Gcaud9745.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud9745.t1
Unique NameGcaud9745.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length366
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_555_length_22204_cov_4.024239contigNODE_555_length_22204_cov_4.024239:11649..12975 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog529818.AMSG_02835T0
PFAMsERp29,Pkinase_Tyr,Thioredoxin
Max annot lvl2759|Eukaryota
KEGG koko:K09584
KEGG Pathwayko04141,map04141
Evalue1.17e-73
EggNOG OGsCOG0526@1|root,KOG0191@2759|Eukaryota
EC5.3.4.1
Descriptioncell redox homeostasis
COG categoryCO
BRITEko00000,ko00001,ko01000,ko03110,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9745Gcaud9745Gracilaria caudata M_176_S67 malegeneNODE_555_length_22204_cov_4.024239 11649..12975 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9745.t1Gcaud9745.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_555_length_22204_cov_4.024239 11649..12975 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9745.t1.start1Gcaud9745.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_555_length_22204_cov_4.024239 11649..11651 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9745.t1.CDS1Gcaud9745.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_555_length_22204_cov_4.024239 11649..11819 +
Gcaud9745.t1.CDS2Gcaud9745.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_555_length_22204_cov_4.024239 11881..12233 +
Gcaud9745.t1.CDS3Gcaud9745.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_555_length_22204_cov_4.024239 12332..12338 +
Gcaud9745.t1.CDS4Gcaud9745.t1.CDS4Gracilaria caudata M_176_S67 maleCDSNODE_555_length_22204_cov_4.024239 12409..12975 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9745.t1.exon1Gcaud9745.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_555_length_22204_cov_4.024239 11649..11819 +
Gcaud9745.t1.exon2Gcaud9745.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_555_length_22204_cov_4.024239 11881..12233 +
Gcaud9745.t1.exon3Gcaud9745.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_555_length_22204_cov_4.024239 12332..12338 +
Gcaud9745.t1.exon4Gcaud9745.t1.exon4Gracilaria caudata M_176_S67 maleexonNODE_555_length_22204_cov_4.024239 12409..12975 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9745.t1.intron1Gcaud9745.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_555_length_22204_cov_4.024239 11820..11880 +
Gcaud9745.t1.intron2Gcaud9745.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_555_length_22204_cov_4.024239 12234..12331 +
Gcaud9745.t1.intron3Gcaud9745.t1.intron3Gracilaria caudata M_176_S67 maleintronNODE_555_length_22204_cov_4.024239 12339..12408 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9745.t1.stop1Gcaud9745.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_555_length_22204_cov_4.024239 12973..12975 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud9745.t1 ID=Gcaud9745.t1|Name=Gcaud9745.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=366bp
