Gcaud9893.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud9893.t1
Unique NameGcaud9893.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length564
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_177_length_40581_cov_4.324031contigNODE_177_length_40581_cov_4.324031:7548..9239 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMR121CT
PFAMsIlvC,IlvN
Max annot lvl2759|Eukaryota
KEGG rclassRC00726,RC00836,RC00837,RC01726
KEGG koko:K00053
KEGG ReactionR03051,R04439,R04440,R05068,R05069,R05071
KEGG Pathwayko00290,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00770,map01100,map01110,map01130,map01210,map01230
KEGG ModuleM00019,M00570
GOsGO:0000166,GO:0000287,GO:0003674,GO:0005488,GO:0005507,GO:0005515,GO:0005575,GO:0005576,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0008150,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009941,GO:0010035,GO:0010038,GO:0030312,GO:0031967,GO:0031975,GO:0036094,GO:0042221,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046686,GO:0046872,GO:0046914,GO:0046983,GO:0048037,GO:0048046,GO:0050661,GO:0050662,GO:0050896,GO:0070402,GO:0071944,GO:0097159,GO:1901265,GO:1901363
Evalue6.94e-248
EggNOG OGsCOG0059@1|root,2QQBF@2759|Eukaryota
EC1.1.1.86
Descriptionketol-acid reductoisomerase activity
COG categoryEH
BiGG ReactioniRC1080.CRv4_Au5_s10_g343_t1
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9893Gcaud9893Gracilaria caudata M_176_S67 malegeneNODE_177_length_40581_cov_4.324031 7548..9239 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9893.t1.stop1Gcaud9893.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_177_length_40581_cov_4.324031 7548..7550 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9893.t1.CDS1Gcaud9893.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_177_length_40581_cov_4.324031 7548..9239 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9893.t1.exon1Gcaud9893.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_177_length_40581_cov_4.324031 7548..9239 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9893.t1.start1Gcaud9893.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_177_length_40581_cov_4.324031 9237..9239 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9893.t1Gcaud9893.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_177_length_40581_cov_4.324031 7548..9239 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud9893.t1 ID=Gcaud9893.t1|Name=Gcaud9893.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=564bp
MSAFTPSVWLGASAPSKSHFVSSSIASIRPHVARATRSPVRIVTMSVPSV
