Gcaud9852.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud9852.t1
Unique Name	Gcaud9852.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	349

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_374_length_28066_cov_4.260947	contig	NODE_374_length_28066_cov_4.260947:1719..2765 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	512565.AMIS_9600
Max annot lvl	201174\|Actinobacteria
Evalue	3.14e-21
EggNOG OGs	COG0596@1\|root,COG0596@2\|Bacteria,2I6SV@201174\|Actinobacteria,4DJF0@85008\|Micromonosporales
Description	alpha/beta hydrolase fold
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9852	Gcaud9852	Gracilaria caudata M_176_S67 male	gene	NODE_374_length_28066_cov_4.260947 1719..2765 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9852.t1.stop1	Gcaud9852.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_374_length_28066_cov_4.260947 1719..1721 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9852.t1.CDS1	Gcaud9852.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_374_length_28066_cov_4.260947 1719..2765 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9852.t1.exon1	Gcaud9852.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_374_length_28066_cov_4.260947 1719..2765 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9852.t1.start1	Gcaud9852.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_374_length_28066_cov_4.260947 2763..2765 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9852.t1	Gcaud9852.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_374_length_28066_cov_4.260947 1719..2765 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_374_length_28066_cov_4.260947:1719..2765-
coding sequence from alignment at NODE_374_length_28066_cov_4.260947:1719..2765-

mRNA sequence

>Gcaud9852.t1 ID=Gcaud9852.t1|Name=Gcaud9852.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=349bp
MSSPHRRSRRAAHSFAIPPLSPALLLALTATGEALARRVERRTPLGQRLV
IRGDNTRRVHVLYHAPPELRHAPCVVMEAGANSWSPVWDDVSRRIGHMAR
VFRYDRAGFGFSDAVRCPKERSVAAVVADLRAALVSAGARPPYVLVAHSL
GALYANVLVKLLQPSEVCGLVYVDGASPQTVSMLERVVPKHTPPYWLARS
LGCSGVLRVLAPLVLPQYTAAFRGELRKHAVATWARGDWLMAYTAEWAAA
LRESKRVVNDGLLHFPPGWLGDTPICVLVPDIYRRTRGRSHIDALQATLA
TYSADARLVHVRNCGHFVHIERPEEVAAAVRAVIARARQKRLIGGYVA*

spliced messenger RNA

>Gcaud9852.t1 ID=Gcaud9852.t1|Name=Gcaud9852.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1047bp|location=Sequence derived from alignment at NODE_374_length_28066_cov_4.260947:1719..2765- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCATCGCCACATCGTCGCAGCCGTCGCGCCGCGCATTCGTTCGCGAT
ACCACCGCTATCGCCCGCGTTGCTACTAGCGCTCACCGCCACAGGCGAGG
CACTAGCGCGTCGCGTCGAGCGTCGCACGCCGCTCGGTCAACGTCTCGTC
ATTCGCGGTGATAATACGCGTCGCGTGCACGTTCTGTACCATGCGCCTCC
CGAACTGCGTCACGCGCCGTGCGTGGTGATGGAGGCGGGCGCGAACAGTT
GGTCGCCCGTGTGGGACGACGTGTCGCGACGCATTGGCCACATGGCGCGC
GTGTTTCGCTACGACCGCGCGGGCTTTGGCTTTTCGGACGCGGTGCGATG
CCCGAAGGAACGCTCTGTTGCGGCGGTTGTGGCGGACCTGCGCGCGGCTT
TGGTGAGCGCCGGTGCGAGGCCGCCTTACGTGTTGGTGGCGCATTCGTTG
GGCGCTTTGTATGCAAATGTGTTGGTGAAGTTGTTACAACCGTCGGAGGT
GTGTGGCTTGGTGTATGTGGACGGCGCGTCGCCGCAGACGGTGAGCATGT
TAGAACGCGTGGTGCCCAAACACACGCCGCCGTACTGGCTGGCGCGCTCG
TTGGGCTGCTCCGGCGTGCTGCGCGTGCTCGCGCCGCTGGTGCTTCCGCA
GTACACGGCCGCGTTTCGCGGCGAGCTTCGCAAACACGCGGTGGCCACCT
GGGCGCGCGGCGACTGGCTCATGGCGTACACCGCCGAATGGGCCGCCGCG
CTTCGCGAAAGCAAGCGCGTGGTGAACGACGGCTTGTTGCACTTCCCGCC
GGGCTGGTTGGGTGATACTCCCATCTGCGTGCTGGTTCCCGACATCTACC
GACGCACGCGCGGACGCTCGCACATCGACGCGTTGCAGGCCACGCTCGCG
ACGTACTCGGCGGACGCGCGGCTGGTGCATGTGCGCAACTGCGGACACTT
TGTGCACATCGAGCGCCCGGAGGAGGTGGCGGCGGCGGTGCGCGCCGTGA
TTGCGCGCGCTAGACAGAAACGACTGATTGGCGGATACGTGGCGTAG

protein sequence of Gcaud9852.t1

>Gcaud9852.t1 ID=Gcaud9852.t1|Name=Gcaud9852.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=349bp
MSSPHRRSRRAAHSFAIPPLSPALLLALTATGEALARRVERRTPLGQRLV
IRGDNTRRVHVLYHAPPELRHAPCVVMEAGANSWSPVWDDVSRRIGHMAR
VFRYDRAGFGFSDAVRCPKERSVAAVVADLRAALVSAGARPPYVLVAHSL
GALYANVLVKLLQPSEVCGLVYVDGASPQTVSMLERVVPKHTPPYWLARS
LGCSGVLRVLAPLVLPQYTAAFRGELRKHAVATWARGDWLMAYTAEWAAA
LRESKRVVNDGLLHFPPGWLGDTPICVLVPDIYRRTRGRSHIDALQATLA
TYSADARLVHVRNCGHFVHIERPEEVAAAVRAVIARARQKRLIGGYVA*

