Gcaud9751.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud9751.t1
Unique Name	Gcaud9751.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	497

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_666_length_19980_cov_4.323898	contig	NODE_666_length_19980_cov_4.323898:4935..6425 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	50452.A0A087HC72
Preferred name	COQ6
PFAMs	DUF1232,FAD_binding_3
Max annot lvl	35493\|Streptophyta
KEGG rclass	RC02670
KEGG ko	ko:K06126
KEGG Reaction	R04982,R08773
KEGG Pathway	ko00130,ko01100,ko01110,map00130,map01100,map01110
KEGG Module	M00128
Evalue	1.02e-65
EggNOG OGs	COG0654@1\|root,KOG3855@2759\|Eukaryota,37K56@33090\|Viridiplantae,3GFF5@35493\|Streptophyta,3HNIM@3699\|Brassicales
Description	FAD-dependent monooxygenase required for the C5-ring hydroxylation during ubiquinone biosynthesis. Catalyzes the hydroxylation of 3-polyprenyl-4-hydroxybenzoic acid to 3- polyprenyl-4,5-dihydroxybenzoic acid. The electrons required for the hydroxylation reaction may be funneled indirectly from NADPH via a ferredoxin ferredoxin reductase system to COQ6
COG category	CH
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9751	Gcaud9751	Gracilaria caudata M_176_S67 male	gene	NODE_666_length_19980_cov_4.323898 4935..6425 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9751.t1.start1	Gcaud9751.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_666_length_19980_cov_4.323898 4935..4937 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9751.t1.CDS1	Gcaud9751.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_666_length_19980_cov_4.323898 4935..6425 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9751.t1.exon1	Gcaud9751.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_666_length_19980_cov_4.323898 4935..6425 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9751.t1.stop1	Gcaud9751.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_666_length_19980_cov_4.323898 6423..6425 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9751.t1	Gcaud9751.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_666_length_19980_cov_4.323898 4935..6425 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_666_length_19980_cov_4.323898:4935..6425+
coding sequence from alignment at NODE_666_length_19980_cov_4.323898:4935..6425+

mRNA sequence

>Gcaud9751.t1 ID=Gcaud9751.t1|Name=Gcaud9751.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=497bp
MLNADLLVVGGGLVGASLATAVTSHPFASRLSVVLVDPAPPSIESWPSTS
LRTSTITPSSKTFLDDIGVWARIPDERIAVFDKMFVWDHPQPLPIGNART
KAPSSPAGTIVFDANDIQQDYLGYVLDNDTLRNAMFRRMNELLLDGSTGL
RVISGSVKGIDYCESQSDPFIDSPDLDEASKPDELFNGNDSAPWPVVELE
SGELIRCRLIAACDGSRSRVRAMCDADWFHYGYGQSAVVANVQLKDVVTT
AYQRFVSTGPVAVLPVATEDTLAPVGNVIWTTTPTEARALVAAEESDFVN
ELNIVLAAHEDHDMITASSLYPNEDERRRTPWHWLASVVQSATPGVGSEG
DVLSFIPPPEATRVIGRRGQFPLTLGHSPQYVYHKRRTVLVGDAAHSVHP
LAGQGVNLGFSDAQCLADCIASAAGTGRDLGGEMGAPLMRYQSERLVGNL
GAMGVLHGLQRVFGVENSTFRDLRRAGISALNFSSPLKKAILKAMR*

