Gcaud9840.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud9840.t1
Unique NameGcaud9840.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length218
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_794_length_17858_cov_4.718298contigNODE_794_length_17858_cov_4.718298:2143..2873 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog716544.wcw_0842
PFAMsCob_adeno_trans
Max annot lvl204428|Chlamydiae
KEGG rclassRC00533
KEGG koko:K00798
KEGG ReactionR01492,R05220,R07268
KEGG Pathwayko00860,ko01100,map00860,map01100
KEGG ModuleM00122
Evalue7.66e-58
EggNOG OGsCOG2096@1|root,COG2096@2|Bacteria,2JFYG@204428|Chlamydiae
EC2.5.1.17
DescriptionCobalamin adenosyltransferase
COG categoryS
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9840Gcaud9840Gracilaria caudata M_176_S67 malegeneNODE_794_length_17858_cov_4.718298 2143..2873 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9840.t1Gcaud9840.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_794_length_17858_cov_4.718298 2143..2873 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9840.t1.start1Gcaud9840.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_794_length_17858_cov_4.718298 2143..2145 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9840.t1.CDS1Gcaud9840.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_794_length_17858_cov_4.718298 2143..2234 +
Gcaud9840.t1.CDS2Gcaud9840.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_794_length_17858_cov_4.718298 2312..2873 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9840.t1.exon1Gcaud9840.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_794_length_17858_cov_4.718298 2143..2234 +
Gcaud9840.t1.exon2Gcaud9840.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_794_length_17858_cov_4.718298 2312..2873 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9840.t1.intron1Gcaud9840.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_794_length_17858_cov_4.718298 2235..2311 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9840.t1.stop1Gcaud9840.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_794_length_17858_cov_4.718298 2871..2873 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud9840.t1 ID=Gcaud9840.t1|Name=Gcaud9840.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=218bp
MKIYTRSGDEGETSLFNGSRVPKDHVLVQAYGIVDECNSAIGLAASHLQI
FEPTEEHEHLCDPSERIILIARLQLIQNFLFDLGAYLATPRKKSPTFKVE
RTEFPERAVGDLESWIDDMDSKLPELSTFLLPGGHPASAALHLGRTIARR
AERMLTPLYIGQHREIEPTAYRFLNRLSDFLFVASRMANKIVSVQDVKWR
ENRSALADQANANAPPR*
back to top

spliced messenger RNA

>Gcaud9840.t1 ID=Gcaud9840.t1|Name=Gcaud9840.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=654bp|location=Sequence derived from alignment at NODE_794_length_17858_cov_4.718298:2143..2873+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAATATACACTCGTTCTGGCGACGAAGGTGAAACAAGTCTGTTCAA
CGGATCACGCGTGCCGAAAGATCATGTTTTGGTACAAGCCTATGGGATCG
TCGATGAGTGTAACTCAGCCATCGGCCTGGCCGCGTCTCATTTACAAATC
TTTGAACCAACAGAAGAGCACGAACATTTGTGTGATCCATCCGAGCGAAT
CATATTGATCGCACGTCTGCAACTGATTCAAAACTTTCTGTTCGATCTGG
GCGCCTATCTTGCTACACCGCGCAAGAAATCACCCACGTTCAAAGTGGAA
CGTACCGAGTTTCCAGAGCGAGCTGTAGGCGATCTGGAAAGTTGGATCGA
TGATATGGATTCGAAATTACCTGAGTTGTCTACGTTTTTGCTCCCGGGTG
GACATCCTGCCTCCGCTGCTTTGCATCTCGGTAGAACGATTGCTAGGCGC
GCAGAACGCATGCTAACGCCCTTGTACATTGGACAACACAGGGAGATTGA
ACCGACCGCGTATCGATTTCTTAATCGTCTGTCGGACTTTCTGTTTGTTG
CTTCGAGGATGGCGAACAAGATTGTGTCAGTTCAGGATGTGAAGTGGAGA
GAGAATCGATCGGCTCTTGCTGATCAAGCCAATGCTAACGCGCCGCCTAG
ATGA
back to top