TEERAKAADFDTKCFKKERITLAETVEYIVRGGRDVFSSLPSAFASVKQI
GVIGWGSQGPAQAQNLRDSFRDANVDAKVVVGLRSGSSSLAQARKAGFTE
ENGTLGEMYKVISESDFVILLISDAATANCYKKVFAAMKPGATLGLSHGF
LLGHMDSIGETFPDDISVILVAPKGMGPSVRKLYVQGKTENGAGINCSFA
VERDVDGKATDLAIGWAVAIGAPFSFQTTLRNEYRSDIFGERCILLGAIH
GVCESLWRRFVLDKGMDEEEAFVRSTECITGPVSRVISKRGIKAVYTDMN
DEDRAIFAKAYCAAYEPAYEIVVECYEDVECGNEIRSVIAAGNRAKRFPV
ISPIDGTRMWKVGEVVRSKRSAATENIIDPFSAGVYCATMMAQIDVLLEK
GHVLSEIINESVIESVDSLSPYMHARGVAYMVFNCSFTAATGSKKWAPRF
DYNLSQRAYTAIDNGDSLNMKRLDDFLNHKIHPAVLECAKLRPSVDISLT
GTGSDDAARASLS*
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spliced messenger RNA

>Gcaud9893.t1 ID=Gcaud9893.t1|Name=Gcaud9893.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1692bp|location=Sequence derived from alignment at NODE_177_length_40581_cov_4.324031:7548..9239- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGCCTTCACCCCCTCCGTGTGGCTCGGCGCTTCCGCCCCTTCAAA
ATCGCACTTCGTTTCATCATCCATCGCATCGATCCGCCCACACGTCGCCC
GCGCCACGCGCAGCCCCGTGCGCATCGTCACAATGTCCGTGCCGTCCGTC
ACAGAGGAGCGTGCAAAGGCCGCCGACTTTGATACCAAATGCTTCAAAAA
AGAGCGTATCACGCTTGCAGAGACGGTCGAGTACATAGTTCGAGGAGGAC
GGGATGTGTTCTCCAGTCTCCCGAGCGCGTTCGCCTCCGTGAAGCAGATA
GGTGTCATTGGCTGGGGAAGTCAGGGTCCGGCACAGGCCCAGAATTTGAG
GGACTCTTTCCGTGATGCCAACGTTGACGCAAAGGTTGTTGTTGGACTGC
GAAGTGGATCGTCTTCCCTAGCTCAGGCTAGGAAAGCTGGCTTTACAGAG
GAGAACGGAACCCTCGGCGAGATGTACAAGGTTATTTCGGAAAGTGATTT
TGTCATCCTCCTTATTTCTGATGCGGCCACCGCGAATTGTTACAAGAAGG
TGTTTGCCGCTATGAAGCCTGGCGCCACTCTTGGTTTGTCGCATGGTTTC
CTTCTTGGTCACATGGACTCCATCGGCGAGACGTTCCCTGATGATATTAG
TGTCATTCTTGTGGCACCGAAGGGCATGGGCCCATCTGTTAGAAAGCTCT
ATGTCCAAGGGAAGACTGAGAACGGCGCGGGTATCAACTGCTCCTTTGCA
GTCGAAAGAGATGTGGACGGCAAAGCAACCGATCTTGCCATTGGATGGGC
TGTAGCCATAGGCGCCCCGTTTAGCTTCCAGACTACTCTTAGAAACGAAT
ACCGCTCTGATATTTTTGGTGAACGTTGCATTCTTCTGGGTGCTATCCAT
GGTGTGTGCGAAAGTTTGTGGAGACGATTTGTGCTGGATAAGGGCATGGA
TGAAGAAGAGGCATTCGTACGTTCTACTGAGTGTATCACTGGACCTGTGT
CACGAGTGATATCAAAGAGAGGTATCAAGGCTGTATACACCGATATGAAC
GATGAGGATCGAGCAATCTTCGCCAAAGCTTATTGTGCTGCTTATGAGCC
AGCTTATGAGATTGTCGTTGAATGTTATGAAGATGTTGAATGTGGAAATG
AGATCCGGTCTGTTATTGCCGCGGGAAACCGAGCTAAGAGATTCCCGGTT
ATCTCGCCAATTGATGGCACTCGAATGTGGAAGGTCGGTGAGGTTGTGCG
TAGCAAACGCTCTGCTGCGACTGAAAATATTATTGACCCGTTCTCTGCAG
GGGTGTACTGTGCTACAATGATGGCACAGATTGATGTGCTACTAGAGAAG
GGTCACGTATTATCCGAGATCATCAACGAATCTGTCATTGAATCTGTTGA
CAGTCTCTCACCGTATATGCATGCTAGAGGTGTCGCGTACATGGTCTTCA
ACTGCTCGTTTACTGCTGCGACGGGCAGTAAGAAGTGGGCTCCAAGATTT
GACTACAACCTCTCTCAGAGGGCATATACTGCCATTGACAATGGCGACTC
GCTTAATATGAAGCGCTTGGATGACTTCCTGAACCATAAGATTCACCCTG
CTGTGCTGGAGTGTGCCAAGTTGCGCCCTTCCGTCGACATTTCGCTCACC