spliced messenger RNA

>Gcaud9751.t1 ID=Gcaud9751.t1|Name=Gcaud9751.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1491bp|location=Sequence derived from alignment at NODE_666_length_19980_cov_4.323898:4935..6425+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCAACGCCGACTTACTCGTCGTGGGAGGAGGTTTGGTCGGCGCTTC
TTTGGCCACCGCCGTCACTTCCCACCCATTTGCAAGCCGTCTGAGCGTTG
TTTTGGTTGATCCAGCCCCACCCTCGATCGAATCATGGCCCTCGACGTCG
CTGAGAACCTCCACCATCACTCCGTCTTCAAAGACGTTTTTGGATGACAT
CGGCGTATGGGCACGCATTCCTGACGAACGTATCGCTGTATTCGATAAGA
TGTTTGTTTGGGATCACCCGCAACCGCTGCCGATCGGCAACGCACGCACG
AAGGCTCCTTCATCCCCTGCGGGCACCATTGTGTTTGACGCCAACGATAT
TCAGCAAGACTACTTGGGTTACGTGCTGGATAACGACACATTGCGAAATG
CAATGTTTCGTCGCATGAATGAGTTGCTTCTGGATGGCAGTACTGGACTT
CGCGTCATCTCCGGAAGTGTGAAGGGTATAGATTACTGTGAGTCCCAGTC
TGATCCATTCATTGATTCTCCGGATTTGGACGAGGCGAGCAAGCCGGACG
AGCTATTCAATGGTAACGATTCAGCGCCGTGGCCTGTTGTCGAACTAGAA
TCCGGTGAGCTCATTCGTTGCCGCCTTATCGCCGCATGCGATGGATCTCG
TTCGCGAGTACGAGCCATGTGTGACGCGGATTGGTTCCATTACGGCTACG
GACAGAGTGCTGTTGTGGCCAATGTCCAACTGAAGGACGTTGTCACAACC
GCATATCAACGATTCGTCTCTACTGGACCTGTTGCCGTGTTGCCCGTTGC
GACGGAAGACACTCTCGCGCCGGTTGGGAATGTCATCTGGACGACAACTC
CAACTGAGGCAAGAGCGCTTGTCGCCGCAGAAGAGTCCGATTTCGTCAAT
GAGCTCAACATTGTGCTTGCGGCACATGAAGATCATGATATGATCACTGC
TAGTTCTTTGTATCCGAACGAAGATGAGCGACGTCGAACCCCATGGCATT
GGCTTGCAAGCGTAGTGCAATCCGCAACCCCGGGCGTTGGTTCTGAAGGC
GATGTGCTCAGCTTTATACCCCCGCCTGAAGCAACCAGAGTTATCGGTAG
ACGGGGACAGTTTCCATTAACACTTGGACACTCTCCCCAGTACGTCTATC
ACAAGAGACGGACTGTTTTGGTTGGGGATGCCGCTCATAGTGTGCATCCG
TTGGCTGGACAGGGCGTGAATTTGGGGTTTTCCGATGCGCAATGCCTGGC
TGACTGCATAGCGAGCGCCGCGGGCACGGGGCGGGATCTTGGGGGAGAGA
TGGGTGCACCGTTAATGCGTTATCAGTCGGAGAGGCTCGTTGGGAATCTT
GGCGCAATGGGAGTTCTACACGGACTCCAGCGAGTTTTTGGAGTCGAAAA
CTCGACTTTTCGAGATTTGAGGCGCGCTGGCATCTCTGCGTTGAACTTCT
CGAGCCCACTGAAGAAAGCCATCCTCAAGGCAATGCGGTAG

protein sequence of Gcaud9751.t1

>Gcaud9751.t1 ID=Gcaud9751.t1|Name=Gcaud9751.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=497bp
MLNADLLVVGGGLVGASLATAVTSHPFASRLSVVLVDPAPPSIESWPSTS
LRTSTITPSSKTFLDDIGVWARIPDERIAVFDKMFVWDHPQPLPIGNART
KAPSSPAGTIVFDANDIQQDYLGYVLDNDTLRNAMFRRMNELLLDGSTGL
RVISGSVKGIDYCESQSDPFIDSPDLDEASKPDELFNGNDSAPWPVVELE
SGELIRCRLIAACDGSRSRVRAMCDADWFHYGYGQSAVVANVQLKDVVTT
AYQRFVSTGPVAVLPVATEDTLAPVGNVIWTTTPTEARALVAAEESDFVN
ELNIVLAAHEDHDMITASSLYPNEDERRRTPWHWLASVVQSATPGVGSEG
DVLSFIPPPEATRVIGRRGQFPLTLGHSPQYVYHKRRTVLVGDAAHSVHP
LAGQGVNLGFSDAQCLADCIASAAGTGRDLGGEMGAPLMRYQSERLVGNL
GAMGVLHGLQRVFGVENSTFRDLRRAGISALNFSSPLKKAILKAMR*

