Gcaud9851.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud9851.t1
Unique Name	Gcaud9851.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	434

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1575_length_9670_cov_3.711243	contig	NODE_1575_length_9670_cov_3.711243:7514..8815 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9851	Gcaud9851	Gracilaria caudata M_176_S67 male	gene	NODE_1575_length_9670_cov_3.711243 7514..8815 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9851.t1.stop1	Gcaud9851.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1575_length_9670_cov_3.711243 7514..7516 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9851.t1.CDS1	Gcaud9851.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1575_length_9670_cov_3.711243 7514..8815 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9851.t1.exon1	Gcaud9851.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1575_length_9670_cov_3.711243 7514..8815 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9851.t1.start1	Gcaud9851.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1575_length_9670_cov_3.711243 8813..8815 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9851.t1	Gcaud9851.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1575_length_9670_cov_3.711243 7514..8815 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1575_length_9670_cov_3.711243:7514..8815-
coding sequence from alignment at NODE_1575_length_9670_cov_3.711243:7514..8815-

mRNA sequence

>Gcaud9851.t1 ID=Gcaud9851.t1|Name=Gcaud9851.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=434bp
MERHKRTIHAEDKQLCLVCKATLIGAEELRTHLLESHNVHQSTAPIPPVL
NKPPMVLDSPLHPQPAERTNFVSDRNPAVAQANADAHTNHAYIDRDKVVS
LTAQPPPPGASMSIPTQPPPFTMARQSKQGLVNDQPSAPQCPPISGLRMG
LGLEGRAFNDNRVQPERNIQQPISPLHSNSNFPTSEGSPAPKRRCLNLGA
SVPSSTALGGKLQQAVMQINSNNMNSFGPFNKSLRGFEHGAQLNLRVQGQ
MEKPENARNDVSPSAISTLFPQEETPAMSPQSCVMTYGRLQGIESTTDDR
HSLFDHRQRYVHHERRTQGEPNEANELVYRTQQQPTLGFPNQSKMPPLAL
GASNPSLHDFFVTSSPPAETYYGESRELIPQESVPATSGVSDDAFARGPI
ADSREPAPTQVVNSSENRNVDRLGYRVMTTARA*

spliced messenger RNA

>Gcaud9851.t1 ID=Gcaud9851.t1|Name=Gcaud9851.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1302bp|location=Sequence derived from alignment at NODE_1575_length_9670_cov_3.711243:7514..8815- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAACGACATAAGCGTACAATACATGCCGAGGATAAGCAACTATGCTT
GGTCTGCAAGGCTACTCTTATCGGTGCGGAGGAGTTGAGGACGCACTTGT
TGGAGAGCCACAATGTACATCAGTCTACCGCACCAATACCTCCGGTCTTG
AACAAGCCCCCTATGGTTTTGGACTCACCGCTACACCCCCAACCCGCGGA
ACGTACTAATTTTGTGTCCGATCGGAATCCTGCCGTCGCTCAAGCTAATG
CTGACGCACATACTAATCACGCCTATATTGATCGTGACAAGGTTGTCAGC
CTAACAGCTCAACCTCCTCCACCAGGCGCGTCTATGAGTATTCCCACCCA
ACCTCCTCCTTTTACAATGGCTCGACAATCAAAGCAGGGTCTTGTCAACG
ATCAGCCAAGTGCCCCTCAATGCCCGCCTATATCTGGACTGAGAATGGGT
CTTGGCCTTGAGGGCAGAGCTTTTAACGACAATAGAGTGCAACCTGAACG
AAATATCCAGCAACCTATCAGCCCGCTTCATTCCAACTCAAACTTTCCAA
CATCAGAAGGCTCCCCTGCTCCAAAACGCCGATGTTTGAATCTCGGAGCG
AGTGTTCCCTCGTCGACCGCTTTGGGAGGAAAGCTCCAACAAGCCGTTAT
GCAGATCAACTCGAACAACATGAACAGCTTTGGTCCTTTCAACAAGTCAT
TGCGTGGGTTTGAGCACGGTGCTCAGCTTAATCTAAGGGTTCAGGGTCAG
ATGGAGAAGCCTGAAAACGCTCGGAACGATGTGTCACCGAGCGCCATTAG
TACCTTATTTCCTCAGGAAGAAACGCCCGCTATGTCTCCACAGAGCTGTG
TGATGACCTACGGAAGATTGCAAGGAATAGAAAGCACAACTGATGACCGA
CATTCACTATTCGACCACAGGCAGAGATACGTACACCACGAAAGGCGTAC
GCAGGGAGAGCCAAATGAAGCCAACGAACTTGTGTACAGGACACAGCAGC
AACCGACTTTGGGGTTTCCAAACCAGAGCAAAATGCCGCCCCTAGCGCTT
GGAGCATCCAATCCTTCGCTCCACGACTTCTTCGTCACTAGCAGTCCACC
AGCAGAAACGTATTACGGGGAATCAAGGGAACTAATTCCGCAGGAATCAG
TACCTGCGACTAGCGGCGTTTCTGACGACGCCTTTGCTCGAGGACCTATC
GCGGACTCAAGAGAACCTGCACCAACACAGGTTGTGAACTCTTCAGAGAA
TAGAAATGTTGACCGTCTAGGTTACCGAGTAATGACGACGGCTCGAGCAT
AA

