Gcaud9755.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud9755.t1
Unique Name	Gcaud9755.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	407

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_666_length_19980_cov_4.323898	contig	NODE_666_length_19980_cov_4.323898:15829..17049 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	582515.KR51_00011780
PFAMs	Calx-beta,DUF4114,Exo_endo_phos,GDPD,HemolysinCabind,PhoD,PhoD_N,Phytase,Phytase-like,SurE
Max annot lvl	1117\|Cyanobacteria
KEGG rclass	RC00017,RC00078,RC00425
KEGG ko	ko:K01083,ko:K01113,ko:K01126
KEGG Reaction	R01030,R01470,R03371,R04620
KEGG Pathway	ko00562,ko00564,ko00790,ko01100,ko02020,map00562,map00564,map00790,map01100,map02020
KEGG Module	M00126
Evalue	8.92e-106
EggNOG OGs	COG2931@1\|root,COG3540@1\|root,COG4222@1\|root,COG4247@1\|root,COG2931@2\|Bacteria,COG3540@2\|Bacteria,COG4222@2\|Bacteria,COG4247@2\|Bacteria,1G00S@1117\|Cyanobacteria
EC	3.1.3.1,3.1.3.8,3.1.4.46
Description	PFAM Phytase
COG category	C
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9755	Gcaud9755	Gracilaria caudata M_176_S67 male	gene	NODE_666_length_19980_cov_4.323898 15829..17049 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9755.t1.start1	Gcaud9755.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_666_length_19980_cov_4.323898 15829..15831 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9755.t1.CDS1	Gcaud9755.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_666_length_19980_cov_4.323898 15829..17049 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9755.t1.exon1	Gcaud9755.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_666_length_19980_cov_4.323898 15829..17049 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9755.t1.stop1	Gcaud9755.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_666_length_19980_cov_4.323898 17047..17049 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9755.t1	Gcaud9755.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_666_length_19980_cov_4.323898 15829..17049 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_666_length_19980_cov_4.323898:15829..17049+
coding sequence from alignment at NODE_666_length_19980_cov_4.323898:15829..17049+

mRNA sequence

>Gcaud9755.t1 ID=Gcaud9755.t1|Name=Gcaud9755.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=407bp
MQARISFSTNAKLAAFVFALLVQTAVCSDGSKECNFSPSVKLERKVSLRV
ASFNAALNRFNEGDLLEETKSEDADQLRRVAATLQHIDADIVLLNEVDFD
ATGQTYENFRAKYLQIPQTEYGSESAIYYPHYYAAPSNTGIFSNVDINGD
GNITLPADAFGFGFFPGQFAFAIYSKFPIVSDQIRTFQKFLWKDMPDNLI
PDSFYADEVIDVFRLSSKNHIDVPIRIPGGALVHILGSHPTPPVFDSDAD
ENGRRNADEIRFWTDYITPGRDGYIYDDAGVKGGLAKDSIFFVCGDLNAD
PYDGDGRRDSISTLLSRYNVNDPLPSSPGGLLSTNNLNTSVGDPRYDTSF
FSPFVGNLRVDYVLPSSNTESVNAQVFWPADIDPLFPLVNGTETSDHRAV
FVDVLI*

