRAEKGV LLTAAELRHIADTLSAARRIRRFIDAEQDERVLVLKRLVSDVRTYPQVDG RINELIDEFSQVVDTFDPPLRQIRADIRATSSDINQRLNRIMSAQAEAIQ ERLVTMRYDRFVIPVKTPRKALFKRAVVHDVSASGGTTYLEPAAVRHLND RLRMLAAKERARIDKVLRELTELVAPLREDITHLCDVICQLDVAAAKANA SNELGAVDVQFDDTKPLRLLGVRHPLLSWRAMTRTQSAEQQGASRGSSLH EEPLWKREVVPTNYQLSHDVRCVCVTGPNTGGKTLALKTLGVSVLMAKAG MFVPAVLDKSGHEDEVSAHLPYFDNVLADIGDDQSLVQSLSTFSGHVERI KRILAASTSESLVLLDEIGSGTDPAEGAALGMSILRHLAVGNRAALTFAT THHGELKTLKYSKDSSARFFENASVEFDDVNMVPTYRLVWGIPGRSNALA IAERLGMEPSVIEEARFLLNGADDENGSSTRVDIEKMIYSLEQDKNAAEA AREDSERALREASAMRSELESRLGRLRENEAQLRKDQKNAMNEEVKLAKQ QIAKVIREMQRGGGSAQAAGRASEKLGKLKVPGSEASSSQVVRTGPFNVD DITEGDKVTVPRLSVNEVEVVEKLSKKELMVAIGAMRAKVKVKEIVSVNH RKSDQSNIPSKRRRGGETSKKQLRVRTAANTIDIRGQRVDSAQPLVDQAI SKALAMGTLWVIHGHGTGRLRDGIREFLSQHELVERLSYAEQEEGGTGVT VAFL* back to topspliced messenger RNA >Gcaud9899.t1 ID=Gcaud9899.t1|Name=Gcaud9899.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2415bp|location=Sequence derived from alignment at NODE_177_length_40581_cov_4.324031:24001..26539- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGCGTGTTCCGCAGTCGAGGGAGGAGAGTGAGAGCGTGTTGGCGCTTAC TAGAGCAATGCATTATTTGCGCTTCACGCTGATGAAGGCGGTGGAGTTTG GGGGCGTGCGGGATGTGACGGATGTTTTGTTGAGGGCGGAGAAGGGCGTG TTGTTGACCGCCGCGGAATTGAGACACATTGCGGATACACTTTCGGCTGC ACGAAGGATTCGACGCTTTATAGACGCTGAACAGGATGAACGAGTGCTTG TTTTGAAGAGATTGGTTAGCGATGTGCGAACGTATCCGCAGGTGGATGGC AGGATTAATGAGCTCATTGACGAGTTTTCACAGGTCGTGGACACTTTTGA TCCGCCTCTGAGACAGATTCGAGCTGATATTCGCGCCACCAGTTCCGATA TTAATCAGCGATTGAACCGAATCATGAGCGCTCAGGCGGAGGCTATCCAG GAACGTCTTGTCACAATGCGCTACGATCGCTTTGTCATTCCTGTCAAGAC GCCGAGGAAGGCGTTGTTCAAACGCGCCGTCGTGCATGATGTGAGTGCGT CGGGTGGTACTACGTATCTGGAACCTGCTGCAGTGCGTCATCTTAATGAT CGACTTCGCATGCTTGCAGCGAAGGAACGGGCCAGAATTGACAAGGTTTT GAGGGAGCTTACGGAGTTGGTGGCGCCTTTGCGAGAAGACATTACTCACT TGTGTGACGTGATTTGTCAACTGGATGTTGCCGCCGCAAAGGCAAATGCT TCCAATGAACTGGGCGCCGTGGACGTGCAGTTTGACGATACCAAACCGCT GCGTTTGCTGGGCGTGCGTCATCCGCTACTGTCGTGGCGCGCCATGACGA GAACTCAATCTGCAGAGCAACAAGGCGCCTCGCGGGGATCTTCGCTACAC GAAGAGCCGCTGTGGAAGCGGGAGGTCGTACCGACAAATTACCAACTCTC GCACGACGTTCGATGCGTCTGTGTTACCGGTCCGAATACTGGAGGGAAGA