GGAACCGGTTCAGATGATGCGGCCCGAGCAAGTCTTTCGTGA
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protein sequence of Gcaud9893.t1

>Gcaud9893.t1 ID=Gcaud9893.t1|Name=Gcaud9893.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=564bp
MSAFTPSVWLGASAPSKSHFVSSSIASIRPHVARATRSPVRIVTMSVPSV
TEERAKAADFDTKCFKKERITLAETVEYIVRGGRDVFSSLPSAFASVKQI
GVIGWGSQGPAQAQNLRDSFRDANVDAKVVVGLRSGSSSLAQARKAGFTE
ENGTLGEMYKVISESDFVILLISDAATANCYKKVFAAMKPGATLGLSHGF
LLGHMDSIGETFPDDISVILVAPKGMGPSVRKLYVQGKTENGAGINCSFA
VERDVDGKATDLAIGWAVAIGAPFSFQTTLRNEYRSDIFGERCILLGAIH
GVCESLWRRFVLDKGMDEEEAFVRSTECITGPVSRVISKRGIKAVYTDMN
DEDRAIFAKAYCAAYEPAYEIVVECYEDVECGNEIRSVIAAGNRAKRFPV
ISPIDGTRMWKVGEVVRSKRSAATENIIDPFSAGVYCATMMAQIDVLLEK
GHVLSEIINESVIESVDSLSPYMHARGVAYMVFNCSFTAATGSKKWAPRF
DYNLSQRAYTAIDNGDSLNMKRLDDFLNHKIHPAVLECAKLRPSVDISLT
GTGSDDAARASLS*
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mRNA from alignment at NODE_177_length_40581_cov_4.324031:7548..9239-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud9893.t1 ID=Gcaud9893.t1|Name=Gcaud9893.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1692bp|location=Sequence derived from alignment at NODE_177_length_40581_cov_4.324031:7548..9239- (Gracilaria caudata M_176_S67 male)
ATGTCCGCCTTCACCCCCTCCGTGTGGCTCGGCGCTTCCGCCCCTTCAAA
ATCGCACTTCGTTTCATCATCCATCGCATCGATCCGCCCACACGTCGCCC
GCGCCACGCGCAGCCCCGTGCGCATCGTCACAATGTCCGTGCCGTCCGTC
ACAGAGGAGCGTGCAAAGGCCGCCGACTTTGATACCAAATGCTTCAAAAA
AGAGCGTATCACGCTTGCAGAGACGGTCGAGTACATAGTTCGAGGAGGAC
GGGATGTGTTCTCCAGTCTCCCGAGCGCGTTCGCCTCCGTGAAGCAGATA
GGTGTCATTGGCTGGGGAAGTCAGGGTCCGGCACAGGCCCAGAATTTGAG
GGACTCTTTCCGTGATGCCAACGTTGACGCAAAGGTTGTTGTTGGACTGC
GAAGTGGATCGTCTTCCCTAGCTCAGGCTAGGAAAGCTGGCTTTACAGAG
GAGAACGGAACCCTCGGCGAGATGTACAAGGTTATTTCGGAAAGTGATTT
TGTCATCCTCCTTATTTCTGATGCGGCCACCGCGAATTGTTACAAGAAGG
TGTTTGCCGCTATGAAGCCTGGCGCCACTCTTGGTTTGTCGCATGGTTTC
CTTCTTGGTCACATGGACTCCATCGGCGAGACGTTCCCTGATGATATTAG
TGTCATTCTTGTGGCACCGAAGGGCATGGGCCCATCTGTTAGAAAGCTCT
ATGTCCAAGGGAAGACTGAGAACGGCGCGGGTATCAACTGCTCCTTTGCA
GTCGAAAGAGATGTGGACGGCAAAGCAACCGATCTTGCCATTGGATGGGC
TGTAGCCATAGGCGCCCCGTTTAGCTTCCAGACTACTCTTAGAAACGAAT
ACCGCTCTGATATTTTTGGTGAACGTTGCATTCTTCTGGGTGCTATCCAT
GGTGTGTGCGAAAGTTTGTGGAGACGATTTGTGCTGGATAAGGGCATGGA
TGAAGAAGAGGCATTCGTACGTTCTACTGAGTGTATCACTGGACCTGTGT
CACGAGTGATATCAAAGAGAGGTATCAAGGCTGTATACACCGATATGAAC
GATGAGGATCGAGCAATCTTCGCCAAAGCTTATTGTGCTGCTTATGAGCC
AGCTTATGAGATTGTCGTTGAATGTTATGAAGATGTTGAATGTGGAAATG
AGATCCGGTCTGTTATTGCCGCGGGAAACCGAGCTAAGAGATTCCCGGTT
ATCTCGCCAATTGATGGCACTCGAATGTGGAAGGTCGGTGAGGTTGTGCG
TAGCAAACGCTCTGCTGCGACTGAAAATATTATTGACCCGTTCTCTGCAG