protein sequence of Gcaud9851.t1

>Gcaud9851.t1 ID=Gcaud9851.t1|Name=Gcaud9851.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=434bp
MERHKRTIHAEDKQLCLVCKATLIGAEELRTHLLESHNVHQSTAPIPPVL
NKPPMVLDSPLHPQPAERTNFVSDRNPAVAQANADAHTNHAYIDRDKVVS
LTAQPPPPGASMSIPTQPPPFTMARQSKQGLVNDQPSAPQCPPISGLRMG
LGLEGRAFNDNRVQPERNIQQPISPLHSNSNFPTSEGSPAPKRRCLNLGA
SVPSSTALGGKLQQAVMQINSNNMNSFGPFNKSLRGFEHGAQLNLRVQGQ
MEKPENARNDVSPSAISTLFPQEETPAMSPQSCVMTYGRLQGIESTTDDR
HSLFDHRQRYVHHERRTQGEPNEANELVYRTQQQPTLGFPNQSKMPPLAL
GASNPSLHDFFVTSSPPAETYYGESRELIPQESVPATSGVSDDAFARGPI
ADSREPAPTQVVNSSENRNVDRLGYRVMTTARA*

mRNA from alignment at NODE_1575_length_9670_cov_3.711243:7514..8815-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud9851.t1 ID=Gcaud9851.t1|Name=Gcaud9851.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1302bp|location=Sequence derived from alignment at NODE_1575_length_9670_cov_3.711243:7514..8815- (Gracilaria caudata M_176_S67 male)
ATGGAACGACATAAGCGTACAATACATGCCGAGGATAAGCAACTATGCTT
GGTCTGCAAGGCTACTCTTATCGGTGCGGAGGAGTTGAGGACGCACTTGT
TGGAGAGCCACAATGTACATCAGTCTACCGCACCAATACCTCCGGTCTTG
AACAAGCCCCCTATGGTTTTGGACTCACCGCTACACCCCCAACCCGCGGA
ACGTACTAATTTTGTGTCCGATCGGAATCCTGCCGTCGCTCAAGCTAATG
CTGACGCACATACTAATCACGCCTATATTGATCGTGACAAGGTTGTCAGC
CTAACAGCTCAACCTCCTCCACCAGGCGCGTCTATGAGTATTCCCACCCA
ACCTCCTCCTTTTACAATGGCTCGACAATCAAAGCAGGGTCTTGTCAACG
ATCAGCCAAGTGCCCCTCAATGCCCGCCTATATCTGGACTGAGAATGGGT
CTTGGCCTTGAGGGCAGAGCTTTTAACGACAATAGAGTGCAACCTGAACG
AAATATCCAGCAACCTATCAGCCCGCTTCATTCCAACTCAAACTTTCCAA
CATCAGAAGGCTCCCCTGCTCCAAAACGCCGATGTTTGAATCTCGGAGCG
AGTGTTCCCTCGTCGACCGCTTTGGGAGGAAAGCTCCAACAAGCCGTTAT
GCAGATCAACTCGAACAACATGAACAGCTTTGGTCCTTTCAACAAGTCAT
TGCGTGGGTTTGAGCACGGTGCTCAGCTTAATCTAAGGGTTCAGGGTCAG
ATGGAGAAGCCTGAAAACGCTCGGAACGATGTGTCACCGAGCGCCATTAG
TACCTTATTTCCTCAGGAAGAAACGCCCGCTATGTCTCCACAGAGCTGTG
TGATGACCTACGGAAGATTGCAAGGAATAGAAAGCACAACTGATGACCGA
CATTCACTATTCGACCACAGGCAGAGATACGTACACCACGAAAGGCGTAC
GCAGGGAGAGCCAAATGAAGCCAACGAACTTGTGTACAGGACACAGCAGC
AACCGACTTTGGGGTTTCCAAACCAGAGCAAAATGCCGCCCCTAGCGCTT
GGAGCATCCAATCCTTCGCTCCACGACTTCTTCGTCACTAGCAGTCCACC
AGCAGAAACGTATTACGGGGAATCAAGGGAACTAATTCCGCAGGAATCAG
TACCTGCGACTAGCGGCGTTTCTGACGACGCCTTTGCTCGAGGACCTATC
GCGGACTCAAGAGAACCTGCACCAACACAGGTTGTGAACTCTTCAGAGAA
TAGAAATGTTGACCGTCTAGGTTACCGAGTAATGACGACGGCTCGAGCAT
AA