mRNA from alignment at NODE_666_length_19980_cov_4.323898:4935..6425+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud9751.t1 ID=Gcaud9751.t1|Name=Gcaud9751.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1491bp|location=Sequence derived from alignment at NODE_666_length_19980_cov_4.323898:4935..6425+ (Gracilaria caudata M_176_S67 male)
ATGCTCAACGCCGACTTACTCGTCGTGGGAGGAGGTTTGGTCGGCGCTTC
TTTGGCCACCGCCGTCACTTCCCACCCATTTGCAAGCCGTCTGAGCGTTG
TTTTGGTTGATCCAGCCCCACCCTCGATCGAATCATGGCCCTCGACGTCG
CTGAGAACCTCCACCATCACTCCGTCTTCAAAGACGTTTTTGGATGACAT
CGGCGTATGGGCACGCATTCCTGACGAACGTATCGCTGTATTCGATAAGA
TGTTTGTTTGGGATCACCCGCAACCGCTGCCGATCGGCAACGCACGCACG
AAGGCTCCTTCATCCCCTGCGGGCACCATTGTGTTTGACGCCAACGATAT
TCAGCAAGACTACTTGGGTTACGTGCTGGATAACGACACATTGCGAAATG
CAATGTTTCGTCGCATGAATGAGTTGCTTCTGGATGGCAGTACTGGACTT
CGCGTCATCTCCGGAAGTGTGAAGGGTATAGATTACTGTGAGTCCCAGTC
TGATCCATTCATTGATTCTCCGGATTTGGACGAGGCGAGCAAGCCGGACG
AGCTATTCAATGGTAACGATTCAGCGCCGTGGCCTGTTGTCGAACTAGAA
TCCGGTGAGCTCATTCGTTGCCGCCTTATCGCCGCATGCGATGGATCTCG
TTCGCGAGTACGAGCCATGTGTGACGCGGATTGGTTCCATTACGGCTACG
GACAGAGTGCTGTTGTGGCCAATGTCCAACTGAAGGACGTTGTCACAACC
GCATATCAACGATTCGTCTCTACTGGACCTGTTGCCGTGTTGCCCGTTGC
GACGGAAGACACTCTCGCGCCGGTTGGGAATGTCATCTGGACGACAACTC
CAACTGAGGCAAGAGCGCTTGTCGCCGCAGAAGAGTCCGATTTCGTCAAT
GAGCTCAACATTGTGCTTGCGGCACATGAAGATCATGATATGATCACTGC
TAGTTCTTTGTATCCGAACGAAGATGAGCGACGTCGAACCCCATGGCATT
GGCTTGCAAGCGTAGTGCAATCCGCAACCCCGGGCGTTGGTTCTGAAGGC
GATGTGCTCAGCTTTATACCCCCGCCTGAAGCAACCAGAGTTATCGGTAG
ACGGGGACAGTTTCCATTAACACTTGGACACTCTCCCCAGTACGTCTATC
ACAAGAGACGGACTGTTTTGGTTGGGGATGCCGCTCATAGTGTGCATCCG
TTGGCTGGACAGGGCGTGAATTTGGGGTTTTCCGATGCGCAATGCCTGGC
TGACTGCATAGCGAGCGCCGCGGGCACGGGGCGGGATCTTGGGGGAGAGA
TGGGTGCACCGTTAATGCGTTATCAGTCGGAGAGGCTCGTTGGGAATCTT
GGCGCAATGGGAGTTCTACACGGACTCCAGCGAGTTTTTGGAGTCGAAAA
CTCGACTTTTCGAGATTTGAGGCGCGCTGGCATCTCTGCGTTGAACTTCT
CGAGCCCACTGAAGAAAGCCATCCTCAAGGCAATGCGGTAG