CACTGGCTTTGAAGACGCTTGGCGTGTCGGTGCTCATGGCGAAGGCGGGC ATGTTTGTGCCGGCTGTTTTGGACAAGAGCGGACACGAGGACGAGGTGAG CGCGCATCTGCCGTACTTTGATAACGTGCTCGCCGACATTGGTGATGATC AATCGCTTGTACAGTCATTGTCCACTTTCTCGGGACACGTCGAGAGAATC AAACGTATTCTCGCCGCAAGCACGTCTGAGTCGCTGGTTTTGTTGGACGA GATTGGATCTGGAACGGATCCGGCTGAAGGGGCTGCGTTGGGAATGTCCA TTCTGAGGCACCTGGCCGTTGGCAATCGAGCGGCACTTACTTTTGCTACT ACACATCATGGAGAACTGAAGACTTTGAAGTATTCTAAGGACAGCTCTGC GCGATTCTTCGAGAATGCTAGCGTGGAGTTTGACGATGTGAACATGGTAC CGACGTACCGATTGGTGTGGGGGATACCGGGAAGGTCGAACGCGCTAGCG ATCGCGGAACGACTCGGAATGGAACCGTCTGTGATCGAGGAGGCGCGTTT CCTGCTGAACGGGGCTGATGACGAGAACGGGTCAAGCACGCGAGTGGACA TCGAAAAGATGATTTACAGTCTTGAGCAAGACAAGAACGCTGCAGAAGCT GCGCGCGAGGATTCGGAACGCGCGTTGCGAGAAGCGAGCGCAATGCGTTC TGAGCTGGAAAGCCGACTCGGTAGACTTCGCGAGAATGAAGCACAGTTGA GAAAGGATCAGAAAAACGCAATGAATGAGGAGGTGAAGCTGGCGAAGCAA CAAATAGCTAAGGTAATTCGCGAGATGCAAAGAGGCGGGGGTTCTGCACA GGCTGCGGGACGTGCTTCTGAGAAGCTTGGGAAGCTGAAAGTTCCGGGCT CTGAGGCTTCTTCATCGCAAGTGGTGCGAACAGGGCCATTCAATGTGGAT GACATTACGGAAGGTGATAAGGTGACTGTGCCAAGGCTCAGCGTGAATGA GGTAGAGGTGGTAGAAAAGCTGAGCAAGAAGGAACTAATGGTGGCGATTG GAGCTATGAGAGCAAAGGTGAAGGTCAAAGAAATTGTATCGGTGAATCAC AGAAAGAGCGATCAATCAAATATACCTTCAAAACGTAGAAGAGGGGGCGA AACGAGCAAGAAGCAGCTCAGAGTTCGTACGGCTGCCAACACAATTGATA TTAGAGGGCAGAGAGTAGATTCGGCGCAGCCTTTGGTGGACCAGGCAATC AGCAAGGCGCTCGCGATGGGAACGTTGTGGGTTATACACGGACACGGAAC TGGTCGTCTGAGGGATGGGATCAGAGAGTTTTTGTCACAGCATGAACTGG TGGAAAGACTATCGTACGCAGAGCAGGAGGAGGGCGGCACAGGGGTTACG GTAGCGTTTCTGTAA back to topprotein sequence of Gcaud9899.t1 >Gcaud9899.t1 ID=Gcaud9899.t1|Name=Gcaud9899.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=805bp
MRVPQSREESESVLALTRAMHYLRFTLMKAVEFGGVRDVTDVLLRAEKGV LLTAAELRHIADTLSAARRIRRFIDAEQDERVLVLKRLVSDVRTYPQVDG RINELIDEFSQVVDTFDPPLRQIRADIRATSSDINQRLNRIMSAQAEAIQ ERLVTMRYDRFVIPVKTPRKALFKRAVVHDVSASGGTTYLEPAAVRHLND RLRMLAAKERARIDKVLRELTELVAPLREDITHLCDVICQLDVAAAKANA SNELGAVDVQFDDTKPLRLLGVRHPLLSWRAMTRTQSAEQQGASRGSSLH EEPLWKREVVPTNYQLSHDVRCVCVTGPNTGGKTLALKTLGVSVLMAKAG MFVPAVLDKSGHEDEVSAHLPYFDNVLADIGDDQSLVQSLSTFSGHVERI KRILAASTSESLVLLDEIGSGTDPAEGAALGMSILRHLAVGNRAALTFAT