Gcaud9727.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud9727.t1
Unique NameGcaud9727.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length77
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_5834_length_1393_cov_3.405530contigNODE_5834_length_1393_cov_3.405530:799..1191 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9727Gcaud9727Gracilaria caudata M_176_S67 malegeneNODE_5834_length_1393_cov_3.405530 799..1191 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9727.t1Gcaud9727.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_5834_length_1393_cov_3.405530 799..1191 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9727.t1.stop1Gcaud9727.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_5834_length_1393_cov_3.405530 799..801 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9727.t1.CDS1Gcaud9727.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_5834_length_1393_cov_3.405530 799..815 -
Gcaud9727.t1.CDS2Gcaud9727.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_5834_length_1393_cov_3.405530 885..928 -
Gcaud9727.t1.CDS3Gcaud9727.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_5834_length_1393_cov_3.405530 1022..1191 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9727.t1.exon1Gcaud9727.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_5834_length_1393_cov_3.405530 799..815 -
Gcaud9727.t1.exon2Gcaud9727.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_5834_length_1393_cov_3.405530 885..928 -
Gcaud9727.t1.exon3Gcaud9727.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_5834_length_1393_cov_3.405530 1022..1191 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9727.t1.intron1Gcaud9727.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_5834_length_1393_cov_3.405530 816..884 -
Gcaud9727.t1.intron2Gcaud9727.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_5834_length_1393_cov_3.405530 929..1021 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9727.t1.start1Gcaud9727.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_5834_length_1393_cov_3.405530 1189..1191 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud9727.t1 ID=Gcaud9727.t1|Name=Gcaud9727.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=77bp
MQYCLRNSDLMPQLFADISTAGQMFAIHEAQHRLDFLSDDRVPLSRLNPN
ICLTALANWFIDRQKAKFTTKLVPPY*
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spliced messenger RNA

>Gcaud9727.t1 ID=Gcaud9727.t1|Name=Gcaud9727.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=231bp|location=Sequence derived from alignment at NODE_5834_length_1393_cov_3.405530:799..1191- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGTACTGTCTGCGTAACTCCGACTTAATGCCACAGCTATTCGCCGA
CATATCCACTGCAGGGCAAATGTTTGCAATTCATGAGGCTCAGCACCGAC
TTGACTTTCTTAGTGACGATCGCGTCCCACTAAGCCGATTGAATCCAAAC
ATTTGCCTTACAGCACTGGCGAACTGGTTCATCGACCGTCAAAAGGCTAA
GTTCACCACAAAACTCGTTCCACCGTATTGA
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protein sequence of Gcaud9727.t1

>Gcaud9727.t1 ID=Gcaud9727.t1|Name=Gcaud9727.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=77bp
MQYCLRNSDLMPQLFADISTAGQMFAIHEAQHRLDFLSDDRVPLSRLNPN
ICLTALANWFIDRQKAKFTTKLVPPY*
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mRNA from alignment at NODE_5834_length_1393_cov_3.405530:799..1191-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud9727.t1 ID=Gcaud9727.t1|Name=Gcaud9727.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=393bp|location=Sequence derived from alignment at NODE_5834_length_1393_cov_3.405530:799..1191- (Gracilaria caudata M_176_S67 male)
ATGCAGTACTGTCTGCGTAACTCCGACTTAATGCCACAGCTATTCGCCGA
CATATCCACTGCAGGGCAAATGTTTGCAATTCATGAGGCTCAGCACCGAC
TTGACTTTCTTAGTGACGATCGCGTCCCACTAAGCCGATTGAATCCAAAC
ATTTGCCTTACAGCACTGGCGTCCGTCTATTAGAAAAAATGGCTATACAA
AGAAAACTACAAACCTTATTGGAGGCACAAAGAAAACGTTGTCTTTCCAA
ATTGGATACCCAGGAACTGGTTCATCGACCGTCAAAAGGCTAAGTTCACC
ACAAAACGTAAGTACAAAACATAACTTGCTCATTGTTTTAGTTTTGAAAG
CCGACACACTAATTACTCTCTCCTAGTCGTTCCACCGTATTGA
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Coding sequence (CDS) from alignment at NODE_5834_length_1393_cov_3.405530:799..1191-

>Gcaud9727.t1 ID=Gcaud9727.t1|Name=Gcaud9727.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=231bp|location=Sequence derived from alignment at NODE_5834_length_1393_cov_3.405530:799..1191- (Gracilaria caudata M_176_S67 male)
ATGCAGTACTGTCTGCGTAACTCCGACTTAATGCCACAGCTATTCGCCGA
CATATCCACTGCAGGGCAAATGTTTGCAATTCATGAGGCTCAGCACCGAC
TTGACTTTCTTAGTGACGATCGCGTCCCACTAAGCCGATTGAATCCAAAC
ATTTGCCTTACAGCACTGGCGAACTGGTTCATCGACCGTCAAAAGGCTAA
GTTCACCACAAAACTCGTTCCACCGTATTGA
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