Gcaud9847.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud9847.t1
Unique NameGcaud9847.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length335
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2047_length_7075_cov_4.256014contigNODE_2047_length_7075_cov_4.256014:4132..5136 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog985054.JQEZ01000003_gene1733
Preferred nameMA20_36465
PFAMsCyclase
Max annot lvl28211|Alphaproteobacteria
Evalue1.73e-143
EggNOG OGsCOG1878@1|root,COG1878@2|Bacteria,1MVWU@1224|Proteobacteria,2TUQ1@28211|Alphaproteobacteria
DescriptionMetal-dependent hydrolase
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9847Gcaud9847Gracilaria caudata M_176_S67 malegeneNODE_2047_length_7075_cov_4.256014 4132..5136 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9847.t1.stop1Gcaud9847.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_2047_length_7075_cov_4.256014 4132..4134 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9847.t1.CDS1Gcaud9847.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_2047_length_7075_cov_4.256014 4132..5136 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9847.t1.exon1Gcaud9847.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_2047_length_7075_cov_4.256014 4132..5136 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9847.t1.start1Gcaud9847.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_2047_length_7075_cov_4.256014 5134..5136 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9847.t1Gcaud9847.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_2047_length_7075_cov_4.256014 4132..5136 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud9847.t1 ID=Gcaud9847.t1|Name=Gcaud9847.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=335bp
MQNPAPPFRTSATLLLLLALCASSPAATHAQPACPTFDDSSHWTRSPWGP
DDEIGAANRITPRSVLAASRLIKTGNTYNLGTVIDADTPAFAPRTLGITI
VRPNQFDTSGVGLNGFSFNDDIIMGWLGVGSQLDGLGHIGIRGVHYNGFN
ISDFFSTVGLTKLGIEKLPPLVTRGVLLDMAAFYGQRIVPEGTAYSREDI
IAAARQQRVRIRTGDTVLFHAGWLNLLDEPEQNRTRFISAEPGLGVSGAE
YLAEIGVVAVGADTWGLEAVPSEAGASCLFPVHQILMPRNGIFILENMDS
RQMVRDNVREFMFVLGATRLRGTAQVMINPTAIS*
back to top

spliced messenger RNA

>Gcaud9847.t1 ID=Gcaud9847.t1|Name=Gcaud9847.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1005bp|location=Sequence derived from alignment at NODE_2047_length_7075_cov_4.256014:4132..5136- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAAACCCGGCGCCGCCGTTTCGCACGAGCGCCACGCTGCTGTTGCT
GCTCGCGCTCTGCGCCAGCTCACCCGCGGCCACACACGCACAGCCAGCGT
GTCCCACGTTTGACGACTCGAGCCACTGGACGCGATCGCCGTGGGGCCCC
GACGACGAAATCGGCGCCGCGAACCGCATCACGCCGCGCAGCGTGCTGGC
GGCGTCGCGTCTCATCAAAACCGGCAACACGTACAACCTGGGCACCGTCA
TCGACGCCGACACGCCCGCGTTCGCGCCGCGCACGTTGGGCATCACCATT
GTGCGTCCGAACCAGTTTGACACCAGCGGCGTGGGGCTGAATGGTTTTAG
TTTCAACGACGACATCATCATGGGCTGGCTGGGCGTGGGCTCGCAGCTCG
ACGGGCTCGGTCACATCGGCATTCGCGGCGTGCATTACAACGGCTTCAAT
ATCAGCGACTTCTTCAGCACGGTGGGGCTCACAAAGCTGGGCATTGAAAA
GCTACCGCCGCTGGTCACGCGCGGTGTGTTGTTGGACATGGCCGCTTTCT
ATGGGCAGCGTATTGTGCCGGAAGGCACCGCGTACAGCAGAGAAGATATC
ATTGCAGCGGCGCGACAGCAACGCGTGCGCATTCGTACAGGCGATACTGT
GTTGTTCCATGCGGGCTGGTTGAATTTGTTGGACGAGCCGGAACAGAACC
GCACGCGCTTTATCAGCGCTGAGCCGGGCTTGGGCGTATCCGGAGCGGAG
TATCTGGCCGAAATCGGCGTGGTGGCGGTGGGCGCGGACACGTGGGGACT
GGAAGCTGTGCCGTCGGAGGCTGGTGCGAGCTGCCTCTTCCCGGTGCACC
AGATTCTGATGCCGCGCAACGGCATCTTCATTCTGGAGAACATGGACAGT
CGCCAGATGGTGAGGGACAACGTTCGCGAGTTTATGTTTGTTCTAGGTGC
CACGCGTTTGAGAGGCACGGCTCAGGTGATGATCAATCCCACCGCGATTA
GCTGA
back to top

protein sequence of Gcaud9847.t1

>Gcaud9847.t1 ID=Gcaud9847.t1|Name=Gcaud9847.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=335bp
MQNPAPPFRTSATLLLLLALCASSPAATHAQPACPTFDDSSHWTRSPWGP
DDEIGAANRITPRSVLAASRLIKTGNTYNLGTVIDADTPAFAPRTLGITI
VRPNQFDTSGVGLNGFSFNDDIIMGWLGVGSQLDGLGHIGIRGVHYNGFN
ISDFFSTVGLTKLGIEKLPPLVTRGVLLDMAAFYGQRIVPEGTAYSREDI
IAAARQQRVRIRTGDTVLFHAGWLNLLDEPEQNRTRFISAEPGLGVSGAE
YLAEIGVVAVGADTWGLEAVPSEAGASCLFPVHQILMPRNGIFILENMDS
RQMVRDNVREFMFVLGATRLRGTAQVMINPTAIS*
back to top