protein sequence of Gcaud9840.t1

>Gcaud9840.t1 ID=Gcaud9840.t1|Name=Gcaud9840.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=218bp
MKIYTRSGDEGETSLFNGSRVPKDHVLVQAYGIVDECNSAIGLAASHLQI
FEPTEEHEHLCDPSERIILIARLQLIQNFLFDLGAYLATPRKKSPTFKVE
RTEFPERAVGDLESWIDDMDSKLPELSTFLLPGGHPASAALHLGRTIARR
AERMLTPLYIGQHREIEPTAYRFLNRLSDFLFVASRMANKIVSVQDVKWR
ENRSALADQANANAPPR*
back to top

mRNA from alignment at NODE_794_length_17858_cov_4.718298:2143..2873+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud9840.t1 ID=Gcaud9840.t1|Name=Gcaud9840.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=731bp|location=Sequence derived from alignment at NODE_794_length_17858_cov_4.718298:2143..2873+ (Gracilaria caudata M_176_S67 male)
ATGAAAATATACACTCGTTCTGGCGACGAAGGTGAAACAAGTCTGTTCAA
CGGATCACGCGTGCCGAAAGATCATGTTTTGGTACAAGCCTAGTAAGTCA
CCGCTGTCTTGATCCGTTGCTGTTCCCGAGTAACTTGTTAAACAAACCAG
CTGACAGTCGCACTTTCAGTGGGATCGTCGATGAGTGTAACTCAGCCATC
GGCCTGGCCGCGTCTCATTTACAAATCTTTGAACCAACAGAAGAGCACGA
ACATTTGTGTGATCCATCCGAGCGAATCATATTGATCGCACGTCTGCAAC
TGATTCAAAACTTTCTGTTCGATCTGGGCGCCTATCTTGCTACACCGCGC
AAGAAATCACCCACGTTCAAAGTGGAACGTACCGAGTTTCCAGAGCGAGC
TGTAGGCGATCTGGAAAGTTGGATCGATGATATGGATTCGAAATTACCTG
AGTTGTCTACGTTTTTGCTCCCGGGTGGACATCCTGCCTCCGCTGCTTTG
CATCTCGGTAGAACGATTGCTAGGCGCGCAGAACGCATGCTAACGCCCTT
GTACATTGGACAACACAGGGAGATTGAACCGACCGCGTATCGATTTCTTA
ATCGTCTGTCGGACTTTCTGTTTGTTGCTTCGAGGATGGCGAACAAGATT
GTGTCAGTTCAGGATGTGAAGTGGAGAGAGAATCGATCGGCTCTTGCTGA
TCAAGCCAATGCTAACGCGCCGCCTAGATGA
back to top

Coding sequence (CDS) from alignment at NODE_794_length_17858_cov_4.718298:2143..2873+

>Gcaud9840.t1 ID=Gcaud9840.t1|Name=Gcaud9840.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=654bp|location=Sequence derived from alignment at NODE_794_length_17858_cov_4.718298:2143..2873+ (Gracilaria caudata M_176_S67 male)
ATGAAAATATACACTCGTTCTGGCGACGAAGGTGAAACAAGTCTGTTCAA
CGGATCACGCGTGCCGAAAGATCATGTTTTGGTACAAGCCTATGGGATCG
TCGATGAGTGTAACTCAGCCATCGGCCTGGCCGCGTCTCATTTACAAATC
TTTGAACCAACAGAAGAGCACGAACATTTGTGTGATCCATCCGAGCGAAT
CATATTGATCGCACGTCTGCAACTGATTCAAAACTTTCTGTTCGATCTGG
GCGCCTATCTTGCTACACCGCGCAAGAAATCACCCACGTTCAAAGTGGAA
CGTACCGAGTTTCCAGAGCGAGCTGTAGGCGATCTGGAAAGTTGGATCGA
TGATATGGATTCGAAATTACCTGAGTTGTCTACGTTTTTGCTCCCGGGTG
GACATCCTGCCTCCGCTGCTTTGCATCTCGGTAGAACGATTGCTAGGCGC
GCAGAACGCATGCTAACGCCCTTGTACATTGGACAACACAGGGAGATTGA
ACCGACCGCGTATCGATTTCTTAATCGTCTGTCGGACTTTCTGTTTGTTG
CTTCGAGGATGGCGAACAAGATTGTGTCAGTTCAGGATGTGAAGTGGAGA
GAGAATCGATCGGCTCTTGCTGATCAAGCCAATGCTAACGCGCCGCCTAG
ATGA
back to top