THHGELKTLKYSKDSSARFFENASVEFDDVNMVPTYRLVWGIPGRSNALA IAERLGMEPSVIEEARFLLNGADDENGSSTRVDIEKMIYSLEQDKNAAEA AREDSERALREASAMRSELESRLGRLRENEAQLRKDQKNAMNEEVKLAKQ QIAKVIREMQRGGGSAQAAGRASEKLGKLKVPGSEASSSQVVRTGPFNVD DITEGDKVTVPRLSVNEVEVVEKLSKKELMVAIGAMRAKVKVKEIVSVNH RKSDQSNIPSKRRRGGETSKKQLRVRTAANTIDIRGQRVDSAQPLVDQAI SKALAMGTLWVIHGHGTGRLRDGIREFLSQHELVERLSYAEQEEGGTGVT VAFL* back to topmRNA from alignment at NODE_177_length_40581_cov_4.324031:24001..26539- Legend: polypeptideCDSexonstart_codonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud9899.t1 ID=Gcaud9899.t1|Name=Gcaud9899.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2539bp|location=Sequence derived from alignment at NODE_177_length_40581_cov_4.324031:24001..26539- (Gracilaria caudata M_176_S67 male) ATGCGTGTTCCGCAGTCGAGGGAGGAGAGTGAGAGCGTGTTGGCGCTTAC
TAGAGCAATGCATTATTTGCGCTTCACGCTGATGAAGGCGGTGGAGTTTG
GGGGCGTGCGGGATGTGACGGATGTTTTGTTGAGGGCGGAGAAGGGCGTG
TTGTTGACCGCCGCGGAATTGAGACACATTGCGGATACACTTTCGGCTGC
ACGAAGGATTCGACGCTTTATAGACGCTGAACAGGATGAACGAGTGCTTG
TTTTGAAGAGATTGGTTAGCGATGTGCGAACGTATCCGCAGGTGGATGGC
AGGATTAATGAGCTCATTGACGAGTTTTCACAGGTCGTGGACACTTTTGA
TCCGCCTCTGAGACAGATTCGAGCTGATATTCGCGCCACCAGTTCCGATA
TTAATCAGCGATTGAACCGAATCATGAGCGCTCAGGCGGAGGCTATCCAG
GAACGTCTTGTCACAATGCGCTACGATCGCTTTGTCATTCCTGTCAAGAC
GCCGAGGAAGGCGTTGTTCAAACGCGCCGTCGTGCATGATGTGAGTGCGT
CGGGTGGTACTACGTATCTGGAACCTGCTGCAGTGCGTCATCTTAATGAT
CGACTTCGCATGCTTGCAGCGAAGGAACGGGCCAGAATTGACAAGGTTTT
GAGGGAGCTTACGGAGTTGGTGGCGCCTTTGCGAGAAGACATTACTCACT
TGTGTGACGTGATTTGTCAACTGGATGTTGCCGCCGCAAAGGCAAATGCT
TCCAATGAACTGGGCGCCGTGGACGTGCAGTTTGACGATACCAAACCGCT
GCGTTTGCTGGGCGTGCGTCATCCGCTACTGTCGTGGCGCGCCATGACGA
GAACTCAATCTGCAGAGCAACAAGGCGCCTCGCGGGGATCTTCGCTACAC
GAAGAGCCGCTGTGGAAGCGGGAGGTCGTACCGACAAATTACCAACTCTC
GCACGACGTTCGATGCGTCTGTGTTACCGGTCCGAATACTGGAGGGAAGA
CACTGGCTTTGAAGACGCTTGGCGTGTCGGTGCTCATGGCGAAGGCGGGC
ATGTTTGTGCCGGCTGTTTTGGACAAGAGCGGACACGAGGACGAGGTGAG
CGCGCATCTGCCGTACTTTGATAACGTGCTCGCCGACATTGGTGATGATC
AATCGCTTGTACAGTCATTGTCCACTTTCTCGGGACACGTCGAGAGAATC
AAACGTATTCTCGCCGCAAGCACGTCTGAGTCGCTGGTTTTGTTGGACGA
GATTGGATCTGGAACGGTACGTACTTGTCTTTTTCCGTCTTTGCAAATGG
