Gcaud9720.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud9720.t1
Unique Name	Gcaud9720.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	304

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1969_length_7405_cov_4.748701	contig	NODE_1969_length_7405_cov_4.748701:1884..2795 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9720	Gcaud9720	Gracilaria caudata M_176_S67 male	gene	NODE_1969_length_7405_cov_4.748701 1884..2795 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9720.t1.start1	Gcaud9720.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1969_length_7405_cov_4.748701 1884..1886 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9720.t1.CDS1	Gcaud9720.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1969_length_7405_cov_4.748701 1884..2795 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9720.t1.exon1	Gcaud9720.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1969_length_7405_cov_4.748701 1884..2795 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9720.t1.stop1	Gcaud9720.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1969_length_7405_cov_4.748701 2793..2795 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9720.t1	Gcaud9720.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1969_length_7405_cov_4.748701 1884..2795 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1969_length_7405_cov_4.748701:1884..2795+
coding sequence from alignment at NODE_1969_length_7405_cov_4.748701:1884..2795+

mRNA sequence

>Gcaud9720.t1 ID=Gcaud9720.t1|Name=Gcaud9720.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=304bp
MVFLSEYAVAVASLLIFSVYNIQMVNRASSASDFNRTADNHASLTTFSLL
LTYAATRMLLEDESPQAVTPVFLAVLFVMANIVKNGKYHTIEWINRISTM
LLVALCLGFFIVFKGLNFLAQIALLNKLDRQIQWYHVFFIWFSSWRWFFI
SFITALPVYTPTWGLLVMTIKIVLMWVFYAGSGTSVAASPWGSLDEILLE
RNALLSLIISLITIVIIADQLAAIGKAYELEHIKATGKNVEPRDWDELKT
AIFSIFEKARQRNFVADFSECFPYVNEKDIEDVLVEVEDTKPAYIEVEDA
RDA*

spliced messenger RNA

>Gcaud9720.t1 ID=Gcaud9720.t1|Name=Gcaud9720.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=912bp|location=Sequence derived from alignment at NODE_1969_length_7405_cov_4.748701:1884..2795+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGTTTCTGAGCGAATACGCCGTGGCTGTAGCATCGCTGCTCATATT
CTCTGTATACAACATCCAGATGGTTAACCGCGCGTCTTCTGCTTCAGACT
TTAATCGTACCGCCGATAACCATGCATCTCTTACCACCTTCTCGCTGTTA
CTCACATATGCAGCCACTCGTATGTTACTAGAAGATGAATCACCTCAAGC
CGTTACTCCCGTGTTTTTGGCAGTTCTCTTTGTGATGGCCAACATCGTCA
AGAATGGAAAGTATCATACCATAGAGTGGATCAATCGCATCAGTACAATG
CTTTTGGTCGCATTATGTCTGGGTTTCTTTATTGTTTTCAAGGGCTTAAA
CTTTCTCGCTCAAATTGCCCTGCTCAACAAACTTGATCGACAGATACAAT
GGTACCATGTCTTCTTTATTTGGTTCTCGTCCTGGCGCTGGTTTTTTATT
TCCTTCATAACTGCATTACCGGTGTATACGCCCACTTGGGGACTGCTTGT
GATGACCATCAAAATTGTGTTAATGTGGGTATTTTACGCCGGTTCAGGAA
CATCGGTTGCCGCATCTCCTTGGGGCTCGTTAGATGAAATCCTACTGGAA
AGAAACGCGTTGTTGTCCCTCATAATAAGTCTAATCACCATAGTCATCAT
CGCGGATCAGTTGGCAGCAATTGGGAAAGCTTACGAATTGGAACACATCA
AGGCCACCGGGAAGAACGTGGAACCACGAGACTGGGACGAGCTTAAGACA
GCCATTTTTTCGATCTTTGAAAAAGCTCGACAGCGTAACTTTGTAGCAGA
CTTCTCCGAATGTTTTCCGTACGTTAACGAGAAAGACATTGAAGACGTAC
TCGTTGAGGTTGAAGATACGAAACCAGCGTACATCGAAGTTGAAGATGCG
AGAGATGCTTGA

protein sequence of Gcaud9720.t1

>Gcaud9720.t1 ID=Gcaud9720.t1|Name=Gcaud9720.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=304bp
MVFLSEYAVAVASLLIFSVYNIQMVNRASSASDFNRTADNHASLTTFSLL
LTYAATRMLLEDESPQAVTPVFLAVLFVMANIVKNGKYHTIEWINRISTM
LLVALCLGFFIVFKGLNFLAQIALLNKLDRQIQWYHVFFIWFSSWRWFFI
SFITALPVYTPTWGLLVMTIKIVLMWVFYAGSGTSVAASPWGSLDEILLE
RNALLSLIISLITIVIIADQLAAIGKAYELEHIKATGKNVEPRDWDELKT
AIFSIFEKARQRNFVADFSECFPYVNEKDIEDVLVEVEDTKPAYIEVEDA
RDA*