GGGTGTACTGTGCTACAATGATGGCACAGATTGATGTGCTACTAGAGAAG
GGTCACGTATTATCCGAGATCATCAACGAATCTGTCATTGAATCTGTTGA
CAGTCTCTCACCGTATATGCATGCTAGAGGTGTCGCGTACATGGTCTTCA
ACTGCTCGTTTACTGCTGCGACGGGCAGTAAGAAGTGGGCTCCAAGATTT
GACTACAACCTCTCTCAGAGGGCATATACTGCCATTGACAATGGCGACTC
GCTTAATATGAAGCGCTTGGATGACTTCCTGAACCATAAGATTCACCCTG
CTGTGCTGGAGTGTGCCAAGTTGCGCCCTTCCGTCGACATTTCGCTCACC
GGAACCGGTTCAGATGATGCGGCCCGAGCAAGTCTTTCGTGA
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Coding sequence (CDS) from alignment at NODE_177_length_40581_cov_4.324031:7548..9239-

>Gcaud9893.t1 ID=Gcaud9893.t1|Name=Gcaud9893.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1692bp|location=Sequence derived from alignment at NODE_177_length_40581_cov_4.324031:7548..9239- (Gracilaria caudata M_176_S67 male)
ATGTCCGCCTTCACCCCCTCCGTGTGGCTCGGCGCTTCCGCCCCTTCAAA
ATCGCACTTCGTTTCATCATCCATCGCATCGATCCGCCCACACGTCGCCC
GCGCCACGCGCAGCCCCGTGCGCATCGTCACAATGTCCGTGCCGTCCGTC
ACAGAGGAGCGTGCAAAGGCCGCCGACTTTGATACCAAATGCTTCAAAAA
AGAGCGTATCACGCTTGCAGAGACGGTCGAGTACATAGTTCGAGGAGGAC
GGGATGTGTTCTCCAGTCTCCCGAGCGCGTTCGCCTCCGTGAAGCAGATA
GGTGTCATTGGCTGGGGAAGTCAGGGTCCGGCACAGGCCCAGAATTTGAG
GGACTCTTTCCGTGATGCCAACGTTGACGCAAAGGTTGTTGTTGGACTGC
GAAGTGGATCGTCTTCCCTAGCTCAGGCTAGGAAAGCTGGCTTTACAGAG
GAGAACGGAACCCTCGGCGAGATGTACAAGGTTATTTCGGAAAGTGATTT
TGTCATCCTCCTTATTTCTGATGCGGCCACCGCGAATTGTTACAAGAAGG
TGTTTGCCGCTATGAAGCCTGGCGCCACTCTTGGTTTGTCGCATGGTTTC
CTTCTTGGTCACATGGACTCCATCGGCGAGACGTTCCCTGATGATATTAG
TGTCATTCTTGTGGCACCGAAGGGCATGGGCCCATCTGTTAGAAAGCTCT
ATGTCCAAGGGAAGACTGAGAACGGCGCGGGTATCAACTGCTCCTTTGCA
GTCGAAAGAGATGTGGACGGCAAAGCAACCGATCTTGCCATTGGATGGGC
TGTAGCCATAGGCGCCCCGTTTAGCTTCCAGACTACTCTTAGAAACGAAT
ACCGCTCTGATATTTTTGGTGAACGTTGCATTCTTCTGGGTGCTATCCAT
GGTGTGTGCGAAAGTTTGTGGAGACGATTTGTGCTGGATAAGGGCATGGA
TGAAGAAGAGGCATTCGTACGTTCTACTGAGTGTATCACTGGACCTGTGT
CACGAGTGATATCAAAGAGAGGTATCAAGGCTGTATACACCGATATGAAC
GATGAGGATCGAGCAATCTTCGCCAAAGCTTATTGTGCTGCTTATGAGCC
AGCTTATGAGATTGTCGTTGAATGTTATGAAGATGTTGAATGTGGAAATG
AGATCCGGTCTGTTATTGCCGCGGGAAACCGAGCTAAGAGATTCCCGGTT
ATCTCGCCAATTGATGGCACTCGAATGTGGAAGGTCGGTGAGGTTGTGCG
TAGCAAACGCTCTGCTGCGACTGAAAATATTATTGACCCGTTCTCTGCAG
GGGTGTACTGTGCTACAATGATGGCACAGATTGATGTGCTACTAGAGAAG
GGTCACGTATTATCCGAGATCATCAACGAATCTGTCATTGAATCTGTTGA
CAGTCTCTCACCGTATATGCATGCTAGAGGTGTCGCGTACATGGTCTTCA
ACTGCTCGTTTACTGCTGCGACGGGCAGTAAGAAGTGGGCTCCAAGATTT
GACTACAACCTCTCTCAGAGGGCATATACTGCCATTGACAATGGCGACTC
GCTTAATATGAAGCGCTTGGATGACTTCCTGAACCATAAGATTCACCCTG
CTGTGCTGGAGTGTGCCAAGTTGCGCCCTTCCGTCGACATTTCGCTCACC
GGAACCGGTTCAGATGATGCGGCCCGAGCAAGTCTTTCGTGA
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