TCGACAAGCAGAATGATTTGGAAACGGCGTCTTTGACTAACCTGCGTTCA
CTGTTGATTGTTTATCTCAAACGTTTTTGTGCATACGTAGGATCCGGCTG
AAGGGGCTGCGTTGGGAATGTCCATTCTGAGGCACCTGGCCGTTGGCAAT
CGAGCGGCACTTACTTTTGCTACTACACATCATGGAGAACTGAAGACTTT
GAAGTATTCTAAGGACAGCTCTGCGCGATTCTTCGAGAATGCTAGCGTGG
AGTTTGACGATGTGAACATGGTACCGACGTACCGATTGGTGTGGGGGATA
CCGGGAAGGTCGAACGCGCTAGCGATCGCGGAACGACTCGGAATGGAACC
GTCTGTGATCGAGGAGGCGCGTTTCCTGCTGAACGGGGCTGATGACGAGA
ACGGGTCAAGCACGCGAGTGGACATCGAAAAGATGATTTACAGTCTTGAG
CAAGACAAGAACGCTGCAGAAGCTGCGCGCGAGGATTCGGAACGCGCGTT
GCGAGAAGCGAGCGCAATGCGTTCTGAGCTGGAAAGCCGACTCGGTAGAC
TTCGCGAGAATGAAGCACAGTTGAGAAAGGATCAGAAAAACGCAATGAAT
GAGGAGGTGAAGCTGGCGAAGCAACAAATAGCTAAGGTAATTCGCGAGAT
GCAAAGAGGCGGGGGTTCTGCACAGGCTGCGGGACGTGCTTCTGAGAAGC
TTGGGAAGCTGAAAGTTCCGGGCTCTGAGGCTTCTTCATCGCAAGTGGTG
CGAACAGGGCCATTCAATGTGGATGACATTACGGAAGGTGATAAGGTGAC
TGTGCCAAGGCTCAGCGTGAATGAGGTAGAGGTGGTAGAAAAGCTGAGCA
AGAAGGAACTAATGGTGGCGATTGGAGCTATGAGAGCAAAGGTGAAGGTC
AAAGAAATTGTATCGGTGAATCACAGAAAGAGCGATCAATCAAATATACC
TTCAAAACGTAGAAGAGGGGGCGAAACGAGCAAGAAGCAGCTCAGAGTTC
GTACGGCTGCCAACACAATTGATATTAGAGGGCAGAGAGTAGATTCGGCG
CAGCCTTTGGTGGACCAGGCAATCAGCAAGGCGCTCGCGATGGGAACGTT
GTGGGTTATACACGGACACGGAACTGGTCGTCTGAGGGATGGGATCAGAG
AGTTTTTGTCACAGCATGAACTGGTGGAAAGACTATCGTACGCAGAGCAG
GAGGAGGGCGGCACAGGGGTTACGGTAGCGTTTCTGTAA back to topCoding sequence (CDS) from alignment at NODE_177_length_40581_cov_4.324031:24001..26539- >Gcaud9899.t1 ID=Gcaud9899.t1|Name=Gcaud9899.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2415bp|location=Sequence derived from alignment at NODE_177_length_40581_cov_4.324031:24001..26539- (Gracilaria caudata M_176_S67 male) ATGCGTGTTCCGCAGTCGAGGGAGGAGAGTGAGAGCGTGTTGGCGCTTAC TAGAGCAATGCATTATTTGCGCTTCACGCTGATGAAGGCGGTGGAGTTTG GGGGCGTGCGGGATGTGACGGATGTTTTGTTGAGGGCGGAGAAGGGCGTG TTGTTGACCGCCGCGGAATTGAGACACATTGCGGATACACTTTCGGCTGC ACGAAGGATTCGACGCTTTATAGACGCTGAACAGGATGAACGAGTGCTTG TTTTGAAGAGATTGGTTAGCGATGTGCGAACGTATCCGCAGGTGGATGGC AGGATTAATGAGCTCATTGACGAGTTTTCACAGGTCGTGGACACTTTTGA TCCGCCTCTGAGACAGATTCGAGCTGATATTCGCGCCACCAGTTCCGATA TTAATCAGCGATTGAACCGAATCATGAGCGCTCAGGCGGAGGCTATCCAG