MTGNSFTSLVPLTLLAALISLSQAYYYNDVSPADFDTLLNPEKASIMVEF
YAPWCGHCKNLAPEYQKLGETFERSKDVVIAQVDADKHKELGNRFKVQGF
PTLKWIPKGSTFEDAEDVRVARTASALLDFVNEKTGVEKKLKGSIENIVE
LTPGNFERVTGSADHHTLVAFVEPSQACAAALQTWKKVATLFSEDKEVVV
GKLDADKFGLIAKEQEVSTFPTFKYYGKAGAQVYEGESTIEALVAFINKL
TGMDVSFDDGVVPSAGKILEISEFVKSFVKAETEEERASLVDTCKETVET
LDAKAKENFDSYSKIFKKIAEKGIGYISKEKSRLMSLLDDEESLQQAQRR
KFMKKLNVLEHFTEL*
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spliced messenger RNA

>Gcaud9745.t1 ID=Gcaud9745.t1|Name=Gcaud9745.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1098bp|location=Sequence derived from alignment at NODE_555_length_22204_cov_4.024239:11649..12975+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTGGAAACTCCTTTACATCGCTTGTTCCACTGACGCTTCTTGCTGC
CTTGATATCTCTCTCTCAAGCATATTACTACAATGATGTGTCGCCAGCAG
ATTTCGACACGCTTCTTAATCCAGAGAAAGCGTCAATCATGGTCGAGTTT
TATGCCCCATGGTGCGGTCATTGCAAGAATCTGGCGCCAGAGTATCAGAA
GCTAGGTGAAACATTCGAGCGCTCGAAGGATGTTGTCATTGCTCAGGTTG
ATGCTGATAAGCACAAAGAACTTGGTAACCGTTTCAAGGTTCAGGGTTTT
CCAACACTGAAATGGATTCCAAAAGGATCGACATTTGAAGATGCAGAGGA
TGTCAGAGTCGCGAGAACTGCATCGGCTTTGCTAGACTTTGTCAATGAGA
AGACTGGCGTTGAGAAGAAGCTCAAGGGCTCGATAGAAAACATTGTCGAG
TTAACCCCAGGCAATTTTGAAAGAGTGACAGGGAGCGCAGATCACCATAC
TCTTGTGGCTTTCGTTGAACCAAGCCAAGCCTGCGCAGCAGCGTTACAAA
CTTGGAAGAAGGTTGCAACTCTTTTCTCAGAAGACAAGGAAGTTGTAGTT
GGGAAGCTCGACGCGGACAAGTTTGGACTGATTGCCAAAGAACAAGAAGT
TTCGACATTCCCAACTTTCAAGTATTATGGAAAGGCAGGAGCTCAAGTGT
ACGAAGGCGAATCAACGATAGAAGCGCTTGTAGCGTTCATTAACAAGTTG
ACGGGTATGGATGTGTCGTTCGATGACGGAGTAGTGCCCTCGGCTGGCAA
GATTCTTGAGATATCTGAGTTTGTGAAGTCGTTCGTCAAAGCTGAAACAG
AGGAGGAACGTGCGTCCTTGGTGGATACGTGCAAAGAAACTGTGGAAACA
CTAGATGCTAAAGCAAAAGAGAATTTCGACTCCTACTCCAAGATATTCAA
AAAGATAGCGGAAAAGGGTATTGGATACATCAGCAAAGAGAAGTCTCGGC
TCATGTCGCTGCTTGATGATGAAGAAAGTTTACAACAAGCTCAGAGAAGG
AAGTTCATGAAGAAACTGAATGTTCTCGAACATTTTACAGAACTTTGA
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protein sequence of Gcaud9745.t1

>Gcaud9745.t1 ID=Gcaud9745.t1|Name=Gcaud9745.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=366bp
MTGNSFTSLVPLTLLAALISLSQAYYYNDVSPADFDTLLNPEKASIMVEF
YAPWCGHCKNLAPEYQKLGETFERSKDVVIAQVDADKHKELGNRFKVQGF
PTLKWIPKGSTFEDAEDVRVARTASALLDFVNEKTGVEKKLKGSIENIVE
LTPGNFERVTGSADHHTLVAFVEPSQACAAALQTWKKVATLFSEDKEVVV
GKLDADKFGLIAKEQEVSTFPTFKYYGKAGAQVYEGESTIEALVAFINKL
TGMDVSFDDGVVPSAGKILEISEFVKSFVKAETEEERASLVDTCKETVET
LDAKAKENFDSYSKIFKKIAEKGIGYISKEKSRLMSLLDDEESLQQAQRR
KFMKKLNVLEHFTEL*
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mRNA from alignment at NODE_555_length_22204_cov_4.024239:11649..12975+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud9745.t1 ID=Gcaud9745.t1|Name=Gcaud9745.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1327bp|location=Sequence derived from alignment at NODE_555_length_22204_cov_4.024239:11649..12975+ (Gracilaria caudata M_176_S67 male)