mRNA from alignment at NODE_2047_length_7075_cov_4.256014:4132..5136-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud9847.t1 ID=Gcaud9847.t1|Name=Gcaud9847.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1005bp|location=Sequence derived from alignment at NODE_2047_length_7075_cov_4.256014:4132..5136- (Gracilaria caudata M_176_S67 male)
ATGCAAAACCCGGCGCCGCCGTTTCGCACGAGCGCCACGCTGCTGTTGCT
GCTCGCGCTCTGCGCCAGCTCACCCGCGGCCACACACGCACAGCCAGCGT
GTCCCACGTTTGACGACTCGAGCCACTGGACGCGATCGCCGTGGGGCCCC
GACGACGAAATCGGCGCCGCGAACCGCATCACGCCGCGCAGCGTGCTGGC
GGCGTCGCGTCTCATCAAAACCGGCAACACGTACAACCTGGGCACCGTCA
TCGACGCCGACACGCCCGCGTTCGCGCCGCGCACGTTGGGCATCACCATT
GTGCGTCCGAACCAGTTTGACACCAGCGGCGTGGGGCTGAATGGTTTTAG
TTTCAACGACGACATCATCATGGGCTGGCTGGGCGTGGGCTCGCAGCTCG
ACGGGCTCGGTCACATCGGCATTCGCGGCGTGCATTACAACGGCTTCAAT
ATCAGCGACTTCTTCAGCACGGTGGGGCTCACAAAGCTGGGCATTGAAAA
GCTACCGCCGCTGGTCACGCGCGGTGTGTTGTTGGACATGGCCGCTTTCT
ATGGGCAGCGTATTGTGCCGGAAGGCACCGCGTACAGCAGAGAAGATATC
ATTGCAGCGGCGCGACAGCAACGCGTGCGCATTCGTACAGGCGATACTGT
GTTGTTCCATGCGGGCTGGTTGAATTTGTTGGACGAGCCGGAACAGAACC
GCACGCGCTTTATCAGCGCTGAGCCGGGCTTGGGCGTATCCGGAGCGGAG
TATCTGGCCGAAATCGGCGTGGTGGCGGTGGGCGCGGACACGTGGGGACT
GGAAGCTGTGCCGTCGGAGGCTGGTGCGAGCTGCCTCTTCCCGGTGCACC
AGATTCTGATGCCGCGCAACGGCATCTTCATTCTGGAGAACATGGACAGT
CGCCAGATGGTGAGGGACAACGTTCGCGAGTTTATGTTTGTTCTAGGTGC
CACGCGTTTGAGAGGCACGGCTCAGGTGATGATCAATCCCACCGCGATTA
GCTGA
back to top

Coding sequence (CDS) from alignment at NODE_2047_length_7075_cov_4.256014:4132..5136-

>Gcaud9847.t1 ID=Gcaud9847.t1|Name=Gcaud9847.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1005bp|location=Sequence derived from alignment at NODE_2047_length_7075_cov_4.256014:4132..5136- (Gracilaria caudata M_176_S67 male)
ATGCAAAACCCGGCGCCGCCGTTTCGCACGAGCGCCACGCTGCTGTTGCT
GCTCGCGCTCTGCGCCAGCTCACCCGCGGCCACACACGCACAGCCAGCGT
GTCCCACGTTTGACGACTCGAGCCACTGGACGCGATCGCCGTGGGGCCCC
GACGACGAAATCGGCGCCGCGAACCGCATCACGCCGCGCAGCGTGCTGGC
GGCGTCGCGTCTCATCAAAACCGGCAACACGTACAACCTGGGCACCGTCA
TCGACGCCGACACGCCCGCGTTCGCGCCGCGCACGTTGGGCATCACCATT
GTGCGTCCGAACCAGTTTGACACCAGCGGCGTGGGGCTGAATGGTTTTAG
TTTCAACGACGACATCATCATGGGCTGGCTGGGCGTGGGCTCGCAGCTCG
ACGGGCTCGGTCACATCGGCATTCGCGGCGTGCATTACAACGGCTTCAAT
ATCAGCGACTTCTTCAGCACGGTGGGGCTCACAAAGCTGGGCATTGAAAA
GCTACCGCCGCTGGTCACGCGCGGTGTGTTGTTGGACATGGCCGCTTTCT
ATGGGCAGCGTATTGTGCCGGAAGGCACCGCGTACAGCAGAGAAGATATC
ATTGCAGCGGCGCGACAGCAACGCGTGCGCATTCGTACAGGCGATACTGT
GTTGTTCCATGCGGGCTGGTTGAATTTGTTGGACGAGCCGGAACAGAACC
GCACGCGCTTTATCAGCGCTGAGCCGGGCTTGGGCGTATCCGGAGCGGAG
TATCTGGCCGAAATCGGCGTGGTGGCGGTGGGCGCGGACACGTGGGGACT
GGAAGCTGTGCCGTCGGAGGCTGGTGCGAGCTGCCTCTTCCCGGTGCACC
AGATTCTGATGCCGCGCAACGGCATCTTCATTCTGGAGAACATGGACAGT
CGCCAGATGGTGAGGGACAACGTTCGCGAGTTTATGTTTGTTCTAGGTGC
CACGCGTTTGAGAGGCACGGCTCAGGTGATGATCAATCCCACCGCGATTA
GCTGA
back to top