GAACGTCTTGTCACAATGCGCTACGATCGCTTTGTCATTCCTGTCAAGAC GCCGAGGAAGGCGTTGTTCAAACGCGCCGTCGTGCATGATGTGAGTGCGT CGGGTGGTACTACGTATCTGGAACCTGCTGCAGTGCGTCATCTTAATGAT CGACTTCGCATGCTTGCAGCGAAGGAACGGGCCAGAATTGACAAGGTTTT GAGGGAGCTTACGGAGTTGGTGGCGCCTTTGCGAGAAGACATTACTCACT TGTGTGACGTGATTTGTCAACTGGATGTTGCCGCCGCAAAGGCAAATGCT TCCAATGAACTGGGCGCCGTGGACGTGCAGTTTGACGATACCAAACCGCT GCGTTTGCTGGGCGTGCGTCATCCGCTACTGTCGTGGCGCGCCATGACGA GAACTCAATCTGCAGAGCAACAAGGCGCCTCGCGGGGATCTTCGCTACAC GAAGAGCCGCTGTGGAAGCGGGAGGTCGTACCGACAAATTACCAACTCTC GCACGACGTTCGATGCGTCTGTGTTACCGGTCCGAATACTGGAGGGAAGA CACTGGCTTTGAAGACGCTTGGCGTGTCGGTGCTCATGGCGAAGGCGGGC ATGTTTGTGCCGGCTGTTTTGGACAAGAGCGGACACGAGGACGAGGTGAG CGCGCATCTGCCGTACTTTGATAACGTGCTCGCCGACATTGGTGATGATC AATCGCTTGTACAGTCATTGTCCACTTTCTCGGGACACGTCGAGAGAATC AAACGTATTCTCGCCGCAAGCACGTCTGAGTCGCTGGTTTTGTTGGACGA GATTGGATCTGGAACGGATCCGGCTGAAGGGGCTGCGTTGGGAATGTCCA TTCTGAGGCACCTGGCCGTTGGCAATCGAGCGGCACTTACTTTTGCTACT ACACATCATGGAGAACTGAAGACTTTGAAGTATTCTAAGGACAGCTCTGC GCGATTCTTCGAGAATGCTAGCGTGGAGTTTGACGATGTGAACATGGTAC CGACGTACCGATTGGTGTGGGGGATACCGGGAAGGTCGAACGCGCTAGCG ATCGCGGAACGACTCGGAATGGAACCGTCTGTGATCGAGGAGGCGCGTTT CCTGCTGAACGGGGCTGATGACGAGAACGGGTCAAGCACGCGAGTGGACA TCGAAAAGATGATTTACAGTCTTGAGCAAGACAAGAACGCTGCAGAAGCT GCGCGCGAGGATTCGGAACGCGCGTTGCGAGAAGCGAGCGCAATGCGTTC TGAGCTGGAAAGCCGACTCGGTAGACTTCGCGAGAATGAAGCACAGTTGA GAAAGGATCAGAAAAACGCAATGAATGAGGAGGTGAAGCTGGCGAAGCAA CAAATAGCTAAGGTAATTCGCGAGATGCAAAGAGGCGGGGGTTCTGCACA GGCTGCGGGACGTGCTTCTGAGAAGCTTGGGAAGCTGAAAGTTCCGGGCT CTGAGGCTTCTTCATCGCAAGTGGTGCGAACAGGGCCATTCAATGTGGAT GACATTACGGAAGGTGATAAGGTGACTGTGCCAAGGCTCAGCGTGAATGA GGTAGAGGTGGTAGAAAAGCTGAGCAAGAAGGAACTAATGGTGGCGATTG GAGCTATGAGAGCAAAGGTGAAGGTCAAAGAAATTGTATCGGTGAATCAC AGAAAGAGCGATCAATCAAATATACCTTCAAAACGTAGAAGAGGGGGCGA AACGAGCAAGAAGCAGCTCAGAGTTCGTACGGCTGCCAACACAATTGATA TTAGAGGGCAGAGAGTAGATTCGGCGCAGCCTTTGGTGGACCAGGCAATC AGCAAGGCGCTCGCGATGGGAACGTTGTGGGTTATACACGGACACGGAAC TGGTCGTCTGAGGGATGGGATCAGAGAGTTTTTGTCACAGCATGAACTGG TGGAAAGACTATCGTACGCAGAGCAGGAGGAGGGCGGCACAGGGGTTACG GTAGCGTTTCTGTAA back to top
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