Coding sequence (CDS) from alignment at NODE_1575_length_9670_cov_3.711243:7514..8815-

>Gcaud9851.t1 ID=Gcaud9851.t1|Name=Gcaud9851.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1302bp|location=Sequence derived from alignment at NODE_1575_length_9670_cov_3.711243:7514..8815- (Gracilaria caudata M_176_S67 male)
ATGGAACGACATAAGCGTACAATACATGCCGAGGATAAGCAACTATGCTT
GGTCTGCAAGGCTACTCTTATCGGTGCGGAGGAGTTGAGGACGCACTTGT
TGGAGAGCCACAATGTACATCAGTCTACCGCACCAATACCTCCGGTCTTG
AACAAGCCCCCTATGGTTTTGGACTCACCGCTACACCCCCAACCCGCGGA
ACGTACTAATTTTGTGTCCGATCGGAATCCTGCCGTCGCTCAAGCTAATG
CTGACGCACATACTAATCACGCCTATATTGATCGTGACAAGGTTGTCAGC
CTAACAGCTCAACCTCCTCCACCAGGCGCGTCTATGAGTATTCCCACCCA
ACCTCCTCCTTTTACAATGGCTCGACAATCAAAGCAGGGTCTTGTCAACG
ATCAGCCAAGTGCCCCTCAATGCCCGCCTATATCTGGACTGAGAATGGGT
CTTGGCCTTGAGGGCAGAGCTTTTAACGACAATAGAGTGCAACCTGAACG
AAATATCCAGCAACCTATCAGCCCGCTTCATTCCAACTCAAACTTTCCAA
CATCAGAAGGCTCCCCTGCTCCAAAACGCCGATGTTTGAATCTCGGAGCG
AGTGTTCCCTCGTCGACCGCTTTGGGAGGAAAGCTCCAACAAGCCGTTAT
GCAGATCAACTCGAACAACATGAACAGCTTTGGTCCTTTCAACAAGTCAT
TGCGTGGGTTTGAGCACGGTGCTCAGCTTAATCTAAGGGTTCAGGGTCAG
ATGGAGAAGCCTGAAAACGCTCGGAACGATGTGTCACCGAGCGCCATTAG
TACCTTATTTCCTCAGGAAGAAACGCCCGCTATGTCTCCACAGAGCTGTG
TGATGACCTACGGAAGATTGCAAGGAATAGAAAGCACAACTGATGACCGA
CATTCACTATTCGACCACAGGCAGAGATACGTACACCACGAAAGGCGTAC
GCAGGGAGAGCCAAATGAAGCCAACGAACTTGTGTACAGGACACAGCAGC
AACCGACTTTGGGGTTTCCAAACCAGAGCAAAATGCCGCCCCTAGCGCTT
GGAGCATCCAATCCTTCGCTCCACGACTTCTTCGTCACTAGCAGTCCACC
AGCAGAAACGTATTACGGGGAATCAAGGGAACTAATTCCGCAGGAATCAG
TACCTGCGACTAGCGGCGTTTCTGACGACGCCTTTGCTCGAGGACCTATC
GCGGACTCAAGAGAACCTGCACCAACACAGGTTGTGAACTCTTCAGAGAA
TAGAAATGTTGACCGTCTAGGTTACCGAGTAATGACGACGGCTCGAGCAT
AA