mRNA from alignment at NODE_1969_length_7405_cov_4.748701:1884..2795+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud9720.t1 ID=Gcaud9720.t1|Name=Gcaud9720.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=912bp|location=Sequence derived from alignment at NODE_1969_length_7405_cov_4.748701:1884..2795+ (Gracilaria caudata M_176_S67 male)
ATGGTGTTTCTGAGCGAATACGCCGTGGCTGTAGCATCGCTGCTCATATT
CTCTGTATACAACATCCAGATGGTTAACCGCGCGTCTTCTGCTTCAGACT
TTAATCGTACCGCCGATAACCATGCATCTCTTACCACCTTCTCGCTGTTA
CTCACATATGCAGCCACTCGTATGTTACTAGAAGATGAATCACCTCAAGC
CGTTACTCCCGTGTTTTTGGCAGTTCTCTTTGTGATGGCCAACATCGTCA
AGAATGGAAAGTATCATACCATAGAGTGGATCAATCGCATCAGTACAATG
CTTTTGGTCGCATTATGTCTGGGTTTCTTTATTGTTTTCAAGGGCTTAAA
CTTTCTCGCTCAAATTGCCCTGCTCAACAAACTTGATCGACAGATACAAT
GGTACCATGTCTTCTTTATTTGGTTCTCGTCCTGGCGCTGGTTTTTTATT
TCCTTCATAACTGCATTACCGGTGTATACGCCCACTTGGGGACTGCTTGT
GATGACCATCAAAATTGTGTTAATGTGGGTATTTTACGCCGGTTCAGGAA
CATCGGTTGCCGCATCTCCTTGGGGCTCGTTAGATGAAATCCTACTGGAA
AGAAACGCGTTGTTGTCCCTCATAATAAGTCTAATCACCATAGTCATCAT
CGCGGATCAGTTGGCAGCAATTGGGAAAGCTTACGAATTGGAACACATCA
AGGCCACCGGGAAGAACGTGGAACCACGAGACTGGGACGAGCTTAAGACA
GCCATTTTTTCGATCTTTGAAAAAGCTCGACAGCGTAACTTTGTAGCAGA
CTTCTCCGAATGTTTTCCGTACGTTAACGAGAAAGACATTGAAGACGTAC
TCGTTGAGGTTGAAGATACGAAACCAGCGTACATCGAAGTTGAAGATGCG
AGAGATGCTTGA

Coding sequence (CDS) from alignment at NODE_1969_length_7405_cov_4.748701:1884..2795+

>Gcaud9720.t1 ID=Gcaud9720.t1|Name=Gcaud9720.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=912bp|location=Sequence derived from alignment at NODE_1969_length_7405_cov_4.748701:1884..2795+ (Gracilaria caudata M_176_S67 male)
ATGGTGTTTCTGAGCGAATACGCCGTGGCTGTAGCATCGCTGCTCATATT
CTCTGTATACAACATCCAGATGGTTAACCGCGCGTCTTCTGCTTCAGACT
TTAATCGTACCGCCGATAACCATGCATCTCTTACCACCTTCTCGCTGTTA
CTCACATATGCAGCCACTCGTATGTTACTAGAAGATGAATCACCTCAAGC
CGTTACTCCCGTGTTTTTGGCAGTTCTCTTTGTGATGGCCAACATCGTCA
AGAATGGAAAGTATCATACCATAGAGTGGATCAATCGCATCAGTACAATG
CTTTTGGTCGCATTATGTCTGGGTTTCTTTATTGTTTTCAAGGGCTTAAA
CTTTCTCGCTCAAATTGCCCTGCTCAACAAACTTGATCGACAGATACAAT
GGTACCATGTCTTCTTTATTTGGTTCTCGTCCTGGCGCTGGTTTTTTATT
TCCTTCATAACTGCATTACCGGTGTATACGCCCACTTGGGGACTGCTTGT
GATGACCATCAAAATTGTGTTAATGTGGGTATTTTACGCCGGTTCAGGAA
CATCGGTTGCCGCATCTCCTTGGGGCTCGTTAGATGAAATCCTACTGGAA
AGAAACGCGTTGTTGTCCCTCATAATAAGTCTAATCACCATAGTCATCAT
CGCGGATCAGTTGGCAGCAATTGGGAAAGCTTACGAATTGGAACACATCA
AGGCCACCGGGAAGAACGTGGAACCACGAGACTGGGACGAGCTTAAGACA
GCCATTTTTTCGATCTTTGAAAAAGCTCGACAGCGTAACTTTGTAGCAGA
CTTCTCCGAATGTTTTCCGTACGTTAACGAGAAAGACATTGAAGACGTAC
TCGTTGAGGTTGAAGATACGAAACCAGCGTACATCGAAGTTGAAGATGCG
AGAGATGCTTGA