spliced messenger RNA

>Gcaud9755.t1 ID=Gcaud9755.t1|Name=Gcaud9755.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1221bp|location=Sequence derived from alignment at NODE_666_length_19980_cov_4.323898:15829..17049+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAGCACGCATTTCTTTCTCTACCAACGCCAAACTCGCAGCTTTTGT
TTTCGCCCTTCTTGTTCAAACTGCTGTATGCTCTGACGGTAGCAAAGAGT
GCAATTTCTCGCCCTCGGTAAAGCTTGAGCGTAAGGTTTCTCTCCGCGTT
GCTTCATTCAATGCCGCACTGAACCGATTCAACGAAGGAGATCTCCTTGA
AGAGACTAAGAGCGAAGATGCCGACCAACTGCGCCGTGTGGCAGCCACTT
TGCAGCACATTGATGCTGATATTGTGCTTTTAAACGAAGTAGACTTTGAC
GCTACCGGTCAAACTTATGAAAACTTCAGGGCAAAATACCTGCAGATTCC
GCAGACAGAGTATGGTTCCGAATCCGCCATCTACTACCCACATTACTATG
CGGCTCCCTCAAACACCGGAATCTTTTCTAACGTCGATATCAACGGTGAT
GGCAACATCACGCTGCCAGCAGATGCTTTCGGCTTCGGATTCTTCCCAGG
TCAATTCGCGTTTGCAATTTACTCCAAGTTTCCTATTGTTTCTGACCAAA
TTCGTACCTTCCAGAAGTTCCTTTGGAAAGATATGCCCGATAATCTCATA
CCGGATTCCTTTTATGCGGACGAAGTGATAGATGTGTTCCGCCTTTCCTC
CAAGAACCATATCGATGTTCCGATTCGTATTCCAGGAGGTGCTTTAGTGC
ATATTCTCGGATCCCATCCGACGCCTCCGGTGTTTGATTCCGACGCTGAT
GAAAACGGACGTAGAAATGCTGATGAGATTCGATTTTGGACTGACTACAT
AACACCCGGACGTGATGGCTACATTTACGACGACGCCGGAGTCAAGGGTG
GTCTTGCAAAAGATTCCATATTCTTCGTTTGCGGAGATCTCAACGCAGAT
CCATATGATGGTGACGGTCGCCGTGATTCTATTTCAACTCTGTTGTCAAG
GTACAACGTCAATGACCCTCTTCCATCCAGTCCCGGTGGACTGCTGTCCA
CAAACAACCTCAACACGTCCGTTGGAGACCCTCGCTATGACACATCGTTC
TTCTCCCCCTTTGTCGGAAATCTAAGGGTTGACTACGTGTTGCCATCCTC
TAACACTGAATCGGTCAACGCTCAAGTCTTCTGGCCAGCAGACATTGACC
CCCTCTTCCCGCTTGTCAACGGAACAGAAACCTCAGACCACAGAGCTGTG
TTCGTGGATGTTCTTATCTGA

protein sequence of Gcaud9755.t1

>Gcaud9755.t1 ID=Gcaud9755.t1|Name=Gcaud9755.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=407bp
MQARISFSTNAKLAAFVFALLVQTAVCSDGSKECNFSPSVKLERKVSLRV
ASFNAALNRFNEGDLLEETKSEDADQLRRVAATLQHIDADIVLLNEVDFD
ATGQTYENFRAKYLQIPQTEYGSESAIYYPHYYAAPSNTGIFSNVDINGD
GNITLPADAFGFGFFPGQFAFAIYSKFPIVSDQIRTFQKFLWKDMPDNLI
PDSFYADEVIDVFRLSSKNHIDVPIRIPGGALVHILGSHPTPPVFDSDAD
ENGRRNADEIRFWTDYITPGRDGYIYDDAGVKGGLAKDSIFFVCGDLNAD
PYDGDGRRDSISTLLSRYNVNDPLPSSPGGLLSTNNLNTSVGDPRYDTSF
FSPFVGNLRVDYVLPSSNTESVNAQVFWPADIDPLFPLVNGTETSDHRAV
FVDVLI*

mRNA from alignment at NODE_666_length_19980_cov_4.323898:15829..17049+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud9755.t1 ID=Gcaud9755.t1|Name=Gcaud9755.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1221bp|location=Sequence derived from alignment at NODE_666_length_19980_cov_4.323898:15829..17049+ (Gracilaria caudata M_176_S67 male)
ATGCAAGCACGCATTTCTTTCTCTACCAACGCCAAACTCGCAGCTTTTGT
TTTCGCCCTTCTTGTTCAAACTGCTGTATGCTCTGACGGTAGCAAAGAGT
GCAATTTCTCGCCCTCGGTAAAGCTTGAGCGTAAGGTTTCTCTCCGCGTT
GCTTCATTCAATGCCGCACTGAACCGATTCAACGAAGGAGATCTCCTTGA
AGAGACTAAGAGCGAAGATGCCGACCAACTGCGCCGTGTGGCAGCCACTT
TGCAGCACATTGATGCTGATATTGTGCTTTTAAACGAAGTAGACTTTGAC
GCTACCGGTCAAACTTATGAAAACTTCAGGGCAAAATACCTGCAGATTCC
GCAGACAGAGTATGGTTCCGAATCCGCCATCTACTACCCACATTACTATG
CGGCTCCCTCAAACACCGGAATCTTTTCTAACGTCGATATCAACGGTGAT
GGCAACATCACGCTGCCAGCAGATGCTTTCGGCTTCGGATTCTTCCCAGG
TCAATTCGCGTTTGCAATTTACTCCAAGTTTCCTATTGTTTCTGACCAAA
TTCGTACCTTCCAGAAGTTCCTTTGGAAAGATATGCCCGATAATCTCATA
CCGGATTCCTTTTATGCGGACGAAGTGATAGATGTGTTCCGCCTTTCCTC
CAAGAACCATATCGATGTTCCGATTCGTATTCCAGGAGGTGCTTTAGTGC
ATATTCTCGGATCCCATCCGACGCCTCCGGTGTTTGATTCCGACGCTGAT
GAAAACGGACGTAGAAATGCTGATGAGATTCGATTTTGGACTGACTACAT
AACACCCGGACGTGATGGCTACATTTACGACGACGCCGGAGTCAAGGGTG
GTCTTGCAAAAGATTCCATATTCTTCGTTTGCGGAGATCTCAACGCAGAT
CCATATGATGGTGACGGTCGCCGTGATTCTATTTCAACTCTGTTGTCAAG
GTACAACGTCAATGACCCTCTTCCATCCAGTCCCGGTGGACTGCTGTCCA
CAAACAACCTCAACACGTCCGTTGGAGACCCTCGCTATGACACATCGTTC
TTCTCCCCCTTTGTCGGAAATCTAAGGGTTGACTACGTGTTGCCATCCTC
TAACACTGAATCGGTCAACGCTCAAGTCTTCTGGCCAGCAGACATTGACC
CCCTCTTCCCGCTTGTCAACGGAACAGAAACCTCAGACCACAGAGCTGTG
TTCGTGGATGTTCTTATCTGA

