Gcaud9757.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud9757.t1
Unique NameGcaud9757.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length167
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_9274_length_643_cov_4.373188contigNODE_9274_length_643_cov_4.373188:33..532 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9757Gcaud9757Gracilaria caudata M_176_S67 malegeneNODE_9274_length_643_cov_4.373188 33..532 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9757.t1.CDS1Gcaud9757.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_9274_length_643_cov_4.373188 33..532 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9757.t1.exon1Gcaud9757.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_9274_length_643_cov_4.373188 33..532 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9757.t1.start1Gcaud9757.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_9274_length_643_cov_4.373188 530..532 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9757.t1Gcaud9757.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_9274_length_643_cov_4.373188 33..532 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud9757.t1 ID=Gcaud9757.t1|Name=Gcaud9757.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=167bp
MHRHGRYVTAIENLFHSVNGSVNEFSFVRKRQALGSILDEHIKAGDERVT
KSELKCTEIDRINVYSNGAPKRKDCNAFHGATNIAKRLKAILPPKIGEEK
DGVMAKKANAGLKKIPIDKANAESQNNGRAVFMGHPKHAATMIVRHIVSS
AKLELRVMASNVVHKEX
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spliced messenger RNA

>Gcaud9757.t1 ID=Gcaud9757.t1|Name=Gcaud9757.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=500bp|location=Sequence derived from alignment at NODE_9274_length_643_cov_4.373188:33..532- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATCGCCATGGTAGATATGTAACTGCGATTGAGAACTTGTTTCATAG
CGTTAATGGGAGTGTAAATGAGTTTTCCTTTGTAAGAAAACGGCAGGCCC
TTGGTAGCATACTCGACGAACATATCAAAGCTGGTGATGAACGTGTTACC
AAATCTGAGCTTAAATGTACCGAAATAGACAGAATCAACGTTTATTCAAA
TGGTGCACCGAAACGCAAAGATTGCAATGCCTTCCATGGCGCCACGAACA
TAGCCAAGAGGTTGAAGGCCATTCTGCCCCCAAAGATTGGAGAGGAAAAG
GACGGGGTAATGGCGAAGAAAGCGAACGCCGGTCTCAAAAAGATACCGAT
CGATAAAGCAAACGCAGAAAGCCAGAACAACGGGCGCGCAGTGTTTATGG
GCCATCCAAAGCACGCAGCCACAATGATAGTGAGACACATAGTCTCAAGC
GCAAAGTTGGAATTGCGCGTCATGGCCAGTAATGTGGTCCACAAGGAGGA
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protein sequence of Gcaud9757.t1

>Gcaud9757.t1 ID=Gcaud9757.t1|Name=Gcaud9757.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=167bp
MHRHGRYVTAIENLFHSVNGSVNEFSFVRKRQALGSILDEHIKAGDERVT
KSELKCTEIDRINVYSNGAPKRKDCNAFHGATNIAKRLKAILPPKIGEEK
DGVMAKKANAGLKKIPIDKANAESQNNGRAVFMGHPKHAATMIVRHIVSS
AKLELRVMASNVVHKEX
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mRNA from alignment at NODE_9274_length_643_cov_4.373188:33..532-

Legend: CDSpolypeptideexonstart_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud9757.t1 ID=Gcaud9757.t1|Name=Gcaud9757.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=500bp|location=Sequence derived from alignment at NODE_9274_length_643_cov_4.373188:33..532- (Gracilaria caudata M_176_S67 male)
ATGCATCGCCATGGTAGATATGTAACTGCGATTGAGAACTTGTTTCATAG
CGTTAATGGGAGTGTAAATGAGTTTTCCTTTGTAAGAAAACGGCAGGCCC
TTGGTAGCATACTCGACGAACATATCAAAGCTGGTGATGAACGTGTTACC
AAATCTGAGCTTAAATGTACCGAAATAGACAGAATCAACGTTTATTCAAA
TGGTGCACCGAAACGCAAAGATTGCAATGCCTTCCATGGCGCCACGAACA
TAGCCAAGAGGTTGAAGGCCATTCTGCCCCCAAAGATTGGAGAGGAAAAG
GACGGGGTAATGGCGAAGAAAGCGAACGCCGGTCTCAAAAAGATACCGAT
CGATAAAGCAAACGCAGAAAGCCAGAACAACGGGCGCGCAGTGTTTATGG
GCCATCCAAAGCACGCAGCCACAATGATAGTGAGACACATAGTCTCAAGC
GCAAAGTTGGAATTGCGCGTCATGGCCAGTAATGTGGTCCACAAGGAGGA
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Coding sequence (CDS) from alignment at NODE_9274_length_643_cov_4.373188:33..532-

>Gcaud9757.t1 ID=Gcaud9757.t1|Name=Gcaud9757.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=500bp|location=Sequence derived from alignment at NODE_9274_length_643_cov_4.373188:33..532- (Gracilaria caudata M_176_S67 male)
ATGCATCGCCATGGTAGATATGTAACTGCGATTGAGAACTTGTTTCATAG
CGTTAATGGGAGTGTAAATGAGTTTTCCTTTGTAAGAAAACGGCAGGCCC
TTGGTAGCATACTCGACGAACATATCAAAGCTGGTGATGAACGTGTTACC
AAATCTGAGCTTAAATGTACCGAAATAGACAGAATCAACGTTTATTCAAA
TGGTGCACCGAAACGCAAAGATTGCAATGCCTTCCATGGCGCCACGAACA
TAGCCAAGAGGTTGAAGGCCATTCTGCCCCCAAAGATTGGAGAGGAAAAG
GACGGGGTAATGGCGAAGAAAGCGAACGCCGGTCTCAAAAAGATACCGAT
CGATAAAGCAAACGCAGAAAGCCAGAACAACGGGCGCGCAGTGTTTATGG
GCCATCCAAAGCACGCAGCCACAATGATAGTGAGACACATAGTCTCAAGC
GCAAAGTTGGAATTGCGCGTCATGGCCAGTAATGTGGTCCACAAGGAGGA
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