mRNA from alignment at NODE_374_length_28066_cov_4.260947:1719..2765-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud9852.t1 ID=Gcaud9852.t1|Name=Gcaud9852.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1047bp|location=Sequence derived from alignment at NODE_374_length_28066_cov_4.260947:1719..2765- (Gracilaria caudata M_176_S67 male)
ATGTCATCGCCACATCGTCGCAGCCGTCGCGCCGCGCATTCGTTCGCGAT
ACCACCGCTATCGCCCGCGTTGCTACTAGCGCTCACCGCCACAGGCGAGG
CACTAGCGCGTCGCGTCGAGCGTCGCACGCCGCTCGGTCAACGTCTCGTC
ATTCGCGGTGATAATACGCGTCGCGTGCACGTTCTGTACCATGCGCCTCC
CGAACTGCGTCACGCGCCGTGCGTGGTGATGGAGGCGGGCGCGAACAGTT
GGTCGCCCGTGTGGGACGACGTGTCGCGACGCATTGGCCACATGGCGCGC
GTGTTTCGCTACGACCGCGCGGGCTTTGGCTTTTCGGACGCGGTGCGATG
CCCGAAGGAACGCTCTGTTGCGGCGGTTGTGGCGGACCTGCGCGCGGCTT
TGGTGAGCGCCGGTGCGAGGCCGCCTTACGTGTTGGTGGCGCATTCGTTG
GGCGCTTTGTATGCAAATGTGTTGGTGAAGTTGTTACAACCGTCGGAGGT
GTGTGGCTTGGTGTATGTGGACGGCGCGTCGCCGCAGACGGTGAGCATGT
TAGAACGCGTGGTGCCCAAACACACGCCGCCGTACTGGCTGGCGCGCTCG
TTGGGCTGCTCCGGCGTGCTGCGCGTGCTCGCGCCGCTGGTGCTTCCGCA
GTACACGGCCGCGTTTCGCGGCGAGCTTCGCAAACACGCGGTGGCCACCT
GGGCGCGCGGCGACTGGCTCATGGCGTACACCGCCGAATGGGCCGCCGCG
CTTCGCGAAAGCAAGCGCGTGGTGAACGACGGCTTGTTGCACTTCCCGCC
GGGCTGGTTGGGTGATACTCCCATCTGCGTGCTGGTTCCCGACATCTACC
GACGCACGCGCGGACGCTCGCACATCGACGCGTTGCAGGCCACGCTCGCG
ACGTACTCGGCGGACGCGCGGCTGGTGCATGTGCGCAACTGCGGACACTT
TGTGCACATCGAGCGCCCGGAGGAGGTGGCGGCGGCGGTGCGCGCCGTGA
TTGCGCGCGCTAGACAGAAACGACTGATTGGCGGATACGTGGCGTAG

Coding sequence (CDS) from alignment at NODE_374_length_28066_cov_4.260947:1719..2765-

>Gcaud9852.t1 ID=Gcaud9852.t1|Name=Gcaud9852.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1047bp|location=Sequence derived from alignment at NODE_374_length_28066_cov_4.260947:1719..2765- (Gracilaria caudata M_176_S67 male)
ATGTCATCGCCACATCGTCGCAGCCGTCGCGCCGCGCATTCGTTCGCGAT
ACCACCGCTATCGCCCGCGTTGCTACTAGCGCTCACCGCCACAGGCGAGG
CACTAGCGCGTCGCGTCGAGCGTCGCACGCCGCTCGGTCAACGTCTCGTC
ATTCGCGGTGATAATACGCGTCGCGTGCACGTTCTGTACCATGCGCCTCC
CGAACTGCGTCACGCGCCGTGCGTGGTGATGGAGGCGGGCGCGAACAGTT
GGTCGCCCGTGTGGGACGACGTGTCGCGACGCATTGGCCACATGGCGCGC
GTGTTTCGCTACGACCGCGCGGGCTTTGGCTTTTCGGACGCGGTGCGATG
CCCGAAGGAACGCTCTGTTGCGGCGGTTGTGGCGGACCTGCGCGCGGCTT
TGGTGAGCGCCGGTGCGAGGCCGCCTTACGTGTTGGTGGCGCATTCGTTG
GGCGCTTTGTATGCAAATGTGTTGGTGAAGTTGTTACAACCGTCGGAGGT
GTGTGGCTTGGTGTATGTGGACGGCGCGTCGCCGCAGACGGTGAGCATGT
TAGAACGCGTGGTGCCCAAACACACGCCGCCGTACTGGCTGGCGCGCTCG
TTGGGCTGCTCCGGCGTGCTGCGCGTGCTCGCGCCGCTGGTGCTTCCGCA
GTACACGGCCGCGTTTCGCGGCGAGCTTCGCAAACACGCGGTGGCCACCT
GGGCGCGCGGCGACTGGCTCATGGCGTACACCGCCGAATGGGCCGCCGCG
CTTCGCGAAAGCAAGCGCGTGGTGAACGACGGCTTGTTGCACTTCCCGCC
GGGCTGGTTGGGTGATACTCCCATCTGCGTGCTGGTTCCCGACATCTACC
GACGCACGCGCGGACGCTCGCACATCGACGCGTTGCAGGCCACGCTCGCG
ACGTACTCGGCGGACGCGCGGCTGGTGCATGTGCGCAACTGCGGACACTT
TGTGCACATCGAGCGCCCGGAGGAGGTGGCGGCGGCGGTGCGCGCCGTGA
TTGCGCGCGCTAGACAGAAACGACTGATTGGCGGATACGTGGCGTAG