Coding sequence (CDS) from alignment at NODE_666_length_19980_cov_4.323898:15829..17049+

>Gcaud9755.t1 ID=Gcaud9755.t1|Name=Gcaud9755.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1221bp|location=Sequence derived from alignment at NODE_666_length_19980_cov_4.323898:15829..17049+ (Gracilaria caudata M_176_S67 male)
ATGCAAGCACGCATTTCTTTCTCTACCAACGCCAAACTCGCAGCTTTTGT
TTTCGCCCTTCTTGTTCAAACTGCTGTATGCTCTGACGGTAGCAAAGAGT
GCAATTTCTCGCCCTCGGTAAAGCTTGAGCGTAAGGTTTCTCTCCGCGTT
GCTTCATTCAATGCCGCACTGAACCGATTCAACGAAGGAGATCTCCTTGA
AGAGACTAAGAGCGAAGATGCCGACCAACTGCGCCGTGTGGCAGCCACTT
TGCAGCACATTGATGCTGATATTGTGCTTTTAAACGAAGTAGACTTTGAC
GCTACCGGTCAAACTTATGAAAACTTCAGGGCAAAATACCTGCAGATTCC
GCAGACAGAGTATGGTTCCGAATCCGCCATCTACTACCCACATTACTATG
CGGCTCCCTCAAACACCGGAATCTTTTCTAACGTCGATATCAACGGTGAT
GGCAACATCACGCTGCCAGCAGATGCTTTCGGCTTCGGATTCTTCCCAGG
TCAATTCGCGTTTGCAATTTACTCCAAGTTTCCTATTGTTTCTGACCAAA
TTCGTACCTTCCAGAAGTTCCTTTGGAAAGATATGCCCGATAATCTCATA
CCGGATTCCTTTTATGCGGACGAAGTGATAGATGTGTTCCGCCTTTCCTC
CAAGAACCATATCGATGTTCCGATTCGTATTCCAGGAGGTGCTTTAGTGC
ATATTCTCGGATCCCATCCGACGCCTCCGGTGTTTGATTCCGACGCTGAT
GAAAACGGACGTAGAAATGCTGATGAGATTCGATTTTGGACTGACTACAT
AACACCCGGACGTGATGGCTACATTTACGACGACGCCGGAGTCAAGGGTG
GTCTTGCAAAAGATTCCATATTCTTCGTTTGCGGAGATCTCAACGCAGAT
CCATATGATGGTGACGGTCGCCGTGATTCTATTTCAACTCTGTTGTCAAG
GTACAACGTCAATGACCCTCTTCCATCCAGTCCCGGTGGACTGCTGTCCA
CAAACAACCTCAACACGTCCGTTGGAGACCCTCGCTATGACACATCGTTC
TTCTCCCCCTTTGTCGGAAATCTAAGGGTTGACTACGTGTTGCCATCCTC
TAACACTGAATCGGTCAACGCTCAAGTCTTCTGGCCAGCAGACATTGACC
CCCTCTTCCCGCTTGTCAACGGAACAGAAACCTCAGACCACAGAGCTGTG
TTCGTGGATGTTCTTATCTGA