ATGACTGGAAACTCCTTTACATCGCTTGTTCCACTGACGCTTCTTGCTGC
CTTGATATCTCTCTCTCAAGCATATTACTACAATGATGTGTCGCCAGCAG
ATTTCGACACGCTTCTTAATCCAGAGAAAGCGTCAATCATGGTCGAGTTT
TATGCCCCATGGTGCGGTCATGTACGTTACTTCTCCGGGGAATGCAGAGA
GCGACAAAACTTCTTCTAACCTCTTTCTGTAGTGCAAGAATCTGGCGCCA
GAGTATCAGAAGCTAGGTGAAACATTCGAGCGCTCGAAGGATGTTGTCAT
TGCTCAGGTTGATGCTGATAAGCACAAAGAACTTGGTAACCGTTTCAAGG
TTCAGGGTTTTCCAACACTGAAATGGATTCCAAAAGGATCGACATTTGAA
GATGCAGAGGATGTCAGAGTCGCGAGAACTGCATCGGCTTTGCTAGACTT
TGTCAATGAGAAGACTGGCGTTGAGAAGAAGCTCAAGGGCTCGATAGAAA
ACATTGTCGAGTTAACCCCAGGCAATTTTGAAAGAGTGACAGGGAGCGCA
GATCACCATACTCTTGTGGCTTTCGTTGAACCAAGGTGAGTTAATCAGAG
AGTTTTTGCGGAACGAAGTTAACAGTGATTTTCATCTAACATTTAAGTGT
ACTGCGCACCAACTGCTCTTGATCCCTGTTCAGCCAAGCCGTACGTCCTT
ACTTTCCCTTTCACCAATCCGGTTATAAGACCATATGTACTGACGATTTG
ATTCATATAGTGCGCAGCAGCGTTACAAACTTGGAAGAAGGTTGCAACTC
TTTTCTCAGAAGACAAGGAAGTTGTAGTTGGGAAGCTCGACGCGGACAAG
TTTGGACTGATTGCCAAAGAACAAGAAGTTTCGACATTCCCAACTTTCAA
GTATTATGGAAAGGCAGGAGCTCAAGTGTACGAAGGCGAATCAACGATAG
AAGCGCTTGTAGCGTTCATTAACAAGTTGACGGGTATGGATGTGTCGTTC
GATGACGGAGTAGTGCCCTCGGCTGGCAAGATTCTTGAGATATCTGAGTT
TGTGAAGTCGTTCGTCAAAGCTGAAACAGAGGAGGAACGTGCGTCCTTGG
TGGATACGTGCAAAGAAACTGTGGAAACACTAGATGCTAAAGCAAAAGAG
AATTTCGACTCCTACTCCAAGATATTCAAAAAGATAGCGGAAAAGGGTAT
TGGATACATCAGCAAAGAGAAGTCTCGGCTCATGTCGCTGCTTGATGATG
AAGAAAGTTTACAACAAGCTCAGAGAAGGAAGTTCATGAAGAAACTGAAT
GTTCTCGAACATTTTACAGAACTTTGA
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Coding sequence (CDS) from alignment at NODE_555_length_22204_cov_4.024239:11649..12975+

>Gcaud9745.t1 ID=Gcaud9745.t1|Name=Gcaud9745.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1098bp|location=Sequence derived from alignment at NODE_555_length_22204_cov_4.024239:11649..12975+ (Gracilaria caudata M_176_S67 male)
ATGACTGGAAACTCCTTTACATCGCTTGTTCCACTGACGCTTCTTGCTGC
CTTGATATCTCTCTCTCAAGCATATTACTACAATGATGTGTCGCCAGCAG
ATTTCGACACGCTTCTTAATCCAGAGAAAGCGTCAATCATGGTCGAGTTT
TATGCCCCATGGTGCGGTCATTGCAAGAATCTGGCGCCAGAGTATCAGAA
GCTAGGTGAAACATTCGAGCGCTCGAAGGATGTTGTCATTGCTCAGGTTG
ATGCTGATAAGCACAAAGAACTTGGTAACCGTTTCAAGGTTCAGGGTTTT
CCAACACTGAAATGGATTCCAAAAGGATCGACATTTGAAGATGCAGAGGA
TGTCAGAGTCGCGAGAACTGCATCGGCTTTGCTAGACTTTGTCAATGAGA
AGACTGGCGTTGAGAAGAAGCTCAAGGGCTCGATAGAAAACATTGTCGAG
TTAACCCCAGGCAATTTTGAAAGAGTGACAGGGAGCGCAGATCACCATAC
TCTTGTGGCTTTCGTTGAACCAAGCCAAGCCTGCGCAGCAGCGTTACAAA
CTTGGAAGAAGGTTGCAACTCTTTTCTCAGAAGACAAGGAAGTTGTAGTT
GGGAAGCTCGACGCGGACAAGTTTGGACTGATTGCCAAAGAACAAGAAGT
TTCGACATTCCCAACTTTCAAGTATTATGGAAAGGCAGGAGCTCAAGTGT
ACGAAGGCGAATCAACGATAGAAGCGCTTGTAGCGTTCATTAACAAGTTG
ACGGGTATGGATGTGTCGTTCGATGACGGAGTAGTGCCCTCGGCTGGCAA
GATTCTTGAGATATCTGAGTTTGTGAAGTCGTTCGTCAAAGCTGAAACAG
AGGAGGAACGTGCGTCCTTGGTGGATACGTGCAAAGAAACTGTGGAAACA
CTAGATGCTAAAGCAAAAGAGAATTTCGACTCCTACTCCAAGATATTCAA
AAAGATAGCGGAAAAGGGTATTGGATACATCAGCAAAGAGAAGTCTCGGC
TCATGTCGCTGCTTGATGATGAAGAAAGTTTACAACAAGCTCAGAGAAGG
AAGTTCATGAAGAAACTGAATGTTCTCGAACATTTTACAGAACTTTGA
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