Coding sequence (CDS) from alignment at NODE_666_length_19980_cov_4.323898:4935..6425+

>Gcaud9751.t1 ID=Gcaud9751.t1|Name=Gcaud9751.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1491bp|location=Sequence derived from alignment at NODE_666_length_19980_cov_4.323898:4935..6425+ (Gracilaria caudata M_176_S67 male)
ATGCTCAACGCCGACTTACTCGTCGTGGGAGGAGGTTTGGTCGGCGCTTC
TTTGGCCACCGCCGTCACTTCCCACCCATTTGCAAGCCGTCTGAGCGTTG
TTTTGGTTGATCCAGCCCCACCCTCGATCGAATCATGGCCCTCGACGTCG
CTGAGAACCTCCACCATCACTCCGTCTTCAAAGACGTTTTTGGATGACAT
CGGCGTATGGGCACGCATTCCTGACGAACGTATCGCTGTATTCGATAAGA
TGTTTGTTTGGGATCACCCGCAACCGCTGCCGATCGGCAACGCACGCACG
AAGGCTCCTTCATCCCCTGCGGGCACCATTGTGTTTGACGCCAACGATAT
TCAGCAAGACTACTTGGGTTACGTGCTGGATAACGACACATTGCGAAATG
CAATGTTTCGTCGCATGAATGAGTTGCTTCTGGATGGCAGTACTGGACTT
CGCGTCATCTCCGGAAGTGTGAAGGGTATAGATTACTGTGAGTCCCAGTC
TGATCCATTCATTGATTCTCCGGATTTGGACGAGGCGAGCAAGCCGGACG
AGCTATTCAATGGTAACGATTCAGCGCCGTGGCCTGTTGTCGAACTAGAA
TCCGGTGAGCTCATTCGTTGCCGCCTTATCGCCGCATGCGATGGATCTCG
TTCGCGAGTACGAGCCATGTGTGACGCGGATTGGTTCCATTACGGCTACG
GACAGAGTGCTGTTGTGGCCAATGTCCAACTGAAGGACGTTGTCACAACC
GCATATCAACGATTCGTCTCTACTGGACCTGTTGCCGTGTTGCCCGTTGC
GACGGAAGACACTCTCGCGCCGGTTGGGAATGTCATCTGGACGACAACTC
CAACTGAGGCAAGAGCGCTTGTCGCCGCAGAAGAGTCCGATTTCGTCAAT
GAGCTCAACATTGTGCTTGCGGCACATGAAGATCATGATATGATCACTGC
TAGTTCTTTGTATCCGAACGAAGATGAGCGACGTCGAACCCCATGGCATT
GGCTTGCAAGCGTAGTGCAATCCGCAACCCCGGGCGTTGGTTCTGAAGGC
GATGTGCTCAGCTTTATACCCCCGCCTGAAGCAACCAGAGTTATCGGTAG
ACGGGGACAGTTTCCATTAACACTTGGACACTCTCCCCAGTACGTCTATC
ACAAGAGACGGACTGTTTTGGTTGGGGATGCCGCTCATAGTGTGCATCCG
TTGGCTGGACAGGGCGTGAATTTGGGGTTTTCCGATGCGCAATGCCTGGC
TGACTGCATAGCGAGCGCCGCGGGCACGGGGCGGGATCTTGGGGGAGAGA
TGGGTGCACCGTTAATGCGTTATCAGTCGGAGAGGCTCGTTGGGAATCTT
GGCGCAATGGGAGTTCTACACGGACTCCAGCGAGTTTTTGGAGTCGAAAA
CTCGACTTTTCGAGATTTGAGGCGCGCTGGCATCTCTGCGTTGAACTTCT
CGAGCCCACTGAAGAAAGCCATCCTCAAGGCAATGCGGTAG